mRNA_M-pyrifera_M_contig110592.2215.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: UPI00145B67BA (mechanosensitive ion channel family protein n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI00145B67BA) HSP 1 Score: 208 bits (529), Expect = 1.050e-59 Identity = 99/187 (52.94%), Postives = 138/187 (73.80%), Query Frame = 1
Query: 16 NFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYKA 576
+FA+PRG +GV + A M AIA GL+VE+ VTR+A+KWRRQI++ +GLK+T+E+LGKRL+L++VGL AFF VTR+++ +LVP DR+ + MV++VV+PRL AA RFL+AP P RLV TDDWTA+FL+ NQ IV+LAG S FQ+M+GV + + + FWL + F+WI Y +Y+A
Sbjct: 130 SFAEPRGLNGVLTMFAMMAVAIAVGLVVEIIVTRLATKWRRQIEEAKAPEGLKETLEVLGKRLILELVGLFAFFIVTRIMIELLVPAEDRQLVPVLMVNLVVVPRLFAAISRFLLAPSRPEFRLVQTDDWTARFLFRNQLYIVVLAGVSIVTFKFQMMHGVSLDDATVSFWLEVAIFVWIAYVLYRA 316
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: UPI001C699345 (mechanosensitive ion channel family protein n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C699345) HSP 1 Score: 189 bits (480), Expect = 9.720e-53 Identity = 90/187 (48.13%), Postives = 126/187 (67.38%), Query Frame = 1
Query: 16 NFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYKA 576
F + RG +G F LI +VGAIA GL+ E V R+ASKWRRQ + + L+QT+E LGKRL++D+ GLLAFF V R++++ + + DR+ FM+ ++V+PRL AA RF++AP P +RLVY DDWTAKF+YYN G+V+LAGF+ ++ F + NG FW+NL F+W+G YKA
Sbjct: 141 KFVEDRGGAGFFQLILLVVGAIAAGLVAEFIVDRLASKWRRQYEHQHAPENLRQTLEFLGKRLVVDMAGLLAFFIVGRIVIMQFIADQDRQVVHAFMLYLIVVPRLVAALARFVLAPGRPDMRLVYADDWTAKFIYYNALGVVILAGFNIFLVEFLMTNGQFALGNAFVFWINLGVFVWLGVMTYKA 327
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: UPI001A023849 (Mechanosensitive ion channel n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A023849) HSP 1 Score: 140 bits (352), Expect = 4.880e-35 Identity = 71/191 (37.17%), Postives = 115/191 (60.21%), Query Frame = 1
Query: 1 ASGFANFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYK 573
A F NF K G G+ L+ +++ A+A GL+ E ++ +W ++ + L QT+ L RLL +I GL+AFF V R++ ++P I + +++V PR+ AAF RFL+AP P LRL++TDD +A+ LY + G++LL GF+ AI+ F ++NGV +G +GFWLN+ I+ + ++K
Sbjct: 113 AESFGNFYKNWGAKGLITLLGSLLLAVAAGLVAEFIAGKVTRRWHAAALSIENPETLGQTIRFLLYRLLHEIYGLIAFFIVARMVTRAILPADLLPIFQIIVFNLIVTPRIGAAFARFLLAPQKPKLRLLHTDDTSAQTLYRHLIGMLLLLGFTVAIVEFNILNGVSIGTASIGFWLNISIHIYAIWIIWK 303
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: A0A5B8KWM3_9HYPH (Mechanosensitive ion channel family protein n=1 Tax=Nitratireductor sp. SY7 TaxID=2599600 RepID=A0A5B8KWM3_9HYPH) HSP 1 Score: 135 bits (340), Expect = 2.120e-33 Identity = 74/183 (40.44%), Postives = 103/183 (56.28%), Query Frame = 1
Query: 7 GFANFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWI 555
GF F G+ G+ +L+ + G I GL E V R + W+R++ + L+ T+ LG+RL D++GLL F VTRVL ++V A MVS VVLPRL AA RFL+AP LRL+ DDWTA +L+ +Q G+ +L G S ++SF N T+LGFWL + F W+
Sbjct: 124 GFETFIGRAGWGGLGVLLLTLAGLIPVGLAAERLVNRQTAAWQRRMTEQSEPATLRATLSFLGRRLFADVIGLLTFLVVTRVLAPLVVSADAIPLAHSIMVSFVVLPRLVAALSRFLLAPKRADLRLLSVDDWTASYLHRSQIGLAVLVGASGFLVSFMNANDAAGAATQLGFWLTVAVFGWL 306
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: UPI000D55A4DE (mechanosensitive ion channel family protein n=1 Tax=Tateyamaria sp. Alg231-49 TaxID=1922219 RepID=UPI000D55A4DE) HSP 1 Score: 134 bits (338), Expect = 3.930e-33 Identity = 69/188 (36.70%), Postives = 112/188 (59.57%), Query Frame = 1
Query: 10 FANFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYK 573
FANF G +G+ L A+ IA ++ EL ++A W + QM+ +++T+ LL KRL+ + +L FF V ++ ++PE R F + + ++VLPR+A A RF+MAP P+ R V+TDD TAK + ++ + L GF++ I++F NGVP GETR+GFWLNL +++ +++
Sbjct: 120 FANFVNFFGGTGLLYLFVALGAVIAVAVVAELLFRQVARPWLKLPAQMNADASIRETVSLLFKRLMGQVGAVLVFFVVAGIMTHNVIPELYRPFIALAVPMLIVLPRMAGAISRFVMAPDNPAYRFVHTDDRTAKTIAFHMFWLTFLIGFTFFILAFNTANGVPAGETRIGFWLNLSVHVYLALIIWR 307
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: A0A1E4ZJV5_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E4ZJV5_9GAMM) HSP 1 Score: 125 bits (313), Expect = 9.170e-30 Identity = 65/187 (34.76%), Postives = 108/187 (57.75%), Query Frame = 1
Query: 16 NFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYKA 576
NF +G G+ + + A+A G + E VT + KW++QI D +++ +LL R LD+ GL+ F V +++ ++ ++ F+ + M +++ LPRL A RFL+AP P LR+V+TD+WTA+FL+ +Q G++LL G A I F ++NG E LG+W+NL + + V+ A
Sbjct: 107 NFISRQGEGGLLPVFTVLGLALALGFLAEWGVTLLTRKWQQQIANPVNPDSYRESFKLLSLRFALDMAGLITFIVVMTIVIDLIQLKTADGFSYLIMNNLIFLPRLILAISRFLLAPNRPELRIVHTDEWTARFLHRHQFGLILLIGVGNAWIKFMIINGALPDEMLLGYWINLAVHAYFIFIVWHA 293
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: A0A1H6VRY3_9RHOB (Small-conductance mechanosensitive channel n=1 Tax=Cribrihabitans marinus TaxID=1227549 RepID=A0A1H6VRY3_9RHOB) HSP 1 Score: 124 bits (310), Expect = 2.330e-29 Identity = 70/189 (37.04%), Postives = 104/189 (55.03%), Query Frame = 1
Query: 10 FANFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYKA 576
FANF G SG+ L +A G E + W + + D SD L+ + L +RL +++GL+ F+ V RV+ ++ + +A F+ +++LPRL AA RF++AP PS+RLV DD A +L+ NQ G+ L GF+ I+ F +NGVP GE RLGFWLN ++IG + A
Sbjct: 117 FANFGSTFGGSGLLRLFGLTALILAVGYAAERLAVYLTRDWHTRAKPADDSD-LRGALRFLFRRLCREVLGLIVFWVVLRVVGRQILSAQEIAYAAPFVFYLILLPRLGAAISRFILAPKQPSIRLVSIDDHWASYLHRNQIGLFFLIGFTLWILGFNALNGVPPGEMRLGFWLNTSIHVYIGIIAWTA 304
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: A0A0P1FEN0_9RHOB (Putative MscS family protein YfkC n=2 Tax=Shimia TaxID=573139 RepID=A0A0P1FEN0_9RHOB) HSP 1 Score: 121 bits (303), Expect = 2.060e-28 Identity = 74/191 (38.74%), Postives = 108/191 (56.54%), Query Frame = 1
Query: 10 FANFAKPRG-FSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRR-QIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYKA 576
F NF+ G F GV L + GL VE AV K R Q+ + DT+ L++ + L KR L +I GL+ F+ R L ++ F F+ M+ +PR+AAAF RFLMAP P LRLV +D A F++ + GIV+L G + ++ F V+NGVP GETR+GFW++ + +++I Y + A
Sbjct: 122 FGNFSAAHGGFGGVLSLFGVTALLLVVGLGVEYAVRTWLIKVRNPQVAEGDTT--LREALTFLFKRFLREIFGLVIFYVTVRALGRTILDPHQATFVAPFIGYMIWMPRIAAAFSRFLMAPKRPDLRLVNVNDRWASFIHRHIIGIVVLGGATIFVVQFNVINGVPAGETRIGFWIDSMVYLYIAYVAWTA 310
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: UPI001AD96C85 (mechanosensitive ion channel family protein n=1 Tax=Shimia sp. R10_1 TaxID=2821095 RepID=UPI001AD96C85) HSP 1 Score: 119 bits (299), Expect = 7.090e-28 Identity = 69/192 (35.94%), Postives = 109/192 (56.77%), Query Frame = 1
Query: 10 FANFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDG---LKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYKA 576
F NF G G L + +G A L + L V I W +I+ + + G L++++ L KR L +I GL+ F+ R++ ++ F F+ M+ +PR+AAAF RFLMAP P LRLV D A F++ + GIV+L G + ++ F V+NG+P GETR+GFW++ + ++++GY V+ A
Sbjct: 121 FQNFGTNHGGLGGVLTL---IGLTALVLAIGLGVEYIVRTWLIKIRNPEANQGHASLRESIVFLFKRFLREIFGLVIFYITIRIVGRNILDAQQVTFVAPFIGYMIWMPRIAAAFSRFLMAPNRPDLRLVNVSDRWAGFIHRHLIGIVVLGGATIFVVDFNVLNGIPAGETRIGFWIDTMVYVYVGYVVWTA 309
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Match: A0A1G6XKZ4_9RHOB (Small-conductance mechanosensitive channel n=1 Tax=Ruegeria marina TaxID=639004 RepID=A0A1G6XKZ4_9RHOB) HSP 1 Score: 118 bits (296), Expect = 1.790e-27 Identity = 71/187 (37.97%), Postives = 104/187 (55.61%), Query Frame = 1
Query: 16 NFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQMDTSDGLKQTMELLGKRLLLDIVGLLAFFAVTRVLVLVLVPESDRRFADIFMVSMVVLPRLAAAFGRFLMAPYAPSLRLVYTDDWTAKFLYYNQTGIVLLAGFSYAIISFQVMNGVPMGETRLGFWLNLITFIWIGYAVYKA 576
NF G SG+ L A+A G E A T + W R++ ++D L+ + L +R +I+GL+ F+ V + L+ D FA F++ M+ +PRL AA RF++AP P +RLV DD AK+L+ NQ G+ LL GF+ I++F +NG+ MGE RLGFWLNL +I + A
Sbjct: 119 NFTTTFGTSGLASLFGFTFLALAIGYAAEKAATYLTRSWLRKVPS-GSADDLRGAVGFLFRRFCREILGLVVFYYVLVFVGRRLLSPEDIAFAAPFVLYMIWVPRLGAALSRFILAPERPEMRLVNIDDHWAKYLHRNQIGLFLLIGFTLFIVTFNGLNGIAMGEMRLGFWLNLSIHAYIAIIAWTA 304 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110592.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig110592.2215.1 >prot_M-pyrifera_M_contig110592.2215.1 ID=prot_M-pyrifera_M_contig110592.2215.1|Name=mRNA_M-pyrifera_M_contig110592.2215.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp ASGFANFAKPRGFSGVFLLIAAMVGAIAGGLIVELAVTRIASKWRRQIQQback to top mRNA from alignment at M-pyrifera_M_contig110592:3..578- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig110592.2215.1 ID=mRNA_M-pyrifera_M_contig110592.2215.1|Name=mRNA_M-pyrifera_M_contig110592.2215.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig110592:3..578- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig110592:3..578- >mRNA_M-pyrifera_M_contig110592.2215.1 ID=mRNA_M-pyrifera_M_contig110592.2215.1|Name=mRNA_M-pyrifera_M_contig110592.2215.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig110592:3..578- (Macrocystis pyrifera P11B4 male)back to top |