mRNA_M-pyrifera_M_contig110481.2188.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110481.2188.1
Unique NamemRNA_M-pyrifera_M_contig110481.2188.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110481.2188.1 vs. uniprot
Match: A0A4Q7KCX8_9PSEU (Uncharacterized protein n=1 Tax=Herbihabitans rhizosphaerae TaxID=1872711 RepID=A0A4Q7KCX8_9PSEU)

HSP 1 Score: 57.8 bits (138), Expect = 3.230e-7
Identity = 38/120 (31.67%), Postives = 50/120 (41.67%), Query Frame = 1 
Query:   58 LPDLAFDAVLARADHGEFSACLPRLLEIVTLPEADPEYAIAVFDRLELAAWTDWPDHERRPVERLLDLWWSTELALEPGNPPLHDVLAALARLDQPLGRWLRPWLEDLDGPGARHFVALV 417
            L    F A+    D  +    LPR+LEI    +    +A   F +L  A W DWPD ERR +ER  D  W   L L P +    DVL A     + L  +L  W  +   P       L+
Sbjct:   58 LSRFGFKALTTWGDVDDLRHFLPRMLEIAVTDDGWDLHA--TFVKLATARWWDWPDGERRAIERYADALWLHVLTLMPTSRSAADVLDAFGTAFEDLTPFLVIWRAEATEPARCQLADLL 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110481.2188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4Q7KCX8_9PSEU3.230e-731.67Uncharacterized protein n=1 Tax=Herbihabitans rhiz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110481contigM-pyrifera_M_contig110481:70..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.0
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog543632.JOJL01000002_gene8085
Hectar predicted targeting categoryother localisation
EggNOG OGs2CK13@1,2GVT9@201174,33002@2,4DKJI@85008
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.7245736-CDS-M-pyrifera_M_contig110481:69..5221622815615.7245736-CDS-M-pyrifera_M_contig110481:69..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110481 70..522 +
1692277488.7653227-CDS-M-pyrifera_M_contig110481:69..5221692277488.7653227-CDS-M-pyrifera_M_contig110481:69..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110481 70..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110481.2188.1prot_M-pyrifera_M_contig110481.2188.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110481 70..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110481.2188.1

>prot_M-pyrifera_M_contig110481.2188.1 ID=prot_M-pyrifera_M_contig110481.2188.1|Name=mRNA_M-pyrifera_M_contig110481.2188.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MIARSLAELWTIFAPKDSLLPDLAFDAVLARADHGEFSACLPRLLEIVTL
PEADPEYAIAVFDRLELAAWTDWPDHERRPVERLLDLWWSTELALEPGNP
PLHDVLAALARLDQPLGRWLRPWLEDLDGPGARHFVALVDDQLSSERWAE
V
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mRNA from alignment at M-pyrifera_M_contig110481:70..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110481.2188.1 ID=mRNA_M-pyrifera_M_contig110481.2188.1|Name=mRNA_M-pyrifera_M_contig110481.2188.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig110481:70..522+ (Macrocystis pyrifera P11B4 male)
ATGATCGCCCGATCGCTCGCGGAGCTGTGGACCATCTTCGCCCCCAAGGA
CTCGCTCCTGCCCGACCTGGCGTTCGACGCCGTGCTCGCCCGGGCCGACC
ATGGCGAGTTCTCGGCATGTCTGCCCCGGCTCCTCGAGATCGTCACCCTT
CCCGAGGCAGACCCCGAGTACGCCATCGCCGTCTTCGACCGTCTCGAGCT
CGCCGCCTGGACCGATTGGCCCGATCACGAGCGTCGTCCCGTCGAACGGC
TCCTCGACCTGTGGTGGTCGACCGAACTCGCACTCGAACCCGGGAACCCG
CCGCTCCACGACGTGTTGGCTGCGCTCGCTCGTCTCGACCAGCCGCTCGG
CCGCTGGCTCCGGCCATGGCTGGAAGACCTCGACGGTCCAGGGGCCCGGC
ACTTCGTGGCACTCGTCGACGATCAGCTCTCCTCGGAGCGATGGGCCGAG
GTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110481:70..522+

>mRNA_M-pyrifera_M_contig110481.2188.1 ID=mRNA_M-pyrifera_M_contig110481.2188.1|Name=mRNA_M-pyrifera_M_contig110481.2188.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig110481:70..522+ (Macrocystis pyrifera P11B4 male)
ATGATCGCCCGATCGCTCGCGGAGCTGTGGACCATCTTCGCCCCCAAGGA
CTCGCTCCTGCCCGACCTGGCGTTCGACGCCGTGCTCGCCCGGGCCGACC
ATGGCGAGTTCTCGGCATGTCTGCCCCGGCTCCTCGAGATCGTCACCCTT
CCCGAGGCAGACCCCGAGTACGCCATCGCCGTCTTCGACCGTCTCGAGCT
CGCCGCCTGGACCGATTGGCCCGATCACGAGCGTCGTCCCGTCGAACGGC
TCCTCGACCTGTGGTGGTCGACCGAACTCGCACTCGAACCCGGGAACCCG
CCGCTCCACGACGTGTTGGCTGCGCTCGCTCGTCTCGACCAGCCGCTCGG
CCGCTGGCTCCGGCCATGGCTGGAAGACCTCGACGGTCCAGGGGCCCGGC
ACTTCGTGGCACTCGTCGACGATCAGCTCTCCTCGGAGCGATGGGCCGAG
GTGATGATCGCCCGATCGCTCGCGGAGCTGTGGACCATCTTCGCCCCCAA
GGACTCGCTCCTGCCCGACCTGGCGTTCGACGCCGTGCTCGCCCGGGCCG
ACCATGGCGAGTTCTCGGCATGTCTGCCCCGGCTCCTCGAGATCGTCACC
CTTCCCGAGGCAGACCCCGAGTACGCCATCGCCGTCTTCGACCGTCTCGA
GCTCGCCGCCTGGACCGATTGGCCCGATCACGAGCGTCGTCCCGTCGAAC
GGCTCCTCGACCTGTGGTGGTCGACCGAACTCGCACTCGAACCCGGGAAC
CCGCCGCTCCACGACGTGTTGGCTGCGCTCGCTCGTCTCGACCAGCCGCT
CGGCCGCTGGCTCCGGCCATGGCTGGAAGACCTCGACGGTCCAGGGGCCC
GGCACTTCGTGGCACTCGTCGACGATCAGCTCTCCTCGGAGCGATGGGCC
GAGGTG
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