mRNA_M-pyrifera_M_contig110521.2203.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110521.2203.1
Unique NamemRNA_M-pyrifera_M_contig110521.2203.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110521.2203.1 vs. uniprot
Match: A0A7C2ALQ1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2ALQ1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 4.530e-5
Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:    1 MNSSTRGAAKVSIMWMISVGVVALVGIVLAITANNDVTAARN---AQRSAEQETQAAVDQRTESIEKYSNLAEVVGWRG-ENGIGDSNLEAIADAKSLLRDNF-DLDESDETFEDMIPKLVAEVN 360
            M  S RGAA+VS +WMISVGVVALV +  A  + +D     +   A  +A+ E +A  D   E   K   L+  +GW   E+   +S++E    A   LR  F D+ ++D  FE ++PK+VA  N
Sbjct:    1 MLRSNRGAARVSAVWMISVGVVALVALAFAFISQSDQKKEVDRALAADAAKVEAEARADALNE---KKRELSTTLGWYDRESADPESDVEMARRALGDLRTTFPDIQDTDTDFETVLPKIVAAYN 122
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110521.2203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C2ALQ1_9BACT4.530e-537.60Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110521contigM-pyrifera_M_contig110521:10..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size522
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.4880958-CDS-M-pyrifera_M_contig110521:9..5311622815616.4880958-CDS-M-pyrifera_M_contig110521:9..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110521 10..531 -
1692277489.1440656-CDS-M-pyrifera_M_contig110521:9..5311692277489.1440656-CDS-M-pyrifera_M_contig110521:9..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110521 10..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110521.2203.1prot_M-pyrifera_M_contig110521.2203.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110521 10..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110521.2203.1

>prot_M-pyrifera_M_contig110521.2203.1 ID=prot_M-pyrifera_M_contig110521.2203.1|Name=mRNA_M-pyrifera_M_contig110521.2203.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MNSSTRGAAKVSIMWMISVGVVALVGIVLAITANNDVTAARNAQRSAEQE
TQAAVDQRTESIEKYSNLAEVVGWRGENGIGDSNLEAIADAKSLLRDNFD
LDESDETFEDMIPKLVAEVNKYKQMASDAQDAAAQARQSADQARADLSTI
TNQKDSTIDDQKKALADAQQGFDD
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mRNA from alignment at M-pyrifera_M_contig110521:10..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110521.2203.1 ID=mRNA_M-pyrifera_M_contig110521.2203.1|Name=mRNA_M-pyrifera_M_contig110521.2203.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig110521:10..531- (Macrocystis pyrifera P11B4 male)
ATGAACTCATCGACCCGCGGAGCCGCCAAGGTCTCCATCATGTGGATGAT
CAGCGTCGGCGTCGTCGCCCTTGTCGGCATCGTCCTCGCCATTACCGCGA
ACAACGACGTCACCGCGGCGCGGAACGCCCAGCGTTCTGCCGAGCAGGAG
ACCCAGGCTGCGGTCGACCAGCGCACCGAGAGCATCGAGAAGTACAGCAA
CCTGGCCGAGGTCGTCGGCTGGCGTGGGGAGAACGGCATCGGGGACTCGA
ACCTCGAGGCGATCGCCGACGCCAAGTCGCTCCTGCGCGACAACTTCGAC
CTCGACGAGAGCGACGAGACCTTCGAGGACATGATCCCGAAGCTCGTGGC
CGAGGTGAACAAGTACAAGCAGATGGCCAGCGACGCCCAGGACGCCGCCG
CCCAGGCGCGCCAGAGCGCCGACCAGGCCCGCGCCGACCTGTCGACGATC
ACGAACCAGAAGGACTCGACGATCGACGACCAGAAGAAGGCCCTCGCCGA
CGCCCAGCAGGGCTTCGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110521:10..531-

>mRNA_M-pyrifera_M_contig110521.2203.1 ID=mRNA_M-pyrifera_M_contig110521.2203.1|Name=mRNA_M-pyrifera_M_contig110521.2203.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig110521:10..531- (Macrocystis pyrifera P11B4 male)
ATGAACTCATCGACCCGCGGAGCCGCCAAGGTCTCCATCATGTGGATGAT
CAGCGTCGGCGTCGTCGCCCTTGTCGGCATCGTCCTCGCCATTACCGCGA
ACAACGACGTCACCGCGGCGCGGAACGCCCAGCGTTCTGCCGAGCAGGAG
ACCCAGGCTGCGGTCGACCAGCGCACCGAGAGCATCGAGAAGTACAGCAA
CCTGGCCGAGGTCGTCGGCTGGCGTGGGGAGAACGGCATCGGGGACTCGA
ACCTCGAGGCGATCGCCGACGCCAAGTCGCTCCTGCGCGACAACTTCGAC
CTCGACGAGAGCGACGAGACCTTCGAGGACATGATCCCGAAGCTCGTGGC
CGAGGTGAACAAGTACAAGCAGATGGCCAGCGACGCCCAGGACGCCGCCG
CCCAGGCGCGCCAGAGCGCCGACCAGGCCCGCGCCGACCTGTCGACGATC
ACGAACCAGAAGGACTCGACGATCGACGACCAGAAGAAGGCCCTCGCCGA
CGCCCAGCAGGGCTTCGACGACATGAACTCATCGACCCGCGGAGCCGCCA
AGGTCTCCATCATGTGGATGATCAGCGTCGGCGTCGTCGCCCTTGTCGGC
ATCGTCCTCGCCATTACCGCGAACAACGACGTCACCGCGGCGCGGAACGC
CCAGCGTTCTGCCGAGCAGGAGACCCAGGCTGCGGTCGACCAGCGCACCG
AGAGCATCGAGAAGTACAGCAACCTGGCCGAGGTCGTCGGCTGGCGTGGG
GAGAACGGCATCGGGGACTCGAACCTCGAGGCGATCGCCGACGCCAAGTC
GCTCCTGCGCGACAACTTCGACCTCGACGAGAGCGACGAGACCTTCGAGG
ACATGATCCCGAAGCTCGTGGCCGAGGTGAACAAGTACAAGCAGATGGCC
AGCGACGCCCAGGACGCCGCCGCCCAGGCGCGCCAGAGCGCCGACCAGGC
CCGCGCCGACCTGTCGACGATCACGAACCAGAAGGACTCGACGATCGACG
ACCAGAAGAAGGCCCTCGCCGACGCCCAGCAGGGCTTCGACGAC
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