mRNA_M-pyrifera_M_contig110490.2194.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110490.2194.1
Unique NamemRNA_M-pyrifera_M_contig110490.2194.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A7S0EXF5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EXF5_9EUKA)

HSP 1 Score: 134 bits (338), Expect = 1.070e-36
Identity = 69/116 (59.48%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQ-GHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            LK++VP+ IDRAIREII+PVV+RSVTI+C TTREL++KD+ +EP+E R+++AA LMVQ+LAGSLA VTCK+ LRV+  NHMRSL+Q      Q+++QV Q  + DNL++ C +IE+
Sbjct:   77 LKRIVPIAIDRAIREIISPVVERSVTISCVTTRELMLKDFAMEPDEQRMRKAAQLMVQNLAGSLALVTCKEPLRVACGNHMRSLMQQAAIDPQLLEQVTQVCSSDNLELGCTLIEK 192
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A7S3W673_EMIHU (Hypothetical protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W673_EMIHU)

HSP 1 Score: 135 bits (339), Expect = 1.590e-36
Identity = 69/117 (58.97%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQ--GHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            LK++VPL +DRAIREII+PVV+RSVTI+C TTREL++KD+ +EP+E R+++AA LMV +LAGSLA VTCK+ LRV+ +NHMR+LLQ  G    Q+++Q+ Q  + DNLD+ C +IE+
Sbjct:   82 LKRVVPLALDRAIREIISPVVERSVTISCVTTRELMLKDFAMEPDEMRMRKAAQLMVSNLAGSLALVTCKEPLRVACSNHMRALLQQAGSLDVQLMEQLVQVCSSDNLDLGCTLIEK 198
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A6U7EWL3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A6U7EWL3_9EUKA)

HSP 1 Score: 133 bits (334), Expect = 3.760e-36
Identity = 69/116 (59.48%), Postives = 95/116 (81.90%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQ-GHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            LK++VP+ IDRAIREII PVV+RSVTIAC TTREL++KD+ +EP+E R+K+AA LM Q+LAGSLA VTCK+ LRV+ +++MR+LLQ    + Q+++QV Q  T +NLD+ C +IE+
Sbjct:   63 LKRVVPVAIDRAIREIIQPVVERSVTIACVTTRELMLKDFAMEPDEGRMKQAAQLMAQTLAGSLALVTCKEPLRVACSSNMRTLLQQAGAETQLMEQVVQVCTSENLDLCCTLIEK 178
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A176WFJ4_MARPO (Uncharacterized protein n=3 Tax=Embryophyta TaxID=3193 RepID=A0A176WFJ4_MARPO)

HSP 1 Score: 136 bits (343), Expect = 5.640e-35
Identity = 69/115 (60.00%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQGHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            L ++VP+ ++RAIREII+PVVDRSVTIAC TTRELVIKD+ +E +E R  ++A LMV SL+GSLA VTCK+ LRV++ANH+RSL Q H    +++Q  Q VT DNLD+ C +IE+
Sbjct: 1367 LSRIVPVAMERAIREIISPVVDRSVTIACMTTRELVIKDYAMEADENRTHQSANLMVASLSGSLAHVTCKEPLRVAMANHLRSLFQAHVGGDVLEQAVQLVTNDNLDLGCAVIEK 1481
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A7S0R7L6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R7L6_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 7.280e-35
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMR-SLLQ--GHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            LK+++PL +DRAIREI+ PVV+RSVTIAC TTRELV+KD+ +EP+E R+++AA LMV SLAGSLA VTCK+ LRVSI   +R +LLQ  G    QI++Q  Q  T DNLD+ C +IE+
Sbjct:   50 LKRLLPLALDRAIREIVAPVVERSVTIACMTTRELVLKDFAMEPDETRMRKAAHLMVCSLAGSLALVTCKEPLRVSIMTQLRQALLQLSGAGAEQIVEQAVQVSTADNLDLGCALIEK 167
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: R1DFP5_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DFP5_EMIHU)

HSP 1 Score: 135 bits (339), Expect = 1.960e-34
Identity = 69/117 (58.97%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQ--GHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            LK++VPL +DRAIREII+PVV+RSVTI+C TTREL++KD+ +EP+E R+++AA LMV +LAGSLA VTCK+ LRV+ +NHMR+LLQ  G    Q+++Q+ Q  + DNLD+ C +IE+
Sbjct: 1578 LKRVVPLALDRAIREIISPVVERSVTISCVTTRELMLKDFAMEPDEMRMRKAAQLMVSNLAGSLALVTCKEPLRVACSNHMRALLQQAGSLDVQLMEQLVQVCSSDNLDLGCTLIEK 1694
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A7S4BJK2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BJK2_CHRCT)

HSP 1 Score: 133 bits (335), Expect = 6.710e-34
Identity = 69/117 (58.97%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQ--GHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            LK++VPL +DRAIREII+PVV+RSVTI+C TTREL++KD+ +EP+E R+++AA LMVQ+LAGSLA VTCK+ LRV+  NH+R LLQ  G D + +++QV Q  + DN+D+ C +IE+
Sbjct:  853 LKRVVPLALDRAIREIISPVVERSVTISCVTTRELMLKDFAMEPDEMRMRKAAQLMVQNLAGSLASVTCKEPLRVACGNHLRVLLQQAGVDSS-LVEQVVQLCSADNMDLGCTLIEK 968
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A1Y1IDP0_KLENI (CCR4-NOT transcription complex subunit 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDP0_KLENI)

HSP 1 Score: 130 bits (326), Expect = 1.100e-32
Identity = 71/117 (60.68%), Postives = 92/117 (78.63%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQG--HDQAQIIDQVAQKVTLDNLDMACRIIER 345
            L ++V L ++RAI EIITPVVDRSVTIAC TTRELV+KD+ LE EE R  +AA LMV SLAGSLA VTCK+ LRV++A+H+R+LLQ   +  A I++Q  Q +T DNLD+AC ++E+
Sbjct: 1141 LPRVVSLAMERAIVEIITPVVDRSVTIACMTTRELVLKDYALEAEENRTHKAANLMVASLAGSLAHVTCKEPLRVALASHLRTLLQAAANLNADILEQAVQLITNDNLDLACAVVEK 1257
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A2K1KIP2_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KIP2_PHYPA)

HSP 1 Score: 130 bits (326), Expect = 1.110e-32
Identity = 67/115 (58.26%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQGHDQAQIIDQVAQKVTLDNLDMACRIIER 345
            L ++VPL ++RAIREII+PVVDRSVTIAC TTRELV+KD+ +E +E R  ++A LMV SLAGSLA VTCK+ LRVS+AN++R+ LQ      +++Q    VT DNLD+ C +IE+
Sbjct: 1404 LARIVPLAMERAIREIISPVVDRSVTIACMTTRELVVKDYAMEADETRTNQSANLMVASLAGSLAHVTCKEPLRVSMANYLRTFLQTALAQDVLEQAVNLVTNDNLDLGCAVIEK 1518
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BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Match: A0A7S0X021_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X021_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 2.050e-32
Identity = 70/118 (59.32%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 LKKMVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAALLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQGHD---QAQIIDQVAQKVTLDNLDMACRIIER 345
            LK+ VP  +DRAI EI++PVV+RSVTIAC TT EL++KD+ L+P+E R+++AA LMV SLAGSLA VTCKD LRVS+AN++R+L+  H    +A ++D VA  V  DNLD+ C IIER
Sbjct: 1126 LKRHVPTAVDRAIYEILSPVVERSVTIACYTTVELLLKDFALDPDENRMRKAAHLMVSSLAGSLALVTCKDPLRVSLANNLRNLMAPHAGGLEAGVLDSVANVVVQDNLDLGCTIIER 1243
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110490.2194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0EXF5_9EUKA1.070e-3659.48Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S3W673_EMIHU1.590e-3658.97Hypothetical protein (Fragment) n=2 Tax=Emiliania ... [more]
A0A6U7EWL3_9EUKA3.760e-3659.48Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A176WFJ4_MARPO5.640e-3560.00Uncharacterized protein n=3 Tax=Embryophyta TaxID=... [more]
A0A7S0R7L6_9CHLO7.280e-3560.17Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
R1DFP5_EMIHU1.960e-3458.97Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S4BJK2_CHRCT6.710e-3458.97Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1Y1IDP0_KLENI1.100e-3260.68CCR4-NOT transcription complex subunit 1 n=1 Tax=K... [more]
A0A2K1KIP2_PHYPA1.110e-3258.26Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A7S0X021_9CHLO2.050e-3259.32Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110490contigM-pyrifera_M_contig110490:2..346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog2903.EOD13355
KEGG koko:K12604
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5103@1,KOG1831@2759
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size345
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.0254328-CDS-M-pyrifera_M_contig110490:1..3371622815616.0254328-CDS-M-pyrifera_M_contig110490:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110490 2..337 -
1692277488.8772962-CDS-M-pyrifera_M_contig110490:1..3371692277488.8772962-CDS-M-pyrifera_M_contig110490:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110490 2..337 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.0382113-UTR-M-pyrifera_M_contig110490:337..3461622815616.0382113-UTR-M-pyrifera_M_contig110490:337..346Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110490 338..346 -
1692277488.9033716-UTR-M-pyrifera_M_contig110490:337..3461692277488.9033716-UTR-M-pyrifera_M_contig110490:337..346Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110490 338..346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110490.2194.1prot_M-pyrifera_M_contig110490.2194.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110490 2..337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110490.2194.1

>prot_M-pyrifera_M_contig110490.2194.1 ID=prot_M-pyrifera_M_contig110490.2194.1|Name=mRNA_M-pyrifera_M_contig110490.2194.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MVPLGIDRAIREIITPVVDRSVTIACTTTRELVIKDWLLEPEEARIKEAA
LLMVQSLAGSLAQVTCKDLLRVSIANHMRSLLQGHDQAQIIDQVAQKVTL
DNLDMACRIIER
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mRNA from alignment at M-pyrifera_M_contig110490:2..346-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110490.2194.1 ID=mRNA_M-pyrifera_M_contig110490.2194.1|Name=mRNA_M-pyrifera_M_contig110490.2194.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig110490:2..346- (Macrocystis pyrifera P11B4 male)
CTCAAGAAGATGGTGCCGCTCGGCATCGACCGCGCCATCCGGGAGATCAT
CACACCGGTCGTCGACCGCTCGGTCACCATCGCCTGCACGACCACACGCG
AGCTGGTGATCAAGGACTGGCTGCTGGAGCCCGAGGAGGCGCGCATCAAG
GAGGCCGCCCTCCTCATGGTACAGTCGCTTGCAGGCAGCCTTGCACAGGT
CACCTGCAAGGACCTCCTCCGCGTCTCCATCGCAAATCACATGCGCTCCC
TCCTCCAGGGCCACGACCAGGCACAGATCATCGACCAGGTAGCCCAGAAG
GTCACGCTCGACAATCTCGACATGGCCTGCCGCATCATCGAGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110490:2..346-

>mRNA_M-pyrifera_M_contig110490.2194.1 ID=mRNA_M-pyrifera_M_contig110490.2194.1|Name=mRNA_M-pyrifera_M_contig110490.2194.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig110490:2..346- (Macrocystis pyrifera P11B4 male)
ATGGTGCCGCTCGGCATCGACCGCGCCATCCGGGAGATCATCACACCGGT
CGTCGACCGCTCGGTCACCATCGCCTGCACGACCACACGCGAGCTGGTGA
TCAAGGACTGGCTGCTGGAGCCCGAGGAGGCGCGCATCAAGGAGGCCGCC
CTCCTCATGGTACAGTCGCTTGCAGGCAGCCTTGCACAGGTCACCTGCAA
GGACCTCCTCCGCGTCTCCATCGCAAATCACATGCGCTCCCTCCTCCAGG
GCCACGACCAGGCACAGATCATCGACCAGGTAGCCCAGAAGGTCACGCTC
GACAATCTCGACATGGCCTGCCGCATCATCGAGCGCATGGTGCCGCTCGG
CATCGACCGCGCCATCCGGGAGATCATCACACCGGTCGTCGACCGCTCGG
TCACCATCGCCTGCACGACCACACGCGAGCTGGTGATCAAGGACTGGCTG
CTGGAGCCCGAGGAGGCGCGCATCAAGGAGGCCGCCCTCCTCATGGTACA
GTCGCTTGCAGGCAGCCTTGCACAGGTCACCTGCAAGGACCTCCTCCGCG
TCTCCATCGCAAATCACATGCGCTCCCTCCTCCAGGGCCACGACCAGGCA
CAGATCATCGACCAGGTAGCCCAGAAGGTCACGCTCGACAATCTCGACAT
GGCCTGCCGCATCATCGAGCGC
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