mRNA_M-pyrifera_M_contig110551.2212.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110551.2212.1
Unique NamemRNA_M-pyrifera_M_contig110551.2212.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110551.2212.1 vs. uniprot
Match: A0A812XZZ1_9DINO (SigW protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XZZ1_9DINO)

HSP 1 Score: 140 bits (352), Expect = 8.720e-37
Identity = 74/138 (53.62%), Postives = 97/138 (70.29%), Query Frame = 1 
Query:    1 DGEVSDEMQREIANALNYDKSRRQEFLDTADAINALRLD-VDVPDFAGSVLGRLDRQDRFIPASWQRIVRNSRLGLAAGLLLALVCVAGLQRVYPRLSTIGVQDTPLRDVAQAVETDADQVQQCIVDEAMQVRAALLP 411
            DGE+ D MQ EIA+AL YD  RR E L+TADA+ A+ LD + +PD   +VL RLD  +RFIP + +R VR  R+ +AAG+LL L+ VAGLQ VYPRL+TIG Q TP+ DVA AVE D  +V + +  +  Q+RA+L P
Sbjct:  226 DGEICDRMQEEIAHALQYDHERRAELLETADAVRAMNLDDIPMPDMQCAVLNRLDEHERFIPRTMRRWVRTGRMAIAAGILLGLMLVAGLQSVYPRLTTIGAQSTPVHDVATAVEQDTQRVAENVQSQVAQMRASLSP 363
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BLAST of mRNA_M-pyrifera_M_contig110551.2212.1 vs. uniprot
Match: A0A3D4UG67_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UG67_9BACT)

HSP 1 Score: 112 bits (279), Expect = 1.310e-27
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 1 
Query:   28 REIANALNYDKSRRQEFLDTADAINALRLDVDVPDFAGSVLGRLDRQDRFIPASWQRIVRNSRLGLAAGLLLALVCVAGLQRVYPRLSTIGVQDTPLRDVAQAVETDADQVQQCIVDEAMQVRAALLP 411
            +EI NAL YD +RRQEF DT DAI ALR+ V++PD +  VL R DR  RF+P   ++ VR  R+ +A  LL+ L+ VA LQ +YPRL+TI  Q TP+ D+  AVE D  Q+ + + +E   +R  + P
Sbjct:   42 KEIGNALQYDPARRQEFHDTRDAIEALRMPVEMPDLSDKVLQRADRHRRFLPRKLRQQVRAGRVAMAGLLLVGLMGVATLQHMYPRLTTIASQQTPVHDLQNAVEHDGAQIAEALGNEVTTIRQKVAP 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110551.2212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A812XZZ1_9DINO8.720e-3753.62SigW protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A3D4UG67_9BACT1.310e-2746.88Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110551contigM-pyrifera_M_contig110551:187..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size411
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.8209531-CDS-M-pyrifera_M_contig110551:186..5761622815616.8209531-CDS-M-pyrifera_M_contig110551:186..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110551 187..576 -
1692277489.2885273-CDS-M-pyrifera_M_contig110551:186..5761692277489.2885273-CDS-M-pyrifera_M_contig110551:186..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110551 187..576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.8382928-UTR-M-pyrifera_M_contig110551:576..5971622815616.8382928-UTR-M-pyrifera_M_contig110551:576..597Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110551 577..597 -
1692277489.3020732-UTR-M-pyrifera_M_contig110551:576..5971692277489.3020732-UTR-M-pyrifera_M_contig110551:576..597Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110551 577..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110551.2212.1prot_M-pyrifera_M_contig110551.2212.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110551 187..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110551.2212.1

>prot_M-pyrifera_M_contig110551.2212.1 ID=prot_M-pyrifera_M_contig110551.2212.1|Name=mRNA_M-pyrifera_M_contig110551.2212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MQREIANALNYDKSRRQEFLDTADAINALRLDVDVPDFAGSVLGRLDRQD
RFIPASWQRIVRNSRLGLAAGLLLALVCVAGLQRVYPRLSTIGVQDTPLR
DVAQAVETDADQVQQCIVDEAMQVRAALLP
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mRNA from alignment at M-pyrifera_M_contig110551:187..597-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110551.2212.1 ID=mRNA_M-pyrifera_M_contig110551.2212.1|Name=mRNA_M-pyrifera_M_contig110551.2212.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig110551:187..597- (Macrocystis pyrifera P11B4 male)
GACGGCGAAGTCTCCGACGAGATGCAGCGAGAGATTGCCAATGCGCTCAA
CTACGACAAATCACGCCGACAGGAGTTCCTCGACACCGCTGATGCAATCA
ACGCGCTGCGTTTGGATGTAGATGTGCCCGACTTCGCGGGATCCGTGCTG
GGTCGACTCGATCGTCAGGATCGTTTCATCCCCGCTTCATGGCAGCGAAT
CGTTCGTAACAGTCGACTCGGACTCGCAGCAGGATTGCTGCTCGCGCTCG
TCTGCGTCGCTGGACTCCAGCGTGTGTATCCGAGATTGAGCACGATCGGC
GTGCAAGATACACCGCTGCGTGATGTTGCCCAAGCAGTCGAGACAGATGC
AGATCAAGTGCAGCAGTGCATCGTCGATGAAGCGATGCAAGTGCGTGCAG
CGTTGCTTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110551:187..597-

>mRNA_M-pyrifera_M_contig110551.2212.1 ID=mRNA_M-pyrifera_M_contig110551.2212.1|Name=mRNA_M-pyrifera_M_contig110551.2212.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig110551:187..597- (Macrocystis pyrifera P11B4 male)
ATGCAGCGAGAGATTGCCAATGCGCTCAACTACGACAAATCACGCCGACA
GGAGTTCCTCGACACCGCTGATGCAATCAACGCGCTGCGTTTGGATGTAG
ATGTGCCCGACTTCGCGGGATCCGTGCTGGGTCGACTCGATCGTCAGGAT
CGTTTCATCCCCGCTTCATGGCAGCGAATCGTTCGTAACAGTCGACTCGG
ACTCGCAGCAGGATTGCTGCTCGCGCTCGTCTGCGTCGCTGGACTCCAGC
GTGTGTATCCGAGATTGAGCACGATCGGCGTGCAAGATACACCGCTGCGT
GATGTTGCCCAAGCAGTCGAGACAGATGCAGATCAAGTGCAGCAGTGCAT
CGTCGATGAAGCGATGCAAGTGCGTGCAGCGTTGCTTCCTATGCAGCGAG
AGATTGCCAATGCGCTCAACTACGACAAATCACGCCGACAGGAGTTCCTC
GACACCGCTGATGCAATCAACGCGCTGCGTTTGGATGTAGATGTGCCCGA
CTTCGCGGGATCCGTGCTGGGTCGACTCGATCGTCAGGATCGTTTCATCC
CCGCTTCATGGCAGCGAATCGTTCGTAACAGTCGACTCGGACTCGCAGCA
GGATTGCTGCTCGCGCTCGTCTGCGTCGCTGGACTCCAGCGTGTGTATCC
GAGATTGAGCACGATCGGCGTGCAAGATACACCGCTGCGTGATGTTGCCC
AAGCAGTCGAGACAGATGCAGATCAAGTGCAGCAGTGCATCGTCGATGAA
GCGATGCAAGTGCGTGCAGCGTTGCTTCCT
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