mRNA_M-pyrifera_M_contig110607.2225.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110607.2225.1
Unique NamemRNA_M-pyrifera_M_contig110607.2225.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: A0A1W0A9K5_9STRA (Procollagen-lysine 5-dioxygenase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9K5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.020e-21
Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   22 RRVTLLLYLNPAWVESQGGQLRVFYHSKHGEQSFDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVWLYSTCAPPPGSSVSPVRSLRPLPR-----------------SIFVAIASYRDPGLTPTLLSMLRAAAHPDRLHVAVLLQ 411
            R +T L YLNP+W +  GG+LR+   +    Q++DVAP +D +V+FRS  V HEVLPA+  R A T+W Y +      +S+  + +  PLP                  +IFV+IASYRD    PT+ ++   A +P R+HV + +Q
Sbjct:  199 RLITCLYYLNPSWTQGDGGELRLHLANN---QTWDVAPHLDTLVVFRSTDVYHEVLPAIKDRMAFTIWYYGSNDNSSTNSIKTIEAPAPLPNPTAPIQQQNTIEDQENPTIFVSIASYRDSECQPTVENLFATAKYPKRIHVGICMQ 342          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: A0A7S1BZ95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZ95_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.380e-20
Identity = 65/155 (41.94%), Postives = 83/155 (53.55%), Query Frame = 1
Query:   22 RRVTLLLYLNPAWV--------ESQGGQLRVFYHSKHGEQSF-DVAPLMDRMVMFRSDVVPHEVLPAVS---QRYAVTVWLYSTCAPPPGSSVSPVRSLR-PLPR------------SIFVAIASYRDPGLTPTLLSMLRAAAHPDRLHVAVLLQ 411
            R VT + YLN  W         E  GG LR++   ++G   + DVAPL DR+V+FRSD V HEVLP  +   +R A+TVWLY T   P   S  P   L  PLP             +IFV+I SYRDP   PTL S+   A +P RL+V ++ Q
Sbjct:   15 RIVTAVYYLNTGWRCAEGRWDREDDGGCLRLYDPEENGTNKYSDVAPLGDRLVIFRSDQVEHEVLPLKTDDKKRMAITVWLYHT---PKNISKRPSHPLPLPLPSPPMQDSNHIANATIFVSIPSYRDPETIPTLRSLYTQATYPSRLYVGIVWQ 166          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: A0A1Y2BKF8_9FUNG (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BKF8_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 1.080e-19
Identity = 52/139 (37.41%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   22 RRVTLLLYLNPAWVESQGGQLRVFYHSKHGEQSF-DVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVWLYST--------CAPPPGSSVSPVRSLRPLPRSIFVAIASYRDPGLTPTLLSMLRAAAHPDRLHVAVLLQ 411
            R +T++ Y    WV+ +GG+LR+   + H +  F DV P+ +R+++F+S    HEVLP    R+A T+WLYS         C  PP +    +        +IF++IASYRDP   PT+L++L  A +P RL +A+L Q
Sbjct:  187 RLITVIAYFALEWVDGKGGELRLHLPNSHKDAPFIDVKPIFNRLLIFKSHY-EHEVLPTFCDRFAFTMWLYSDNPHTIETICKEPPITVPKSITLKEDSSSTIFISIASYRDPDTHPTVLNILSTAKYPSRLTIAILYQ 324          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: A0A6G0XH16_9STRA (Procollagen-lysine 5-dioxygenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XH16_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.410e-16
Identity = 57/143 (39.86%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   22 RRVTLLLYLNPAWVESQGGQLRVFYHSKHGEQSFDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVWLYSTCAPPPGSSV-----SPVRSLRPLP--------RSIFVAIASYRDPGLTPTLLSMLRAAAHPDRLHVAVLLQ 411
            R +T L YLNP W  S GG LRV  H K GE  +DV P++D +++FRS  V HEV+P    R+A+T W YS        S+     S  + L PL          +IFV++AS+ D    PTL  +   AA   R+ V V LQ
Sbjct:  219 RCLTCLYYLNPTWDPSHGGALRV--HLKDGEV-WDVPPVLDTLLLFRSTDVEHEVMPTSVDRWALTTWYYSKPEDESAQSLPRPMPSSSKQLEPLKVQDEPEMNETIFVSVASFCDSECMPTLSHLFDTAATRTRIFVGVCLQ 358          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: A0A6H5L271_9PHAE (Procollagen-lysine 5-dioxygenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L271_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.980e-14
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   16 AIRRVTLLLYLNPAWVESQGGQLRVFYHSKH------------GEQS------FDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVWLYSTCAPPPGS-SVSPVRSLRPLP 294
            A R++T L YLNP W  S GGQLRV   S+             GE+       +D+ P++DR+V+FRSD+V HEVLPA++ R AVT+W Y      P S S     S+ PLP
Sbjct:  194 AERKITALYYLNPDWRPSMGGQLRVHLDSRREAAAEEGGPRPAGEEEEKAGRKWDIEPVLDRLVLFRSDLVEHEVLPALAPRLAVTLWFYGRQLGLPASPSARRPSSVPPLP 305          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: UPI0019C0D999 (2OG-Fe(II) oxygenase n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=UPI0019C0D999)

HSP 1 Score: 72.4 bits (176), Expect = 5.890e-14
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   22 RRVTLLLYLNPAWVESQGGQLRVFYHSKHGEQSFDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVW 225
            R+++L+LYLNP W +++GGQLR+F      ++   V+P M R+V+F+SDV+PHEVLP    R ++T W
Sbjct:   29 RKISLVLYLNPDWKDAEGGQLRLFSPDDPDKEVALVSPRMGRLVLFKSDVIPHEVLPCFQIRSSLTGW 96          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: A0A4Q6BZB4_9PROT (2OG-Fe(II) oxygenase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6BZB4_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 1.160e-13
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   22 RRVTLLLYLNPAWVESQGGQLRVFYHSKHGEQSFDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVW 225
            RR++L+LYLNP W  + GGQLR+F      ++   + P   R+V+FRSD+VPHEVLP    R+++T W
Sbjct:   42 RRISLVLYLNPEWSATDGGQLRLFSSEDEMQEVTMITPQWGRLVLFRSDLVPHEVLPCFQIRWSLTGW 109          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: A0A7S0A1R0_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A1R0_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 1.680e-13
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    7 AAAAIRRVTLLLYLNPAWVESQGGQLRVFYH-------------SKHGEQSFDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVWLY 231
            AA + RRVT++ YLNPAWV   GG LR +                + GE   D+ P +DR+V+F S+ + HEVLPA ++RYA+T WLY
Sbjct:  511 AAGSHRRVTMVYYLNPAWVPKHGGCLRAYLPPALGPSVPGARPAKEGGEWLLDIEPRIDRLVIFASEWLDHEVLPAHAERYAITAWLY 598          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: D7FNT7_ECTSI (Procollagen-lysine 5-dioxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT7_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.710e-13
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   16 AIRRVTLLLYLNPAWVESQGGQLRVFYHSKH------------GEQS------FDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVWLYSTCAPPPGS-SVSPVRSLRPLP 294
            A R++T L YLNP W  S GGQLRV   S+             GE+       +D+ P++DR+V+FRSD+V HEVLPA + R AVT+W Y      P S S     S+ PLP
Sbjct:  194 AERKITALYYLNPDWRPSMGGQLRVHLDSRPEAAAEEGGPRPAGEEEEKAGRKWDIEPVLDRLVLFRSDLVEHEVLPASAPRLAVTLWFYGRQLGLPASPSTRSPSSVPPLP 305          
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Match: UPI001D02AE18 (2OG-Fe(II) oxygenase n=1 Tax=Pusillimonas sp. CC-YST705 TaxID=2755040 RepID=UPI001D02AE18)

HSP 1 Score: 73.2 bits (178), Expect = 2.070e-13
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   10 AAAIRRVTLLLYLNPAWVESQGGQLRVFYHSKHGEQSFDVAPLMDRMVMFRSDVVPHEVLPAVSQRYAVTVWLYS 234
            A++ R+++L+LYLNP W +  GG+L +++      +   +AP M R+++FRSD++PH VLP  S R+++T W  S
Sbjct:  108 ASSARKISLVLYLNPDWQQGDGGELCIYHPESPDTEQVRIAPRMGRLMLFRSDLIPHAVLPCSSARWSLTGWFRS 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110607.2225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W0A9K5_9STRA1.020e-2137.41Procollagen-lysine 5-dioxygenase n=1 Tax=Thraustot... [more]
A0A7S1BZ95_9STRA2.380e-2041.94Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A1Y2BKF8_9FUNG1.080e-1937.41Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A6G0XH16_9STRA6.410e-1639.86Procollagen-lysine 5-dioxygenase n=1 Tax=Aphanomyc... [more]
A0A6H5L271_9PHAE4.980e-1442.86Procollagen-lysine 5-dioxygenase n=1 Tax=Ectocarpu... [more]
UPI0019C0D9995.890e-1447.062OG-Fe(II) oxygenase n=1 Tax=Bdellovibrionaceae ba... [more]
A0A4Q6BZB4_9PROT1.160e-1347.062OG-Fe(II) oxygenase (Fragment) n=1 Tax=Proteobact... [more]
A0A7S0A1R0_9DINO1.680e-1344.32Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
D7FNT7_ECTSI1.710e-1342.86Procollagen-lysine 5-dioxygenase n=1 Tax=Ectocarpu... [more]
UPI001D02AE182.070e-1340.002OG-Fe(II) oxygenase n=1 Tax=Pusillimonas sp. CC-Y... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110607contigM-pyrifera_M_contig110607:49..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog65071.PYU1_T004073
KEGG koko:K12244
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Skp1-protein -hydroxyproline N-acetylglucosaminyltransferase, family GT60. Source PGD
EggNOG OGs1MDK4@121069,KOG3710@1,KOG3710@2759
EC2.4.1.229
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons2
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.8093507-CDS-M-pyrifera_M_contig110607:48..2121622815617.8093507-CDS-M-pyrifera_M_contig110607:48..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110607 49..212 +
1692277489.842216-CDS-M-pyrifera_M_contig110607:48..2121692277489.842216-CDS-M-pyrifera_M_contig110607:48..212Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110607 49..212 +
1622815617.823156-CDS-M-pyrifera_M_contig110607:267..5141622815617.823156-CDS-M-pyrifera_M_contig110607:267..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110607 268..514 +
1692277489.8545709-CDS-M-pyrifera_M_contig110607:267..5141692277489.8545709-CDS-M-pyrifera_M_contig110607:267..514Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110607 268..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110607.2225.1prot_M-pyrifera_M_contig110607.2225.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110607 49..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110607.2225.1

>prot_M-pyrifera_M_contig110607.2225.1 ID=prot_M-pyrifera_M_contig110607.2225.1|Name=mRNA_M-pyrifera_M_contig110607.2225.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MPAAAAIRRVTLLLYLNPAWVESQGGQLRVFYHSKHGEQSFDVAPLMDRM
VMFRSDVVPHEVLPAVSQRYAVTVWLYSTCAPPPGSSVSPVRSLRPLPRS
IFVAIASYRDPGLTPTLLSMLRAAAHPDRLHVAVLLQ
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mRNA from alignment at M-pyrifera_M_contig110607:49..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110607.2225.1 ID=mRNA_M-pyrifera_M_contig110607.2225.1|Name=mRNA_M-pyrifera_M_contig110607.2225.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=466bp|location=Sequence derived from alignment at M-pyrifera_M_contig110607:49..514+ (Macrocystis pyrifera P11B4 male)
ATGCCGGCGGCTGCTGCGATTCGAAGGGTGACGCTGCTTCTGTACTTGAA CCCAGCGTGGGTGGAGTCGCAGGGTGGGCAGCTGCGTGTTTTCTACCACT CCAAGCACGGCGAGCAGTCGTTTGACGTCGCTCCGCTGATGGACCGCATG GTGATGTTCAGAAGGTGCGTCTTGAGGCTGTTATCCCTCCGCTCATCCAC TGACGTGCAATGCCCGCAGCGATGTGGTCCCGCACGAGGTGCTGCCCGCT GTCTCCCAGCGGTATGCAGTCACGGTGTGGCTGTACAGCACCTGCGCTCC GCCGCCGGGGAGCTCTGTGTCGCCAGTCCGTTCCCTGCGGCCACTGCCTC GCTCCATTTTCGTGGCCATTGCTTCGTACCGTGACCCAGGCTTGACCCCG ACGCTGTTGTCCATGCTGAGGGCAGCTGCGCATCCGGACCGGCTTCATGT GGCGGTGTTGCTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110607:49..514+

>mRNA_M-pyrifera_M_contig110607.2225.1 ID=mRNA_M-pyrifera_M_contig110607.2225.1|Name=mRNA_M-pyrifera_M_contig110607.2225.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig110607:49..514+ (Macrocystis pyrifera P11B4 male)
ATGCCGGCGGCTGCTGCGATTCGAAGGGTGACGCTGCTTCTGTACTTGAA
CCCAGCGTGGGTGGAGTCGCAGGGTGGGCAGCTGCGTGTTTTCTACCACT
CCAAGCACGGCGAGCAGTCGTTTGACGTCGCTCCGCTGATGGACCGCATG
GTGATGTTCAGAAGATGCCGGCGGCTGCTGCGATTCGAAGGGTGACGCTG
CTTCTGTACTTGAACCCAGCGTGGGTGGAGTCGCAGGGTGGGCAGCTGCG
TGTTTTCTACCACTCCAAGCACGGCGAGCAGTCGTTTGACGTCGCTCCGC
TGATGGACCGCATGGTGATGTTCAGAAGCGATGTGGTCCCGCACGAGGTG
CTGCCCGCTGTCTCCCAGCGGTATGCAGTCACGGTGTGGCTGTACAGCAC
CTGCGCTCCGCCGCCGGGGAGCTCTGTGTCGCCAGTCCGTTCCCTGCGGC
CACTGCCTCGCTCCATTTTCGTGGCCATTGCTTCGTACCGTGACCCAGGC
TTGACCCCGACGCTGTTGTCCATGCTGAGGGCAGCTGCGCATCCGGACCG
GCTTCATGTGGCGGTGTTGCTGCAGCGATGTGGTCCCGCACGAGGTGCTG
CCCGCTGTCTCCCAGCGGTATGCAGTCACGGTGTGGCTGTACAGCACCTG
CGCTCCGCCGCCGGGGAGCTCTGTGTCGCCAGTCCGTTCCCTGCGGCCAC
TGCCTCGCTCCATTTTCGTGGCCATTGCTTCGTACCGTGACCCAGGCTTG
ACCCCGACGCTGTTGTCCATGCTGAGGGCAGCTGCGCATCCGGACCGGCT
TCATGTGGCGGTGTTGCTGCAG
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