mRNA_M-pyrifera_M_contig110597.2219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110597.2219.1
Unique NamemRNA_M-pyrifera_M_contig110597.2219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110597.2219.1 vs. uniprot
Match: A0A7S4I8P2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8P2_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 6.290e-20
Identity = 54/153 (35.29%), Postives = 87/153 (56.86%), Query Frame = 1 
Query:    4 HSVNNPIET--QVGKGKAGDSGKLQ-GVLSGNSPLATVFPLTTQEDEDLFLDLLFLQVTSDSNPTGEIRGQLISIDYINQPAFTAFLNGDQA--NSGTFFEGAAVVAYDCESRLMEYIVLHDGVNPTDAFVVVGELSEQAQFLFSLPNVESPI 447
            HSV  P+++  ++     G  G L     +  SP       T  E+ D F DL ++ V S  NPTGEIRGQ+++IDYI++ +FTA L+ +Q+   + +   G A+ AY C+++++EY+V+H+  +P  AF+      +    LFSL +  SPI
Sbjct:  198 HSVQQPLQSGLEIRSAPPGQIGPLVFSFRNAESPAYESVQYTINEEADFFRDLHYINVLSQRNPTGEIRGQMVTIDYIDELSFTARLDSEQSVPQTDSNNRGNALFAYHCDTKVLEYVVMHNIPDPRGAFIGSAPAGDAGVTLFSLTSGSSPI 350
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110597.2219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4I8P2_9EUKA6.290e-2035.29Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110597contigM-pyrifera_M_contig110597:6..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.265431-CDS-M-pyrifera_M_contig110597:5..4521622815617.265431-CDS-M-pyrifera_M_contig110597:5..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110597 6..452 +
1692277489.4987304-CDS-M-pyrifera_M_contig110597:5..4521692277489.4987304-CDS-M-pyrifera_M_contig110597:5..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110597 6..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110597.2219.1prot_M-pyrifera_M_contig110597.2219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110597 6..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110597.2219.1

>prot_M-pyrifera_M_contig110597.2219.1 ID=prot_M-pyrifera_M_contig110597.2219.1|Name=mRNA_M-pyrifera_M_contig110597.2219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
THSVNNPIETQVGKGKAGDSGKLQGVLSGNSPLATVFPLTTQEDEDLFLD
LLFLQVTSDSNPTGEIRGQLISIDYINQPAFTAFLNGDQANSGTFFEGAA
VVAYDCESRLMEYIVLHDGVNPTDAFVVVGELSEQAQFLFSLPNVESPI
back to top

mRNA from alignment at M-pyrifera_M_contig110597:6..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110597.2219.1 ID=mRNA_M-pyrifera_M_contig110597.2219.1|Name=mRNA_M-pyrifera_M_contig110597.2219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig110597:6..452+ (Macrocystis pyrifera P11B4 male)
ACCCACAGCGTCAACAATCCCATTGAGACGCAGGTTGGCAAGGGCAAGGC
AGGCGACTCTGGAAAGCTCCAGGGTGTGCTCAGCGGCAACTCTCCTCTTG
CTACCGTCTTTCCCTTGACGACTCAGGAGGACGAGGACCTTTTCCTGGAC
CTCCTCTTCTTGCAGGTGACGTCTGACAGCAACCCCACTGGAGAGATCCG
TGGCCAGCTGATCTCGATCGACTACATCAACCAGCCGGCATTCACTGCCT
TCCTCAACGGCGACCAGGCCAACTCTGGTACTTTCTTCGAGGGCGCGGCC
GTGGTTGCGTACGACTGCGAGAGCAGGCTGATGGAGTACATTGTTCTTCA
TGACGGCGTCAACCCCACCGACGCCTTCGTCGTCGTGGGCGAGCTCAGCG
AGCAGGCCCAGTTCCTCTTCTCTCTTCCCAACGTCGAGAGCCCTATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110597:6..452+

>mRNA_M-pyrifera_M_contig110597.2219.1 ID=mRNA_M-pyrifera_M_contig110597.2219.1|Name=mRNA_M-pyrifera_M_contig110597.2219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig110597:6..452+ (Macrocystis pyrifera P11B4 male)
ACCCACAGCGTCAACAATCCCATTGAGACGCAGGTTGGCAAGGGCAAGGC
AGGCGACTCTGGAAAGCTCCAGGGTGTGCTCAGCGGCAACTCTCCTCTTG
CTACCGTCTTTCCCTTGACGACTCAGGAGGACGAGGACCTTTTCCTGGAC
CTCCTCTTCTTGCAGGTGACGTCTGACAGCAACCCCACTGGAGAGATCCG
TGGCCAGCTGATCTCGATCGACTACATCAACCAGCCGGCATTCACTGCCT
TCCTCAACGGCGACCAGGCCAACTCTGGTACTTTCTTCGAGGGCGCGGCC
GTGGTTGCGTACGACTGCGAGAGCAGGCTGATGGAGTACATTGTTCTTCA
TGACGGCGTCAACCCCACCGACGCCTTCGTCGTCGTGGGCGAGCTCAGCG
AGCAGGCCCAGTTCCTCTTCTCTCTTCCCAACGTCGAGAGCCCTATCACC
CACAGCGTCAACAATCCCATTGAGACGCAGGTTGGCAAGGGCAAGGCAGG
CGACTCTGGAAAGCTCCAGGGTGTGCTCAGCGGCAACTCTCCTCTTGCTA
CCGTCTTTCCCTTGACGACTCAGGAGGACGAGGACCTTTTCCTGGACCTC
CTCTTCTTGCAGGTGACGTCTGACAGCAACCCCACTGGAGAGATCCGTGG
CCAGCTGATCTCGATCGACTACATCAACCAGCCGGCATTCACTGCCTTCC
TCAACGGCGACCAGGCCAACTCTGGTACTTTCTTCGAGGGCGCGGCCGTG
GTTGCGTACGACTGCGAGAGCAGGCTGATGGAGTACATTGTTCTTCATGA
CGGCGTCAACCCCACCGACGCCTTCGTCGTCGTGGGCGAGCTCAGCGAGC
AGGCCCAGTTCCTCTTCTCTCTTCCCAACGTCGAGAGCCCTATC
back to top