mRNA_M-pyrifera_M_contig11045.2185.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11045.2185.1
Unique NamemRNA_M-pyrifera_M_contig11045.2185.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11045.2185.1 vs. uniprot
Match: D7FZV3_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV3_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 2.170e-81
Identity = 171/330 (51.82%), Postives = 212/330 (64.24%), Query Frame = 1
Query:    4 TQISVVLTARDDLNQKKKRLESEISQQSQEQNDIYQYLRKKLKDNYVAIAVLETKVSRAHDERLTREKELIATAVDLGEKRESEKVRLVERLEVLDGELAGIEEFQENSAAYAQKLRDLEAKISGCKEAFHDELMALSSQVDEEWEKGRRKKDDRMKTAKKVAAKATQEKLSPKTKHRIEQNKKMMTELRFQCFEVEKMQHVRQGLLKANTMLLAQAASARHRVEELARRSQLLQRITRYMYHKARRHGF----GRFQSQSTP--LSACASGGEGVPQRGIGVAAGXXXXXXXXXXXXXXXGDSASGVLYKLAGMSVEERQQMLDLREEV 975
            +QI VVLT RD+L  ++  LE++  QQSQ+Q+DIYQYLR KLKDNYVAIA LE                               ++RL E+L  LD EL  I+E+QENS  Y Q L+D+EAKI+GCK+AF++E+  L+SQ++EEWE GRR K++R K  KK AAKATQE+L P+TKHRI QNKKMM+ELRFQCFEVEKM   RQGL+++NT+LLA++ASARHRVEELARRS LLQRI RYM+ K ++ G     G     S P  +  C   G      G    AG                   SG +Y+LAGMS EERQQMLDLREE+
Sbjct:   45 SQIEVVLTTRDNLVIQRAELETKAKQQSQDQSDIYQYLRNKLKDNYVAIAELEA------------------------------QIRLGEKLGTLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERRKITKKAAAKATQEQLGPRTKHRIAQNKKMMSELRFQCFEVEKMYRARQGLMESNTLLLAKSASARHRVEELARRSHLLQRIIRYMHQKLQKRGACLDDGSIGPNSAPEDVDDCERPGASPEIGGHAARAGRRSGSRGRH----------SGTVYRLAGMSEEERQQMLDLREEL 334          
BLAST of mRNA_M-pyrifera_M_contig11045.2185.1 vs. uniprot
Match: A0A6H5L4N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4N5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.640e-26
Identity = 76/147 (51.70%), Postives = 92/147 (62.59%), Query Frame = 1
Query:  556 MMTELRFQCFEVEKMQHVRQGLLKANTMLLAQAASARHRVEELARRSQLLQRITRYMYHKARRHG-------FGRFQSQSTPLSACASGGEGVPQRGIGVAAGXXXXXXXXXXXXXXXGDSASGVLYKLAGMSVEERQQMLDLREEV 975
            MM+ELRFQCFEVEKM   RQGL+++NT+LLA++ASARHRVEELARRS LLQRI RYM+ K ++ G        GR  S+   +  C   G   P+ G+  A G                    G +Y+LAGMS EERQQMLDLREEV
Sbjct:    1 MMSELRFQCFEVEKMYRARQGLMESNTLLLAKSASARHRVEELARRSHLLQRIIRYMHQKLQKRGACLDDGSIGR-NSEHKDVDGCERPGAS-PETGVHAAGGGRRGGSRGRHR---------GTVYRLAGMSEEERQQMLDLREEV 136          
BLAST of mRNA_M-pyrifera_M_contig11045.2185.1 vs. uniprot
Match: A0A836CFU2_9STRA (Cilia- and flagella-associated protein 157 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.660e-11
Identity = 64/242 (26.45%), Postives = 115/242 (47.52%), Query Frame = 1
Query:    4 TQISVVLTARDDLNQKKKRLESEISQQSQEQNDIYQYLRKKLKDNYVAIAVLETKVSRAHDERLTREKELIATAVDLGEKRESEKVRLVERLEVLDGELAGIEEFQENSAAYAQKLRDLEAKISGCKEAFHDELMALSSQVDEEWEKGRRKKDDRMKTAKKVAAKATQEKLSPKTKHRIEQNKKMMTELRFQCFEVEKMQHVRQGLLKANTMLLAQAASARHRVEELARRSQLLQRITRYMY 729
            +Q+  V   R     + + L+ ++ + +Q ++DI   L++K+  NY  IAVLE K+   H  R   E+ L      +   R SE+ R   R   L+  L  ++ F  N +    ++  L+ ++  C      E   L  +++E  E  R+   +R+  A++   +   ++L  +   R+++NK++ TEL FQC EV+++  V   L+  N   L++        E LAR S  LQ   R M+
Sbjct:   42 SQLETVCARRTQYLARLEELQVKVEEAAQGRSDIVAKLQEKVARNYDDIAVLEAKIEEEHVARQAEERRLQDVIAVIEAARTSERTRCEARRLELEATLTDLKGFLANKSTLESEIETLQRQLDECDSRHAAEKRELQERLEEAAEARRQDTLERISAARQAVVQQLGQQLGAQAMARVQENKRLATELHFQCMEVDRLSSVCSTLVHDNQSALSEMQLLAAEAETLARASTQLQASIRDMH 283          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11045.2185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZV3_ECTSI2.170e-8151.82Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L4N5_9PHAE2.640e-2651.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFU2_9STRA1.660e-1126.45Cilia- and flagella-associated protein 157 n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11045contigM-pyrifera_M_contig11045:372..10000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue5.9e-07
Seed eggNOG ortholog3055.EDO96356
Hectar predicted targeting categoryother localisation
EggNOG OGs28W9A@1,2R31A@2759,34MVQ@3041,37XAP@33090
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons7
Model size975
Cds size975
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.5055192-CDS-M-pyrifera_M_contig11045:371..5391622815615.5055192-CDS-M-pyrifera_M_contig11045:371..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 372..539 +
1692277488.6428406-CDS-M-pyrifera_M_contig11045:371..5391692277488.6428406-CDS-M-pyrifera_M_contig11045:371..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 372..539 +
1622815615.5179641-CDS-M-pyrifera_M_contig11045:1918..20081622815615.5179641-CDS-M-pyrifera_M_contig11045:1918..2008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 1919..2008 +
1692277488.6605816-CDS-M-pyrifera_M_contig11045:1918..20081692277488.6605816-CDS-M-pyrifera_M_contig11045:1918..2008Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 1919..2008 +
1622815615.5316567-CDS-M-pyrifera_M_contig11045:2919..30091622815615.5316567-CDS-M-pyrifera_M_contig11045:2919..3009Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 2920..3009 +
1692277488.6718795-CDS-M-pyrifera_M_contig11045:2919..30091692277488.6718795-CDS-M-pyrifera_M_contig11045:2919..3009Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 2920..3009 +
1622815615.5448525-CDS-M-pyrifera_M_contig11045:4196..43341622815615.5448525-CDS-M-pyrifera_M_contig11045:4196..4334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 4197..4334 +
1692277488.681557-CDS-M-pyrifera_M_contig11045:4196..43341692277488.681557-CDS-M-pyrifera_M_contig11045:4196..4334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 4197..4334 +
1622815615.5618567-CDS-M-pyrifera_M_contig11045:6615..66841622815615.5618567-CDS-M-pyrifera_M_contig11045:6615..6684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 6616..6684 +
1692277488.690846-CDS-M-pyrifera_M_contig11045:6615..66841692277488.690846-CDS-M-pyrifera_M_contig11045:6615..6684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 6616..6684 +
1622815615.5741732-CDS-M-pyrifera_M_contig11045:7796..80001622815615.5741732-CDS-M-pyrifera_M_contig11045:7796..8000Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 7797..8000 +
1692277488.702715-CDS-M-pyrifera_M_contig11045:7796..80001692277488.702715-CDS-M-pyrifera_M_contig11045:7796..8000Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 7797..8000 +
1622815615.5887423-CDS-M-pyrifera_M_contig11045:9784..100001622815615.5887423-CDS-M-pyrifera_M_contig11045:9784..10000Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 9785..10000 +
1692277488.7131243-CDS-M-pyrifera_M_contig11045:9784..100001692277488.7131243-CDS-M-pyrifera_M_contig11045:9784..10000Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11045 9785..10000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11045.2185.1prot_M-pyrifera_M_contig11045.2185.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11045 372..10000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11045.2185.1

>prot_M-pyrifera_M_contig11045.2185.1 ID=prot_M-pyrifera_M_contig11045.2185.1|Name=mRNA_M-pyrifera_M_contig11045.2185.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=325bp
MTQISVVLTARDDLNQKKKRLESEISQQSQEQNDIYQYLRKKLKDNYVAI
AVLETKVSRAHDERLTREKELIATAVDLGEKRESEKVRLVERLEVLDGEL
AGIEEFQENSAAYAQKLRDLEAKISGCKEAFHDELMALSSQVDEEWEKGR
RKKDDRMKTAKKVAAKATQEKLSPKTKHRIEQNKKMMTELRFQCFEVEKM
QHVRQGLLKANTMLLAQAASARHRVEELARRSQLLQRITRYMYHKARRHG
FGRFQSQSTPLSACASGGEGVPQRGIGVAAGSSGGEGGSDSGVVVPGDSA
SGVLYKLAGMSVEERQQMLDLREEV
back to top

mRNA from alignment at M-pyrifera_M_contig11045:372..10000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11045.2185.1 ID=mRNA_M-pyrifera_M_contig11045.2185.1|Name=mRNA_M-pyrifera_M_contig11045.2185.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9629bp|location=Sequence derived from alignment at M-pyrifera_M_contig11045:372..10000+ (Macrocystis pyrifera P11B4 male)
ATGACGCAGATCAGCGTGGTTCTTACGGCGCGGGACGACCTGAACCAAAA GAAGAAGCGGCTCGAGAGCGAGATAAGCCAACAATCGCAGGAGCAGAACG ACATTTACCAGTACCTCAGGAAGAAGCTCAAAGACAACTACGTTGCGATT GCTGTGTTGGAGACGAAGGTGAGAAAAGGGATCAGCCACGTATTAACATT GTTTATCCCCCCCCCCCCTCCGATAATGTATCGTGCATATTGCAGTCCAT TCGAATCGATTCCCCCCTACGAATGCAGGAGGAGAGCAGTATAGTCTCCT CTTAATCTATCACGCTGATTCAACAATAGTTTCTCCCAATTTCTCTCCTT GAAGACTCCTACTTACACCGCCCTCTCCCATGGCGAACCCTCGTTTTCCC TGCTCCTCGTTGACATTCCACCCCCATGTCATTGGCGTCAGTACGTACGC ATTCGTAGTGGCCTCGCCAAATATTCCCTTGCAAAAAGCGGTCGGTTTTG TGCTTCGTTTCTCGCCCCGGATAGTAGTGTTCTCCCCCTATCCAAATGAA CGTTGGCGAAAGAGAAAAAGCAAACATGGCAGGGGGGGGAGGCGTCGGCT AATACGTACCTTCAAAACGAAACTTAATAGACACCACTAGGACAGAGTGA GCTGATATGATATGCCGAAAAACGGCACGTCTCAAAACACCGTTTCCAGA TGTTCGCCTTTTCACGTGCGTAGCCTATCCCGCACCGAGGAGGGTCGAGT CGGATGAACATCACGCCCAGCAGAGAAAGTTGCGTCTACCATAGTCTTCT CGAACCTCCTCGCCTTGCCCTGAAGACTCTTCTCGCCAGGAAAACGTGGG CTCTCTCGCTCTCTCGCTCTCTCTCTTATCTCTTTGGCTCTATCTTTACC TCTATCTCTAGCTCTGTCTCTCTCTCTCTATATATATATATATATATATA TATTTTTTTTCCCCCGCTCTCTATTGGTAGTCACGAAAACACGCGCGATT GTTTTTGTGTATGTGTCCGGCAATGCTGTCAGTCATTCGCGCTACAGCCG AAATTGCCGCGACAGATATTTCGTTGCCGATCGTTGGGTGGGCGTGTGTG CGCAGCTGATGATGTAAACTGGCAGCCGCTCGTTTCACCCGGGTGTAACC GATGCTTCCAACCATGGACTGTTCGTTCCGTGTGTGTGACCGAAGTTTCA AACTCGTATGTTCGAATCCCCAGGTGTAGTTGATGCTTGAAACCAGCAGT CGCTCGTGCTGTGCGTGTAACCGATGTTTCAAGCCGTCTAGCTGTTTGAA CCATCCGCGGATGTAGTCGATGCTTCGAACCTGCAGCTGCTCGTTCTTTG GGTGTATCTGATGCTTCAAATTACTAGGTGTTCGAGCCCGTGGATGTAGT TGATGTTTGAAGCCAACACCCGCTCGTTCTGTGTGTGTGCCTGATGCTTC AAACCACCCAGCCATTCGGATCCACCGCCGACGCAAATGATGCTTCAAAC CAGCAGCTGATCGTTGTTTGGGTGTACCTGATGCTTCACACCGCCAGGTT TCGCGAGCTCACGATGAGAGGCTGACCCGAGAGAAGGAGCTGATCGCGAC CGCTGTGGACCTCGGGGAAAAACGTGAGAGCGAGAAGGTGCGAAGCATCA CAGTAAATGGTTTGGTGCTATGCACGGAGGAAAGCAAAAAAGGCAGCAAA ATGCAAGGCTGCTCGCTGCCCTAACCAACACGAGTAAGAGGAGAAGAGAG GGTTGTTCGGTTGGTTTTTCGTCGGACCAAGATCATGTGAGAAGAGGAAG GGCGAGGTTCAGCTTAGGAAGTTGGAGGTCGTGGTTTGGGCATTTAGTTG GTCAAAGACTTACCAGCATGTTGTGAGAAAAGTGTATGTGGTTAGCTTCG GTAACCTTGGGAAGACCCACTCCCCTCCCTCCCCTCCTCCGGCTCCCTTC CGCACCGGAGCGTCTGGCAAACAAGGCGTGTCTACGGAGCACTTTGTCTT TTGCAGCTTCACAGAAAAAAAGTCTCTAAACAAATTAGACACATATAGGC CTCCTCCGTGCAAGCTAAACCAACCTCAGGAAACACAGACTAAACACAGG CTGACCCAGTTCCTCGAGAATCAATCGTCCTCCAACCGCTTCATTGTTTA GAAGCTGCTAATTTTTCAGTTTAATTCCAAGTAGTTTGTCACCAAAAATA TGCGTGCAGTTTATGAGGGGTTCAAAAGTCTCCGTTCTCGTCCTTACATG TGCCTACCCAGGGTTCGAACCGTCCTCGCCTTGGGGGGGTATAGCCACGT AGTCCACGGCCTGTTGAGAAACTTCGCGTTGGAGAAGCCCGCACTACTTC GTCCCTTAGGGCAAGGTTTTTTCCACTGTATTGGAAGCCTGTCTATCATG ACGCTTAGCGCGGGAAGCCCGCATTTGATTCTTCTGTCTTGGAGAGCAAG AATTGTGCAACCAGGCGAACGCACTACTCCCACCTAGAACAAAACACGCA CTTTCCTCTTCCTCTTCTCCCCGGACGCTCGGACGTGTCCATTGGCAGGT ACGCCTCGTGGAGCGGCTAGAAGTCCTGGATGGAGAGCTGGCCGGAATCG AAGAGTTCCAGGAAAATTCAGCGGCATACGCGCAAAAGGTGCGCACACAA AAAACAAAACCGTTTTTTGGTGGTCGATGAAGCCTTCCGCTTGAGCTCGA CGTTTGCAGGCGGCCGGTTGTAGTCGGATATTGTACTCGTATGCGCGCAT AGCAGAACCGATACACACGCATGTGCTGGCATACGACAGGGATGTACTTA TTTTTTGCCTCCTGGGGCTACTTACTTGAGGGACCCCACACTATCACCAA GTCACGCAGCAATGACACTCACACGTGCTGTTATACGATAGGGTTTTTTT TTCCCCCTCCTGGGACTCCTCGCCTGGGGAGTTTTATGCCTTGCAACCCT ATTAGGACCGCAGTCCCGTTTTGGGAACAAATAACTCAGAACTTGAGTGC TTTGCTCCCGAACATAGGGCTGCAGTCCTAAGAGGTGGCTCACAGTAGGT ACAGAACGAACAACACGAAAAACACAGAAGGCGTTCCGACGATATTAGAT AGAGTCCGTCGGATTTGTTTCGGGCGAAACACAATGCTGCCTCTATCGTA ACAGAGGCGCCAAAATCACGACGATGACGCCACGCGGTACATACGTAGTC TTGAAAACAACGGAGATGTTGGCGAGATCGAGACAAGCTAATAGCGCGCG CATTTAAGACAAATGTGCAACAGGCTTTTGCTCCTGGTAGGTTTATATCG GGTACTCGGTGGAACACATGGGGAATACCAGGGAGAATTGTCCCACGAAC AGATAGGGGGACAGTTTCGAAGTTTGCCATTATCAAGGTCCTTCAGTGGA CGCGCTGCGGGCCTATTCGAAGCTTGCGTGGAGCTGGACTCGGGCGAATA GTGTCCTTCGTGATACCCCCCTCTGTTCGGAGATTTTTTGCTCTTGACTT GCTCTATGTTCCTGGACCGTTCTGGTTTGGCGAAACCATTTCTTTCTTCA GGGATTAGGTGGTGGAGCAAGGCAAGCGATTAACTCGTAGGTGTAAATAA GAGTTGCCGTCTCGTGGTGTCGCGGTGCGAAAAGTTCCCTCCGCCCAACA TATGACTTGCGCTAAATAAAAAACAGTGGGTGTCCGCGCGGTACGTAGAC TGCAGTAAGAGCAAACAAAGTGCACCGAGGCCGACTCTCACGCGCTTAGC CGCTCCCGCCCCCCCCCCCCAGCCCTCTCCCTCCCCCCCCCTGCCCTCGG CCTGCGTGACTGCTATTTTTACCAGTTGCGAGATCTGGAGGCGAAGATTT CGGGTTGCAAAGAAGCTTTCCACGACGAGCTAATGGCGTTGAGCTCGCAG GTCGACGAAGAATGGGAAAAAGGCCGCCGGAAGAAGGACGACAGGATGAA GACCGCAAAGAAGGTGGGCGCTGCGCTGCCGCCGCCGAGTCTCCGGAAAC GGTGTGCTGCGAATTTGTTCTTGACTGACGGGGGGGGGGGGGGAGAGGGA AGCGTCCTAATTTGTTGTTTGTCCTACAATAGCAACCTGACTAGTTACAC GGCGCATCCCTTTGGAGGCGGAGCAAATGTTCCAACTCCAGATAGAAGAC ACCTCCAACATTTTGTCGCCCGCCACGTTTTGCTTTCTTACATATATTGC ATATAAACTTATCCTCCCTACCGAACCTTTATCCTGCTCCATCTATCTCC TTTGAAGGTAGCGATCGCTGACTTATGGAGGAGGGCCTCCCAGCTGAGGA CCCCCCCGTTTTGTCGATATAATCCTGCTCTCGTTTTCAATCATTGCGGG GGACCATAGTAAATAGGACCAAATATTGTAGGTAAAAATAGGGAAATGTA TAGGTTTATTGTAGGTAAAAATAGGGAAATGTATAGGTTTTTGTCTGTAC CGTACGTCCTATTTACGATGGTTCCCCGTAATACCATACTCAGTCAACGG CCTTTTTTTCTACCGTATTCGTTGGGCTAACTTGAGCACGCCATTTTTTT TCCCAAAAAGTAAAGTGCTTGGGTGAGGTATTTCGGAGAGCTCCTCAAGT GACGAGGTTCAGAACCATCAGGTGCTGCATACCCCTATACCTATATACCG TAGTAGCACTTGAGCCCAGGTGGGAACGTAGCCGCGATCGAATACTGCGA CGCCTCACAGTCCAAGTCGATATCCGCGTGGGTTTTTCTATACCTTGGAG AGGCCTTGACCCGTCCGGTCTCGGATGTTTGCGAGTCGCGTCGTCACGCC TGACAGTGCGGGTTGTACACAGTGCGAGCTGTTTGTTCGCCTGGGTCTCC TTGCCGTGGAGGCTTTGCGACATTATTCAGCGTGCCACTAATGTTCGGGA AAACAAATATCATAAAAGGGTTTGGGTATTAATAGGAATATCCAAACGGC CTTCCTTTATAGACCCTGTTGTGTTCTAGACCCCGCCATGATTAGTTTTG GGGCCGAAGCGCAAGCGCTAGGGAAACGCGCTGCTGCACCCCCGTTGTCC ACACGATTTTTTTCCCCTGCATTCTTGCTGTTGTGGTAGTTTTTTTTTCA GTCGCGAGTGCTGCTACGTTCGATAGGAGAAAGAGGGGAGTGTTCTCATT ATTGTGCATGACCGTAGTCGTATGACCATAGACCCCCGCATCCCTGCGAT ACCGGGACGGAGCACGTCGGGTTTTCACCGACCAGGCCGACATTGTTTGC ACCCAGCGCGAAGCGCCGTGAGGTGTCGCGCGAGTCGCATGAAGGGTGGG AGAGCATGGAGAGAGCTGCATCCCACCAAGAACCACTTTTCAGGCGGATT TTGTTGCATATGAATGACAGCATCAATGAAATGATTAATTTCCTGGTGTG GACACTTCCATAGACAACAATGGGTTTCCTACGTAATAGCTTCATCCGTG CCTTAGCATATACACACTACGTGATACGATCATCCCCCTTGTGCGGAGTA AATGTTCTCCCCGCACACAAATGAACTATCTCGACCGCCAACCGTGGTGA CCGCCTAAAAAATAAAACACGGTTGCCCTGGTTGTCTTGTTCACGAAGTA GCAGGCGTGTTTTACAGCGTCGTCGCCAACCGACGCTAACCCAACCTATG TATACCAGGTATACAATGTATAAGGATGGGGTATGGTACAGGGTTCATGA GTCCTTCTTTTCCAGCCACTCGCTCGGAGCACTCGGCTGAGTGGCTATAA CCCTACAATATTTTGCTTTGCCTTCTTAAGCTGGTTTTCGTTGTTGTCGT ACTTTTGGGTTTTCTGCGATATGAACCGCCACGAGATTGTTTCTTATGCT GCGTTAAAAAAACAGTATTTGAGTGAGGTACGGAGCCGCTCGCCCGAGCG GCCTAAACGCGGTGGTGAACATAGTGGCATCGTACCAACATTCACGGTGG GTAGCGACTATGTCCCGTCGGAAACCCCGCGAGGCCAACTCTCAGCAGTG CATCTTCCATTCAAATGGGCGTGTTCCATAGCAAGTATACGGGCTAACAA ATCAGACGCGTTCGAGCCGGGGGGTGTTTACGCTCTCAGGCTATCTCTCT TGCTCCCCCTCCCCCCCTCCCCCTCGGCATTGAAGGGATGCGAGGGTCTA TGGTCATACGACTAAAAGCCATGCATGACAATGGGTGCCCCCCCCCCCCC TCCCCCCGCGTCCGTTTGCTGCTTTTGTGTGTGGGCATTTTAAGGTCGCT GCGAAGGCCACGCAGGAAAAGCTGAGCCCCAAAACCAAGCACAGGATCGA GCAGAACAAAAAGGTAAGAGCGGTCTGGCGGCTCGCATTCGCAGGATCGT TCGCGAGCAACCTCTCGGTACTGCGCACGCCCACATCCGGAAGAGAGCTC GGACAGTTGTTTTGAACACTTTTTTTCCCGATTTTGAGCTCTCCGCAATC CATCCGTTTCTTTGCATCGGTAAGAAAGGGAACATCCAGCTCTAGAAATC ATAATCGCCTTCTCTTTTTTTTCCTAACGCACGGCCTTTAGCTACGTTTT TATCCGTGTGGGTACTGCCGGACAAGGTTCCAATGGCCCTCGTCCCAACG TCGGCGCCCCTGCCGCGCGTCAACCCAACCCGGTTCTGGTCGCGTTCTTG CGTCGCACGCTGTGAGCGCTTGATGCAGCAAAAAAATCGATCCCTGTGGA TTCGTCACCTCAAACAAAAGCGCAATGTGTGTGAGTGATCACTGTTGAAG CTCACGATGAACATTGTCGGATGGCAACCGCAACAAAAATACTAATTTCA TAAGTTTGCCCTATAATAGCTCCGGCCATACATTAATTAAATCCCCCCAC CCCTACCCTGTGTATATAGCGGTATATACAACAGTACGATTTCCCTGTGT GCTGAACGAACGAATGGAGAGTGGTTGCGACGAATTCATCTCCCGCCAAA ACTCGAGACTCGCGGTGGCGTTGGACCGATTGTTTCATCCACGGTAGCCG GCGCAGAGCCAGTTTCACTGTACGTAGTGGATACGGGTGTACATACCCTG GGCATTTTTCCTGGTATTGTTTGGTTGCAAGTAAATACGGGATGATATGC CACAGCTCGATGGTACCGATCCCTTTCGTACTGGTCTCCCGGGGCGCCTA TTGCTGCCTACGACTTGGTTGTTTTCTTCCATCGAGACACTTTTTTGTTC AGCCTGTTTTTCGTGACCACGCGCCTAGACTTCGAAAAAAAGACCTGATG TGAGAACATCATCATCGTCATGATCATCATCATTACCATCTTCATCCTCA TTACTGGACCGAAAACAACTAGCAGGGACCTGCTGTGCGTTTCCGACTTG CGGCTCCCAATCTTTACGCGCCGCCGCCTTCTTAAACGAAACCTAAAACG CCGTCCTCCTCCTGAAAAACGAAAGATGATGACGGAGCTGCGCTTCCAGT GCTTCGAGGTCGAGAAGATGCAGCACGTCCGGCAGGGGCTGCTGAAGGCG AACACGATGCTTTTGGCCCAGGCTGCGTCGGCCCGGCACCGCGTGGAAGA GCTGGCTCGACGGAGCCAGCTGCTGCAGAGGATTACGCGCTACATGTACC ACAAGGCGAGGCGGCACGGCTTTGGACGCGTGCCACGATAGGGCATACCT TATATTACGGGGGTCCATAGTTAACAGGACCAAATATTGTTAGTAAAACT ACCTAAATATATAGGTTTTTTTGTTTTTATTAGGTCTTGCTAACTATAGA CCCCGGTAATAGTGCATTTCTTGCCTTGCAAGGCAAATGCTTTGTATTAG TACATTTTTGCCTTGCAAGACAAATGCCTTATAGTACCCTTGCAAGGCAG ATGCTTTACATTAGTAGTAATTTTTTTGCCTTGCAAGGCGAATGCCTTAT ACGAAGTAGTACCTTCTTGCCTTGCAAGACAGACGCCACATATTAATAGC ACATTTTTGCTTCGCAAGGGAAATGCCTTGTATTACCTTTTTTGCCTTGC AAGGCGAATGTTTCGGTCGCACGGGCTAAGGAACCAACCAATACGGCACG TTTTATTTTTGCAACATAATTTTCGCTAGCAACAAATGTAGCCAATGGGA TTTGCTCGTCGGGTTAAGCCTACAAATGCACATGTCGTGTGCCCTCGGAA GCAGACACAAGTCCGTTCACACTGCGTAATTGTACTGTATTGGCTATATC ATGTGCCTCGTAGGTGGAAACTAATGAACGTGTTGAATTAGTGTAAATTA ATTAAACTGGCGGTACGACCACGGCTCTGCGCTTGACGCTAGTCCTGCGT TGCCCTTACTAGTTTGTAAGTACATGGTATCAATAGTACCCCTAGTGTGC TGTGATGTACTACCTTAATGAATTCGGCGTTGTGTCGTATAGTTCGTGAA TGTGTCACACGGGGGCTGGGTGTCGCAGAGATACAATCGTATCGTGTGCC TCGGAGGCAGAAACTGATTCATCACACTATGTTAAGACGCCAATTGTTCA ACTGGTCGCTTCAACCCAGACATGACCCCCTCAAACAAATTCCCCAGTTT TGGGTGGCATACTACCTAGTATGGGGCTCCTCAAGCAAGCAGTAAGTAGC CTCCGAAAAATTTCAGGTTCCATCCCTTCCGTCTGAAAAAAGTACCACTC TGGTCAGAAATATAAGGAACTTTGGTACCTTAATATGAAGATCAAGCGTT TATTATCGTACGCCTCGAGCGGTATACTCCGAAGCGTGAGGTAGGCGCAG CAAATATTGTGTATGTGTGCTTGTGTAGATATATGCATGATCGTACGAAA GACAAAAAAAAAACTGCGTCTTTGGTTTTCTCTCCTTTCCTTCGCACGAA TTCTGGAGCACTTTTCTTGCTGAGGTCGTCCGGAAGACCCCGAGGTTGGG CCGCTCGACAGAAATATTGGGAAATCAAGCTCGCGTTTTGTCTTTCAATC CTGCGATCAGGGCGTTCTTCGAGCCGTAACCGGCCTAGGGGGGGGAATGT ATATATATGGGCGGGAAGTATACGTATATATATGGCTGTTTTCTGACGGC AAGCAGAAGACCGCAATGGTTGAGTGGTCCGCACACCTACGGGATCAGAC GTTTATCTTCAGGCTGTTCGTCGCCGGTGATGAGGCCGTGACACCTCCCA AGCGGACACCGACCGGCGACCCAGTCGACGATGACGAACCAGATCACCGG ATGGGCGTCAAGACCTGCTTCCGCAAGCCTACCCTATATTGGCCAGCACC TACATCAGCGAAGCATGAATTACAGGTTTTCTCGCGCCTTTTGAGGCGGC TTGCGCAACGCCCCCCCTCCGTCTCTCCCGGTGATGAAAAGCTTCCGTAC CCACCCTTGCCTGCCAACTAACGCTCACATCTCGTAACCCCTTCCGTGCT TCCGCCGAGTCAGTTCCAATCGCAGAGCACACCCCTCAGCGCTTGTGCCA GTGGGGGAGAAGGTGTCCCACAGCGTGGCATCGGTGTGGCCGCGGGTTCG TCGGGAGGAGAAGGCGGGTCGGATTCAGGGGTGGTGGTCCCGGGAGACAG TGCGAGCGGGGTGCTCTACAAGCTGGCGGGTATGTCAGTGGAGGAGCGGC AGCAGATGCTGGACCTGCGTGAAGAGGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11045:372..10000+

>mRNA_M-pyrifera_M_contig11045.2185.1 ID=mRNA_M-pyrifera_M_contig11045.2185.1|Name=mRNA_M-pyrifera_M_contig11045.2185.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1950bp|location=Sequence derived from alignment at M-pyrifera_M_contig11045:372..10000+ (Macrocystis pyrifera P11B4 male)
ATGACGCAGATCAGCGTGGTTCTTACGGCGCGGGACGACCTGAACCAAAA
GAAGAAGCGGCTCGAGAGCGAGATAAGCCAACAATCGCAGGAGCAGAACG
ACATTTACCAGTACCTCAGGAAGAAGCTCAAAGACAACTACGTTGCGATT
GCTGTGTTGGAGACGAAGATGACGCAGATCAGCGTGGTTCTTACGGCGCG
GGACGACCTGAACCAAAAGAAGAAGCGGCTCGAGAGCGAGATAAGCCAAC
AATCGCAGGAGCAGAACGACATTTACCAGTACCTCAGGAAGAAGCTCAAA
GACAACTACGTTGCGATTGCTGTGTTGGAGACGAAGGTTTCGCGAGCTCA
CGATGAGAGGCTGACCCGAGAGAAGGAGCTGATCGCGACCGCTGTGGACC
TCGGGGAAAAACGTGAGAGCGAGAAGGTTTCGCGAGCTCACGATGAGAGG
CTGACCCGAGAGAAGGAGCTGATCGCGACCGCTGTGGACCTCGGGGAAAA
ACGTGAGAGCGAGAAGGTACGCCTCGTGGAGCGGCTAGAAGTCCTGGATG
GAGAGCTGGCCGGAATCGAAGAGTTCCAGGAAAATTCAGCGGCATACGCG
CAAAAGGTACGCCTCGTGGAGCGGCTAGAAGTCCTGGATGGAGAGCTGGC
CGGAATCGAAGAGTTCCAGGAAAATTCAGCGGCATACGCGCAAAAGTTGC
GAGATCTGGAGGCGAAGATTTCGGGTTGCAAAGAAGCTTTCCACGACGAG
CTAATGGCGTTGAGCTCGCAGGTCGACGAAGAATGGGAAAAAGGCCGCCG
GAAGAAGGACGACAGGATGAAGACCGCAAAGAAGTTGCGAGATCTGGAGG
CGAAGATTTCGGGTTGCAAAGAAGCTTTCCACGACGAGCTAATGGCGTTG
AGCTCGCAGGTCGACGAAGAATGGGAAAAAGGCCGCCGGAAGAAGGACGA
CAGGATGAAGACCGCAAAGAAGGTCGCTGCGAAGGCCACGCAGGAAAAGC
TGAGCCCCAAAACCAAGCACAGGATCGAGCAGAACAAAAAGGTCGCTGCG
AAGGCCACGCAGGAAAAGCTGAGCCCCAAAACCAAGCACAGGATCGAGCA
GAACAAAAAGATGATGACGGAGCTGCGCTTCCAGTGCTTCGAGGTCGAGA
AGATGCAGCACGTCCGGCAGGGGCTGCTGAAGGCGAACACGATGCTTTTG
GCCCAGGCTGCGTCGGCCCGGCACCGCGTGGAAGAGCTGGCTCGACGGAG
CCAGCTGCTGCAGAGGATTACGCGCTACATGTACCACAAGGCGAGGCGGC
ACGGCTTTGGACGCATGATGACGGAGCTGCGCTTCCAGTGCTTCGAGGTC
GAGAAGATGCAGCACGTCCGGCAGGGGCTGCTGAAGGCGAACACGATGCT
TTTGGCCCAGGCTGCGTCGGCCCGGCACCGCGTGGAAGAGCTGGCTCGAC
GGAGCCAGCTGCTGCAGAGGATTACGCGCTACATGTACCACAAGGCGAGG
CGGCACGGCTTTGGACGCTTCCAATCGCAGAGCACACCCCTCAGCGCTTG
TGCCAGTGGGGGAGAAGGTGTCCCACAGCGTGGCATCGGTGTGGCCGCGG
GTTCGTCGGGAGGAGAAGGCGGGTCGGATTCAGGGGTGGTGGTCCCGGGA
GACAGTGCGAGCGGGGTGCTCTACAAGCTGGCGGGTATGTCAGTGGAGGA
GCGGCAGCAGATGCTGGACCTGCGTGAAGAGGTATTCCAATCGCAGAGCA
CACCCCTCAGCGCTTGTGCCAGTGGGGGAGAAGGTGTCCCACAGCGTGGC
ATCGGTGTGGCCGCGGGTTCGTCGGGAGGAGAAGGCGGGTCGGATTCAGG
GGTGGTGGTCCCGGGAGACAGTGCGAGCGGGGTGCTCTACAAGCTGGCGG
GTATGTCAGTGGAGGAGCGGCAGCAGATGCTGGACCTGCGTGAAGAGGTA
back to top