mRNA_M-pyrifera_M_contig110534.2208.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110534.2208.1
Unique NamemRNA_M-pyrifera_M_contig110534.2208.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A5A8DR10_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DR10_CAFRO)

HSP 1 Score: 162 bits (409), Expect = 7.870e-45
Identity = 76/150 (50.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    1 PGHFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            P  F  MEDDFRLCP+    + Y V K++ +   WI LRISYGL G ++ G D+AA   +L    + RPPDH+LVEW+A E  E+  Y   R  FA R+NL +H G VSSL    +G FAGCY+ +D   LFEVEAFK   CP++DVWPC
Sbjct:  284 PDLFFVMEDDFRLCPHFFQVLDYAVAKMARVQARWIALRISYGLAGAVVPGKDIAALADYLRRHVQRRPPDHLLVEWFAGESPESARYKMDRKHFAFRHNLLQHFGTVSSLRGAKQGRFAGCYEALDTGSLFEVEAFKPDVCPNEDVWPC 433          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A7S1C7T6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7T6_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.430e-44
Identity = 76/147 (51.70%), Postives = 94/147 (63.95%), Query Frame = 1
Query:   10 FMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            +MFMEDDFR+CP+AL ++ YLV K   L  +WI+LR  +GLNGGLI   D A    +       RPPDH+LVEW+A ER + KAY   R   A RYNLFEH+G  SSL +     FA CY+ +    LF+VEAFK  EC H D+WPC
Sbjct:  148 YMFMEDDFRMCPHALRSLVYLVEKADRLYPNWILLRTCFGLNGGLIHAEDTAFLAGYYREHQARRPPDHMLVEWFAGERPQAKAYVGNRKHIAFRYNLFEHIGFHSSLRSTKATRFAACYEELTEPTLFQVEAFK-PECQHDDIWPC 293          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A3P3YJU1_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJU1_PLABS)

HSP 1 Score: 151 bits (381), Expect = 1.210e-41
Identity = 71/150 (47.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:    1 PGHFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            P +FMF+EDDF LCP+ L AI +L+ K    A DWI L ++ G+NG  ++  D+  F  +L    R RPPDH++VEW+A E E++ +Y K RP  A RYNL  H GA S+L     G    CY + D   +F VE+FKV EC H DVWPC
Sbjct:  188 PSYFMFLEDDFWLCPSGLEAILHLLAKAYRYAPDWIALVMAEGMNGIFLKRKDMPIFSDYLFEHQRRRPPDHLVVEWFAGETEQSASYRKDRPHLAFRYNLLRHRGAESTLRGSIGGTENSCYHVNDDGRMFNVESFKVDECDHDDVWPC 337          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A7S3FZY7_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3FZY7_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 1.060e-40
Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    7 HFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            H++FMEDDF LCPNA+ A+ YL+ K   +  +W+ +R SYGLNG ++R  D+   +++ L+R+  RPPDH++ EW  +E    K+Y K R +   +YNLF+HLG VSSL A    ++  CYD +    LF  EAFK  +C H D+ PC
Sbjct:  244 HYLFMEDDFELCPNAMQALLYLIGKAYRVHGNWLAIRTSYGLNGIILRDDDLDEMKEYYLSRYEARPPDHLMSEWTLKETTRAKSYLKDRTYICYKYNLFDHLGTVSSLRASSSPSYPRCYDKLGEPTLFANEAFKFNKCGHDDITPC 391          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: R1DNI9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DNI9_EMIHU)

HSP 1 Score: 148 bits (373), Expect = 3.500e-39
Identity = 74/158 (46.84%), Postives = 99/158 (62.66%), Query Frame = 1
Query:    7 HFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRG-PDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKE--------CPHQDVWPCT 453
            H + MEDD+ +CP+AL+A+QYL+ K     EDW+ LR+SYG NG ++RG  D+ + R+HL +    RPPDH+L EW++ ER +TKAY  GR +   R+NLF H+GA+S+L+        GCY LM  D L   E F  K         CPH DVWPCT
Sbjct:  219 HVLLMEDDWLVCPSALLALQYLIDKAYAYDEDWLALRVSYGFNGVVVRGGADLRSLRRHLESHPWRRPPDHLLFEWFSGERPDTKAYAAGRSYRVFRHNLFYHIGALSTLNQPKTRFTPGCYSLMY-DWLLPAEVFDEKASAARRRPACPHDDVWPCT 375          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A7S3H1Q4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1Q4_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.770e-38
Identity = 61/148 (41.22%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    7 HFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            +++F+EDD + C N L+A+QYL++K S    +W+ +R SYG+NG  +   D+  F  +LL     RPPDH++VEWYA E  E   Y   R     +YNLF H+G VS+L +    ++  CY+ +    +F+VEAF  ++CP  DVWPC
Sbjct:   65 YYLFLEDDMQFCNNGLLAMQYLLNKASRYHPNWLAIRASYGMNGIFMHNNDLETFADYLLKHQARRPPDHLVVEWYAGETPEAGKYRGKRANIGFKYNLFNHIGVVSTLRSQKSTSYPKCYEPLLEPTVFQVEAFNPRQCPRDDVWPC 212          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A0H5REB6_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5REB6_9EUKA)

HSP 1 Score: 140 bits (353), Expect = 1.830e-37
Identity = 62/150 (41.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:    1 PGHFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            P +F+F+EDDF +CP+ L AI +L+ K      +WI L +S G+NG +++  D+  F ++L++    RPPDH+++EW+A E  E+ AY +GRP    RYNL +H GA S+L          CYD+ D   +F+V +FK  +C H D+WPC
Sbjct:  198 PSYFVFIEDDFSVCPSGLEAILHLLKKAYRFFPNWIALAMSTGMNGIILKKQDMIPFAKYLVDHQTRRPPDHLIIEWFAGETRESAAYRQGRPHLTFRYNLMQHRGAASTLRDHPAQIVDDCYDVNDIGRMFDVMSFKAIDCGHDDIWPC 347          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A7S2MHH0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHH0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.870e-37
Identity = 61/148 (41.22%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    7 HFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            +FMF+EDD  LC N + +I++L+ +    + DWI +R S+G+NG  +RG D+  F  +L+     RPPDH++VEW+A E  ++  Y + R  F  RYNLF+HLG  S+L +        CY+ +   +LF +E+FK  ECP  D+WPC
Sbjct:  136 YFMFLEDDMTLCDNGIQSIRHLLERGEAYSSDWIAIRASFGMNGIFMRGYDLPVFADYLVEHQARRPPDHLVVEWFAGEVPQSAKYKQQRGHFGFRYNLFDHLGKKSTLRSHEAKEMPMCYETLTFPILFLIESFKPNECPMDDLWPC 283          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: R1FF71_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FF71_EMIHU)

HSP 1 Score: 140 bits (354), Expect = 8.790e-37
Identity = 70/165 (42.42%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    7 HFMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRG-PDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVE---------------AFKVKECPHQDVWPCT 453
            H + MEDD+ +CP+AL+A+QYL+ K     EDW+ LR+SYG NG ++RG  D+ + R+HL +    RPPDH+L EW++ ER +TKAY  GR +   R+NLF H+GA+S+L+        GCY L+   +   V                A   + CPH DVWPCT
Sbjct:  164 HVLLMEDDWLVCPSALLALQYLLDKAYAYDEDWLALRVSYGFNGVVVRGGADLRSLRRHLESHPWRRPPDHLLFEWFSGERPDTKAYAAGRSYRVFRHNLFYHIGALSTLNQPKTRFTPGCYSLIFASINSLVRNSLLRAKASSTSLFSAVSEQACPHDDVWPCT 328          
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Match: A0A7S1U3S5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.310e-36
Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1
Query:   10 FMFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDVAAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEHLGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPC 450
            ++F+EDD  LCP    A++Y++ K +    +WI +R S+G+NG  I G DV  F  +L      RPPDH++VEW+A E+ ++ A  +GR   A RYN+F+HLG  S+L +     +  C++ ++  VLFE EAF  K+CP  D+WPC
Sbjct:  298 YLFLEDDMELCPRGFEAVRYVLEKATAYYGEWIAVRCSFGMNGIFITGDDVPIFANYLEEHQSRRPPDHLVVEWFAGEKPQSAAQKRGRVNGAFRYNIFKHLGLWSTLRSQKSPRYPACFEELNSKVLFEAEAFSAKDCPDDDLWPC 444          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110534.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DR10_CAFRO7.870e-4550.67Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A7S1C7T6_9STRA3.430e-4451.70Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3P3YJU1_PLABS1.210e-4147.33Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A7S3FZY7_9EUKA1.060e-4044.59Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
R1DNI9_EMIHU3.500e-3946.84Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3H1Q4_9STRA1.770e-3841.22Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0H5REB6_9EUKA1.830e-3741.33Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A7S2MHH0_9STRA4.870e-3741.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
R1FF71_EMIHU8.790e-3742.42Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S1U3S5_9STRA1.310e-3641.50Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110534contigM-pyrifera_M_contig110534:3..455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2903.EOD16045
Hectar predicted targeting categoryother localisation
EggNOG OGs2CXVF@1,2S024@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.66243-UTR-M-pyrifera_M_contig110534:2..141622815616.66243-UTR-M-pyrifera_M_contig110534:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110534 3..14 +
1692277489.220151-UTR-M-pyrifera_M_contig110534:2..141692277489.220151-UTR-M-pyrifera_M_contig110534:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110534 3..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.6763623-CDS-M-pyrifera_M_contig110534:14..4551622815616.6763623-CDS-M-pyrifera_M_contig110534:14..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110534 15..455 +
1692277489.235618-CDS-M-pyrifera_M_contig110534:14..4551692277489.235618-CDS-M-pyrifera_M_contig110534:14..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110534 15..455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110534.2208.1prot_M-pyrifera_M_contig110534.2208.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110534 15..455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110534.2208.1

>prot_M-pyrifera_M_contig110534.2208.1 ID=prot_M-pyrifera_M_contig110534.2208.1|Name=mRNA_M-pyrifera_M_contig110534.2208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MFMEDDFRLCPNALVAIQYLVHKISYLAEDWIMLRISYGLNGGLIRGPDV
AAFRQHLLNRHRERPPDHILVEWYAQEREETKAYGKGRPFFASRYNLFEH
LGAVSSLDAGGRGAFAGCYDLMDGDVLFEVEAFKVKECPHQDVWPCT
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mRNA from alignment at M-pyrifera_M_contig110534:3..455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110534.2208.1 ID=mRNA_M-pyrifera_M_contig110534.2208.1|Name=mRNA_M-pyrifera_M_contig110534.2208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig110534:3..455+ (Macrocystis pyrifera P11B4 male)
CCGGGACACTTTATGTTTATGGAAGATGACTTTCGTCTTTGTCCGAATGC TCTTGTTGCAATTCAATACCTCGTGCACAAGATCTCTTATCTTGCCGAGG ATTGGATCATGTTGAGGATATCATATGGATTAAATGGGGGTTTGATTCGT GGGCCTGATGTTGCTGCATTTCGGCAGCATCTCCTCAATCGACATCGAGA ACGTCCACCTGATCATATTTTAGTGGAGTGGTATGCCCAAGAACGAGAGG AAACCAAAGCATATGGGAAAGGCAGGCCTTTCTTCGCATCTCGTTACAAC CTCTTTGAGCATCTTGGCGCTGTGTCTTCACTTGATGCAGGTGGAAGAGG CGCTTTTGCTGGCTGTTATGATCTCATGGATGGAGATGTGTTGTTCGAAG TGGAAGCATTCAAAGTAAAAGAATGTCCTCATCAAGATGTGTGGCCTTGT ACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110534:3..455+

>mRNA_M-pyrifera_M_contig110534.2208.1 ID=mRNA_M-pyrifera_M_contig110534.2208.1|Name=mRNA_M-pyrifera_M_contig110534.2208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig110534:3..455+ (Macrocystis pyrifera P11B4 male)
ATGTTTATGGAAGATGACTTTCGTCTTTGTCCGAATGCTCTTGTTGCAAT
TCAATACCTCGTGCACAAGATCTCTTATCTTGCCGAGGATTGGATCATGT
TGAGGATATCATATGGATTAAATGGGGGTTTGATTCGTGGGCCTGATGTT
GCTGCATTTCGGCAGCATCTCCTCAATCGACATCGAGAACGTCCACCTGA
TCATATTTTAGTGGAGTGGTATGCCCAAGAACGAGAGGAAACCAAAGCAT
ATGGGAAAGGCAGGCCTTTCTTCGCATCTCGTTACAACCTCTTTGAGCAT
CTTGGCGCTGTGTCTTCACTTGATGCAGGTGGAAGAGGCGCTTTTGCTGG
CTGTTATGATCTCATGGATGGAGATGTGTTGTTCGAAGTGGAAGCATTCA
AAGTAAAAGAATGTCCTCATCAAGATGTGTGGCCTTGTACCATGTTTATG
GAAGATGACTTTCGTCTTTGTCCGAATGCTCTTGTTGCAATTCAATACCT
CGTGCACAAGATCTCTTATCTTGCCGAGGATTGGATCATGTTGAGGATAT
CATATGGATTAAATGGGGGTTTGATTCGTGGGCCTGATGTTGCTGCATTT
CGGCAGCATCTCCTCAATCGACATCGAGAACGTCCACCTGATCATATTTT
AGTGGAGTGGTATGCCCAAGAACGAGAGGAAACCAAAGCATATGGGAAAG
GCAGGCCTTTCTTCGCATCTCGTTACAACCTCTTTGAGCATCTTGGCGCT
GTGTCTTCACTTGATGCAGGTGGAAGAGGCGCTTTTGCTGGCTGTTATGA
TCTCATGGATGGAGATGTGTTGTTCGAAGTGGAAGCATTCAAAGTAAAAG
AATGTCCTCATCAAGATGTGTGGCCTTGTACC
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