mRNA_M-pyrifera_M_contig110493.2195.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110493.2195.1
Unique NamemRNA_M-pyrifera_M_contig110493.2195.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: E4YJF1_OIKDI (UBC core domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4YJF1_OIKDI)

HSP 1 Score: 108 bits (269), Expect = 1.090e-28
Identity = 47/68 (69.12%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   22 SQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            +Q+YHPN D DGN CLNILREDW+PVL+++SVI GL FLFLEPNP DPLN + A+V+KRD+++FE+NV
Sbjct:   43 TQVYHPNIDLDGNVCLNILREDWKPVLNINSVIYGLQFLFLEPNPDDPLNKEAADVLKRDKRQFEQNV 110
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BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: E4XTE5_OIKDI (UBC core domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XTE5_OIKDI)

HSP 1 Score: 107 bits (266), Expect = 1.290e-27
Identity = 46/68 (67.65%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   22 SQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            +Q+YHPN D DGN CLNILREDW+PVL+++SVI GL FLFLEPNP DPLN + A+V+KRD++++E+NV
Sbjct:   95 TQVYHPNIDLDGNVCLNILREDWKPVLNINSVIYGLQFLFLEPNPDDPLNKEAADVLKRDKRQYEQNV 162
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: A0A6J3KNT2_9HYME (NEDD8-conjugating enzyme Ubc12 isoform X2 n=6 Tax=Apocrita TaxID=7400 RepID=A0A6J3KNT2_9HYME)

HSP 1 Score: 102 bits (254), Expect = 3.690e-26
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   22 SQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            +Q+YHPN D DGN CLNILREDW+PVL+++S++ GL +LFLEPNP DPLN D AEV++ + + FE+NV
Sbjct:   64 TQVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKDAAEVLQNNRRAFEQNV 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: A0A388LQ17_CHABU (UBC core domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LQ17_CHABU)

HSP 1 Score: 103 bits (256), Expect = 4.490e-26
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:   19 RSQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            ++++YHPN D +GN CLNILREDW+PVLS++S+I GL FLFL+PNP DPLNH+ AEV++ + ++FE NV
Sbjct:   96 KTKVYHPNIDLEGNVCLNILREDWKPVLSVNSIIYGLQFLFLDPNPDDPLNHEAAEVLRENPRQFETNV 164
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: R7QGH3_CHOCR (Ubiquitin-conjugating enzyme E2M n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGH3_CHOCR)

HSP 1 Score: 102 bits (255), Expect = 5.600e-26
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   28 LYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            +YHPN D +GN CLNILR+DW PVLSLSSV+ GL  LFLEPNP DPLN D AE++KRD  EF++NV
Sbjct:   94 IYHPNIDLEGNVCLNILRQDWNPVLSLSSVLYGLQLLFLEPNPDDPLNKDAAELLKRDRYEFQRNV 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: A0A0M8ZTF6_9HYME (NEDD8-conjugating enzyme Ubc12 n=1 Tax=Melipona quadrifasciata TaxID=166423 RepID=A0A0M8ZTF6_9HYME)

HSP 1 Score: 102 bits (254), Expect = 1.210e-25
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   22 SQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            +Q+YHPN D DGN CLNILREDW+PVL+++S++ GL +LFLEPNP DPLN D AEV++ + + FE+NV
Sbjct:  110 TQVYHPNIDLDGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKDAAEVLQNNRRAFEQNV 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: A0A7J6KR52_PEROL (NEDD8-conjugating enzyme Ubc12 n=3 Tax=Perkinsus TaxID=28000 RepID=A0A7J6KR52_PEROL)

HSP 1 Score: 102 bits (253), Expect = 1.310e-25
Identity = 42/64 (65.62%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:   22 SQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEF 213
            +++YHPN D DGN CLNILREDW+P+LS+SSV+ GLL+LFLEPNP DPLN + AEV++ D ++F
Sbjct:  100 TKIYHPNIDLDGNVCLNILREDWKPILSISSVVYGLLYLFLEPNPNDPLNKEAAEVLRTDRRQF 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: A0A1X7U764_AMPQE (UBC core domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U764_AMPQE)

HSP 1 Score: 101 bits (252), Expect = 1.630e-25
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   22 SQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            +Q+YHPN D +GN CLNILREDW+PVL+++S+I GL FLFLEPNP DPLN D AEV++++ + FE+NV
Sbjct:   94 TQVYHPNIDLEGNVCLNILREDWKPVLTVNSIIYGLQFLFLEPNPDDPLNKDAAEVLRQNRRLFEQNV 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: A0A2R6W9P1_MARPO (UBC core domain-containing protein n=5 Tax=Embryophyta TaxID=3193 RepID=A0A2R6W9P1_MARPO)

HSP 1 Score: 101 bits (252), Expect = 1.670e-25
Identity = 42/69 (60.87%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   19 RSQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEFEKNV 225
            ++++YHPN D +GN CLNILREDW PVLS++S+I GL +LFL+PNP DPLNH+ AEV++ + ++FE NV
Sbjct:   97 KTKVYHPNIDLEGNVCLNILREDWNPVLSVNSIIYGLQYLFLDPNPDDPLNHEAAEVLRENPRQFENNV 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Match: A0A813FP50_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FP50_POLGL)

HSP 1 Score: 101 bits (252), Expect = 1.890e-25
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   22 SQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEPNPYDPLNHDVAEVMKRDEKEF 213
            +++YHPN D  GN CLNILREDW+PVLS+SSV+ GLL+LFLEPNP DPLNH+ AEV++ +  EF
Sbjct:  101 TKIYHPNIDLQGNVCLNILREDWKPVLSISSVVYGLLYLFLEPNPGDPLNHEAAEVLRNNRAEF 164
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110493.2195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E4YJF1_OIKDI1.090e-2869.12UBC core domain-containing protein n=1 Tax=Oikople... [more]
E4XTE5_OIKDI1.290e-2767.65UBC core domain-containing protein n=1 Tax=Oikople... [more]
A0A6J3KNT2_9HYME3.690e-2663.24NEDD8-conjugating enzyme Ubc12 isoform X2 n=6 Tax=... [more]
A0A388LQ17_CHABU4.490e-2662.32UBC core domain-containing protein n=1 Tax=Chara b... [more]
R7QGH3_CHOCR5.600e-2669.70Ubiquitin-conjugating enzyme E2M n=1 Tax=Chondrus ... [more]
A0A0M8ZTF6_9HYME1.210e-2563.24NEDD8-conjugating enzyme Ubc12 n=1 Tax=Melipona qu... [more]
A0A7J6KR52_PEROL1.310e-2565.63NEDD8-conjugating enzyme Ubc12 n=3 Tax=Perkinsus T... [more]
A0A1X7U764_AMPQE1.630e-2564.71UBC core domain-containing protein n=1 Tax=Amphime... [more]
A0A2R6W9P1_MARPO1.670e-2560.87UBC core domain-containing protein n=5 Tax=Embryop... [more]
A0A813FP50_POLGL1.890e-2567.19Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110493contigM-pyrifera_M_contig110493:320..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score105.1
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog103372.F4WV58
KEGG koko:K10579
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045116,GO:0045879,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.Ubiquitin-conjugating enzyme
EggNOG OGs38GRW@33154,3BGX6@33208,3CRHA@33213,3SG5G@50557,41XBK@6656,46H7R@7399,KOG0420@1,KOG0420@2759
COG Functional cat.O
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.0744586-CDS-M-pyrifera_M_contig110493:319..4631622815616.0744586-CDS-M-pyrifera_M_contig110493:319..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110493 320..463 +
1692277488.9149697-CDS-M-pyrifera_M_contig110493:319..4631692277488.9149697-CDS-M-pyrifera_M_contig110493:319..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110493 320..463 +
1622815616.0868165-CDS-M-pyrifera_M_contig110493:515..5961622815616.0868165-CDS-M-pyrifera_M_contig110493:515..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110493 516..596 +
1692277488.9288864-CDS-M-pyrifera_M_contig110493:515..5961692277488.9288864-CDS-M-pyrifera_M_contig110493:515..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110493 516..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110493.2195.1prot_M-pyrifera_M_contig110493.2195.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110493 320..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110493.2195.1

>prot_M-pyrifera_M_contig110493.2195.1 ID=prot_M-pyrifera_M_contig110493.2195.1|Name=mRNA_M-pyrifera_M_contig110493.2195.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MCWTDTRSQLYHPNFDWDGNPCLNILREDWRPVLSLSSVIQGLLFLFLEP
NPYDPLNHDVAEVMKRDEKEFEKNV
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mRNA from alignment at M-pyrifera_M_contig110493:320..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110493.2195.1 ID=mRNA_M-pyrifera_M_contig110493.2195.1|Name=mRNA_M-pyrifera_M_contig110493.2195.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=277bp|location=Sequence derived from alignment at M-pyrifera_M_contig110493:320..596+ (Macrocystis pyrifera P11B4 male)
ATGTGCTGGACTGACACCCGGTCTCAGCTGTACCACCCAAACTTTGACTG
GGACGGCAATCCTTGCCTGAACATCTTGCGTGAAGATTGGAGGCCTGTTC
TGAGCCTTTCATCCGTGATTCAAGGGCTGTTGTTTCTATTCCTGGTATGT
ACTGGCACTTCGGAATCACTTGGTTGCCCAGCTGACCTCGGCTCAGGAAC
CGAACCCGTACGATCCCCTCAACCACGACGTGGCCGAGGTGATGAAGAGA
GACGAGAAGGAGTTCGAGAAGAACGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110493:320..596+

>mRNA_M-pyrifera_M_contig110493.2195.1 ID=mRNA_M-pyrifera_M_contig110493.2195.1|Name=mRNA_M-pyrifera_M_contig110493.2195.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig110493:320..596+ (Macrocystis pyrifera P11B4 male)
ATGTGCTGGACTGACACCCGGTCTCAGCTGTACCACCCAAACTTTGACTG
GGACGGCAATCCTTGCCTGAACATCTTGCGTGAAGATTGGAGGCCTGTTC
TGAGCCTTTCATCCGTGATTCAAGGGCTGTTGTTTCTATTCCTGATGTGC
TGGACTGACACCCGGTCTCAGCTGTACCACCCAAACTTTGACTGGGACGG
CAATCCTTGCCTGAACATCTTGCGTGAAGATTGGAGGCCTGTTCTGAGCC
TTTCATCCGTGATTCAAGGGCTGTTGTTTCTATTCCTGGAACCGAACCCG
TACGATCCCCTCAACCACGACGTGGCCGAGGTGATGAAGAGAGACGAGAA
GGAGTTCGAGAAGAACGTGGAACCGAACCCGTACGATCCCCTCAACCACG
ACGTGGCCGAGGTGATGAAGAGAGACGAGAAGGAGTTCGAGAAGAACGTG
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