mRNA_M-pyrifera_M_contig110594.2216.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110594.2216.1
Unique NamemRNA_M-pyrifera_M_contig110594.2216.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110594.2216.1 vs. uniprot
Match: A0A7Y2ICZ1_9ACTN (AAA family ATPase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2ICZ1_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 5.280e-15
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:    1 LPDTVAALVRSRLDHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVALEAIESALEAELVHEVTGSVERFRFSHQLVPAAIVESMSSARLVRLHARLADVIREEGGPGPSVAHHLLEAFPV 372
            LP ++ ALVRSR+D L                                 AL A+++A+ A+L+HE T +VER+RFSHQLVPAA++E M++     LH R   V+ EE  P   VA HLL++ P+
Sbjct:  405 LPPSITALVRSRVDRLSADAQSLVMAGATLGVEFRIGTAASVAGLRLVDALSALDTAIRADLIHEGT-TVERYRFSHQLVPAALLEGMTAPGRAALHHRAVSVLDEEDAPRSEVAMHLLDSVPL 527
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BLAST of mRNA_M-pyrifera_M_contig110594.2216.1 vs. uniprot
Match: UPI00048A177D (AAA family ATPase n=1 Tax=Arthrobacter sp. MA-N2 TaxID=1101188 RepID=UPI00048A177D)

HSP 1 Score: 55.1 bits (131), Expect = 3.030e-6
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  151 LEAIESALEAELVHEVTG----SVERFRFSHQLVPAAIVESMSSARLVRLHARLADVIREEGGPG-----PSVAHHLLEAFPV 372
            LE +E A +A+L+++VTG    +VER+ F H +V  AI+ES+S AR+ R+HA  A  + +            +A HL++A P+
Sbjct:  421 LEGVEEATQAQLLYDVTGISPGAVERYEFVHAIVRKAIIESVSPARVRRIHAAAAAALEQLFSHALEERADEIARHLVQAGPI 503
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BLAST of mRNA_M-pyrifera_M_contig110594.2216.1 vs. uniprot
Match: UPI00168BAC55 (AAA family ATPase n=1 Tax=Pseudarthrobacter sulfonivorans TaxID=121292 RepID=UPI00168BAC55)

HSP 1 Score: 52.0 bits (123), Expect = 3.500e-5
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  151 LEAIESALEAELVHEVTGS----VERFRFSHQLVPAAIVESMSSARLVRLHARLADVIREEGGP-----GPSVAHHLLEAFPV 372
            LE +E A +A+L+++VT +    VER+ F H +V  AI+ES+S AR+ R+HA  A  + +            +A HL++A P+
Sbjct:  421 LERVEEATQAQLLYDVTAAAPDAVERYEFVHAIVRKAIIESVSPARVRRIHAAAAVALEQLYSHTLEERADEIARHLVQAGPI 503
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BLAST of mRNA_M-pyrifera_M_contig110594.2216.1 vs. uniprot
Match: A0A661US04_9CHLR (AAA domain-containing protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A661US04_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 3.570e-5
Identity = 38/128 (29.69%), Postives = 55/128 (42.97%), Query Frame = 1 
Query:    1 LPDTVAALVRSRLDHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVALEAIESALEAELVHEVTGSVERFRFSHQLVPAAIVESMSSARLVRLHARLADVI----REEGGPG-PSVAHHLLEAFP 369
            +P  V  +V  RLDHL                                  LE +E A+ A +V EV  +  R+ F+H L+   + E +S+AR VRLH ++ +V+    RE   P    +AHH  EA P
Sbjct:  275 IPQGVREVVGRRLDHLSEDCNSVLTIASVIGREFGLDAMERVSDVTGDRLLEVLEEAVGARVVAEVPRTAGRYSFTHALIRETLYEELSTARRVRLHRQIGEVLEGLHREALDPHLAELAHHFSEAAP 402
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BLAST of mRNA_M-pyrifera_M_contig110594.2216.1 vs. uniprot
Match: UPI0018C9CF9E (AAA family ATPase n=1 Tax=Arthrobacter sp. 35W TaxID=1132441 RepID=UPI0018C9CF9E)

HSP 1 Score: 51.6 bits (122), Expect = 4.910e-5
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 1 
Query:  151 LEAIESALEAELVHEVTG----SVERFRFSHQLVPAAIVESMSSARLVRLHARLADVIREEGGP------GPSVAHHLLEAFPV 372
            LE +E A +A+L+++VTG    +VE + F H +V  AI+ES+S AR+ R+HA  A  + E+  P         +A HL+++ P+
Sbjct:  397 LEGVEEATQAQLLYDVTGISPGAVESYEFVHAIVRKAIIESVSPARVRRIHAAAAAAL-EQLFPHSLEVRADEIARHLVQSGPI 479
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110594.2216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7Y2ICZ1_9ACTN5.280e-1537.90AAA family ATPase n=1 Tax=Acidimicrobiales bacteri... [more]
UPI00048A177D3.030e-637.35AAA family ATPase n=1 Tax=Arthrobacter sp. MA-N2 T... [more]
UPI00168BAC553.500e-536.14AAA family ATPase n=1 Tax=Pseudarthrobacter sulfon... [more]
A0A661US04_9CHLR3.570e-529.69AAA domain-containing protein (Fragment) n=1 Tax=C... [more]
UPI0018C9CF9E4.910e-536.90AAA family ATPase n=1 Tax=Arthrobacter sp. 35W Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110594contigM-pyrifera_M_contig110594:30..404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.1344109-CDS-M-pyrifera_M_contig110594:29..4041622815617.1344109-CDS-M-pyrifera_M_contig110594:29..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110594 30..404 -
1692277489.4464867-CDS-M-pyrifera_M_contig110594:29..4041692277489.4464867-CDS-M-pyrifera_M_contig110594:29..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110594 30..404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110594.2216.1prot_M-pyrifera_M_contig110594.2216.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110594 30..404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110594.2216.1

>prot_M-pyrifera_M_contig110594.2216.1 ID=prot_M-pyrifera_M_contig110594.2216.1|Name=mRNA_M-pyrifera_M_contig110594.2216.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
LPDTVAALVRSRLDHLPDEVSSLVGASAAIGPDFDLRIAGLAAGLSPDVA
LEAIESALEAELVHEVTGSVERFRFSHQLVPAAIVESMSSARLVRLHARL
ADVIREEGGPGPSVAHHLLEAFPVL
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mRNA from alignment at M-pyrifera_M_contig110594:30..404-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110594.2216.1 ID=mRNA_M-pyrifera_M_contig110594.2216.1|Name=mRNA_M-pyrifera_M_contig110594.2216.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig110594:30..404- (Macrocystis pyrifera P11B4 male)
CTCCCCGACACCGTTGCGGCCCTGGTCAGAAGCAGGCTCGATCACCTTCC
GGATGAGGTTTCCTCGCTGGTCGGCGCATCGGCCGCAATCGGCCCAGACT
TCGATCTGCGCATCGCCGGTCTCGCCGCCGGTCTGTCGCCCGACGTTGCC
TTGGAGGCGATCGAGTCGGCGCTCGAAGCCGAGCTGGTGCACGAGGTGAC
CGGTTCGGTGGAACGGTTCCGGTTCTCCCACCAACTCGTGCCGGCCGCCA
TCGTGGAGAGCATGAGCAGCGCTCGCCTGGTGCGGCTCCATGCGCGACTT
GCCGACGTGATCCGGGAAGAAGGTGGCCCTGGACCGTCGGTGGCCCATCA
TCTCCTCGAGGCGTTCCCCGTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110594:30..404-

>mRNA_M-pyrifera_M_contig110594.2216.1 ID=mRNA_M-pyrifera_M_contig110594.2216.1|Name=mRNA_M-pyrifera_M_contig110594.2216.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig110594:30..404- (Macrocystis pyrifera P11B4 male)
CTCCCCGACACCGTTGCGGCCCTGGTCAGAAGCAGGCTCGATCACCTTCC
GGATGAGGTTTCCTCGCTGGTCGGCGCATCGGCCGCAATCGGCCCAGACT
TCGATCTGCGCATCGCCGGTCTCGCCGCCGGTCTGTCGCCCGACGTTGCC
TTGGAGGCGATCGAGTCGGCGCTCGAAGCCGAGCTGGTGCACGAGGTGAC
CGGTTCGGTGGAACGGTTCCGGTTCTCCCACCAACTCGTGCCGGCCGCCA
TCGTGGAGAGCATGAGCAGCGCTCGCCTGGTGCGGCTCCATGCGCGACTT
GCCGACGTGATCCGGGAAGAAGGTGGCCCTGGACCGTCGGTGGCCCATCA
TCTCCTCGAGGCGTTCCCCGTGCTCCTCCCCGACACCGTTGCGGCCCTGG
TCAGAAGCAGGCTCGATCACCTTCCGGATGAGGTTTCCTCGCTGGTCGGC
GCATCGGCCGCAATCGGCCCAGACTTCGATCTGCGCATCGCCGGTCTCGC
CGCCGGTCTGTCGCCCGACGTTGCCTTGGAGGCGATCGAGTCGGCGCTCG
AAGCCGAGCTGGTGCACGAGGTGACCGGTTCGGTGGAACGGTTCCGGTTC
TCCCACCAACTCGTGCCGGCCGCCATCGTGGAGAGCATGAGCAGCGCTCG
CCTGGTGCGGCTCCATGCGCGACTTGCCGACGTGATCCGGGAAGAAGGTG
GCCCTGGACCGTCGGTGGCCCATCATCTCCTCGAGGCGTTCCCCGTGCTC
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