mRNA_M-pyrifera_M_contig110471.2187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110471.2187.1
Unique NamemRNA_M-pyrifera_M_contig110471.2187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: D7G5M6_ECTSI (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 8.480e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 165
            QIT+PIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR
Sbjct:  331 QITSPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 381
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A6H5JBC7_9PHAE (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.720e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 165
            QIT+PIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR
Sbjct:  510 QITSPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 560
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A835ZBW4_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBW4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.960e-22
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLH 162
            Q+T PIGVLL+VFESRPDSLPQIASLA+RSGNGLLLKGGKEAEHSNACLH
Sbjct:  446 QVTTPIGVLLVVFESRPDSLPQIASLALRSGNGLLLKGGKEAEHSNACLH 495
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: W4H1A3_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H1A3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.990e-22
Identity = 45/50 (90.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLH 162
            Q+TAPIGVLL+VFESRPDSLPQIA+LA+RSGNGLLLKGGKEA+HSNACLH
Sbjct:  400 QVTAPIGVLLVVFESRPDSLPQIAALALRSGNGLLLKGGKEAKHSNACLH 449
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A7S1X0S5_9CHLO (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X0S5_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 1.260e-21
Identity = 44/51 (86.27%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 165
            ++TAPIGVLLI+FE+RPD+LPQIASLAIRSGNGL+LKGGKEA HSNACLHR
Sbjct:  135 RVTAPIGVLLIIFEARPDALPQIASLAIRSGNGLMLKGGKEATHSNACLHR 185
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A1W0A8G2_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8G2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-21
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 165
            Q+T PIGVLLIVFESRPDSLPQIA+LA+RSGNGLLLKGGKEA HSNACLH+
Sbjct:  401 QLTCPIGVLLIVFESRPDSLPQIAALALRSGNGLLLKGGKEASHSNACLHK 451
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A6G0WZZ7_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZZ7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.230e-21
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLH 162
            Q+T PIGV+L+VFESRPDSLPQIA+LA+RSGNGL+LKGGKEA HSNACLH
Sbjct:  398 QVTTPIGVILVVFESRPDSLPQIAALALRSGNGLILKGGKEARHSNACLH 447
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A7S2WAW7_9STRA (Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAW7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.230e-21
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 LLSMQITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 165
            L+  ++T PIGVLLI+FESRPDSLPQIA+LAIRSGNGLLLKGG+EAEHSNA LHR
Sbjct:  419 LILSKVTVPIGVLLIIFESRPDSLPQIAALAIRSGNGLLLKGGREAEHSNATLHR 473
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BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A150G4I1_GONPE (Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G4I1_GONPE)

HSP 1 Score: 92.4 bits (228), Expect = 1.530e-20
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLHR 165
            +ITAPIGVLL++FE+RPD+LPQIASLAIRSGNGLLLKGGKEA HSNA LHR
Sbjct:  316 KITAPIGVLLVIFEARPDALPQIASLAIRSGNGLLLKGGKEAAHSNAALHR 366
[Close]
BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Match: A0A7S3CB07_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CB07_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 3.600e-20
Identity = 40/50 (80.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:   13 QITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACLH 162
            Q++AP+GVLLI+FE+RPD+LPQIASL+IRSGNGLLLKGGKEA HSN C+H
Sbjct:  128 QVSAPLGVLLIIFEARPDALPQIASLSIRSGNGLLLKGGKEASHSNRCIH 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110471.2187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5M6_ECTSI8.480e-2498.04Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
A0A6H5JBC7_9PHAE8.720e-2498.04Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
A0A835ZBW4_9STRA1.960e-2292.00Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=T... [more]
W4H1A3_9STRA4.990e-2290.00Delta-1-pyrroline-5-carboxylate synthase n=10 Tax=... [more]
A0A7S1X0S5_9CHLO1.260e-2186.27Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Tet... [more]
A0A1W0A8G2_9STRA1.270e-2188.24Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=T... [more]
A0A6G0WZZ7_9STRA8.230e-2184.00Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=A... [more]
A0A7S2WAW7_9STRA8.230e-2181.82Delta-1-pyrroline-5-carboxylate synthase n=2 Tax=R... [more]
A0A150G4I1_GONPE1.530e-2086.27Glutamate-5-semialdehyde dehydrogenase n=1 Tax=Gon... [more]
A0A7S3CB07_9CHLO3.600e-2080.00Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110471contigM-pyrifera_M_contig110471:339..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue8.3e-20
Seed eggNOG ortholog2880.D7G5M6
Preferred nameALDH18A1
KEGG rclassRC00002,RC00043,RC00684
KEGG koko:K12657
KEGG ReactionR00239,R03313
KEGG Pathwayko00330,ko01100,ko01110,ko01230,map00330,map01100,map01110,map01230
KEGG ModuleM00015
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000052,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004349,GO:0004350,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0005911,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006561,GO:0006591,GO:0006592,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009266,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010035,GO:0010154,GO:0016020,GO:0016053,GO:0016301,GO:0016310,GO:0016491,GO:0016620,GO:0016740,GO:0016772,GO:0016774,GO:0016903,GO:0017084,GO:0018130,GO:0019202,GO:0019240,GO:0019752,GO:0019866,GO:0022414,GO:0022622,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0042538,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0048229,GO:0048316,GO:0048364,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0055044,GO:0055114,GO:0061458,GO:0071704,GO:0099402,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700
EggNOG free text desc.glutamate-5-semialdehyde dehydrogenase activity
EggNOG OGsCOG0014@1,COG0263@1,KOG1154@2759,KOG4165@2759
EC1.2.1.41,2.7.2.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size165
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.6764083-CDS-M-pyrifera_M_contig110471:338..4941622815615.6764083-CDS-M-pyrifera_M_contig110471:338..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110471 339..494 -
1692277488.7448676-CDS-M-pyrifera_M_contig110471:338..4941692277488.7448676-CDS-M-pyrifera_M_contig110471:338..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110471 339..494 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.6911802-UTR-M-pyrifera_M_contig110471:494..5031622815615.6911802-UTR-M-pyrifera_M_contig110471:494..503Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110471 495..503 -
1692277488.756325-UTR-M-pyrifera_M_contig110471:494..5031692277488.756325-UTR-M-pyrifera_M_contig110471:494..503Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110471 495..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110471.2187.1prot_M-pyrifera_M_contig110471.2187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110471 339..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110471.2187.1

>prot_M-pyrifera_M_contig110471.2187.1 ID=prot_M-pyrifera_M_contig110471.2187.1|Name=mRNA_M-pyrifera_M_contig110471.2187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MQITAPIGVLLIVFESRPDSLPQIASLAIRSGNGLLLKGGKEAEHSNACL
HR
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mRNA from alignment at M-pyrifera_M_contig110471:339..503-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110471.2187.1 ID=mRNA_M-pyrifera_M_contig110471.2187.1|Name=mRNA_M-pyrifera_M_contig110471.2187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig110471:339..503- (Macrocystis pyrifera P11B4 male)
CTGCTGTCTATGCAGATTACTGCGCCAATCGGGGTTCTGCTTATCGTGTT
CGAGTCGAGGCCCGACTCGCTGCCCCAGATCGCTTCCCTCGCCATCCGGT
CGGGCAACGGTCTGCTCCTCAAGGGAGGCAAGGAAGCGGAGCACTCCAAC
GCCTGTTTGCATAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110471:339..503-

>mRNA_M-pyrifera_M_contig110471.2187.1 ID=mRNA_M-pyrifera_M_contig110471.2187.1|Name=mRNA_M-pyrifera_M_contig110471.2187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig110471:339..503- (Macrocystis pyrifera P11B4 male)
ATGCAGATTACTGCGCCAATCGGGGTTCTGCTTATCGTGTTCGAGTCGAG
GCCCGACTCGCTGCCCCAGATCGCTTCCCTCGCCATCCGGTCGGGCAACG
GTCTGCTCCTCAAGGGAGGCAAGGAAGCGGAGCACTCCAACGCCTGTTTG
CATAGGATGCAGATTACTGCGCCAATCGGGGTTCTGCTTATCGTGTTCGA
GTCGAGGCCCGACTCGCTGCCCCAGATCGCTTCCCTCGCCATCCGGTCGG
GCAACGGTCTGCTCCTCAAGGGAGGCAAGGAAGCGGAGCACTCCAACGCC
TGTTTGCATAGG
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