mRNA_M-pyrifera_M_contig110406.2180.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110406.2180.1
Unique NamemRNA_M-pyrifera_M_contig110406.2180.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110406.2180.1 vs. uniprot
Match: F0YDA6_AURAN (PX domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA6_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 4.260e-16
Identity = 74/216 (34.26%), Postives = 104/216 (48.15%), Query Frame = 1 
Query:    1 DGSEVGGSAGTTSVF-SSPAHITLYAGGQKGEVVVEPQSM-QFFYRCFVGGERVPEDNE-----RDAPLDEDRS---LEVSVPRFVQCLD-----SSGSEVIFF--EIRVRRKADMRENTVHRRFRDFFLLAEAIKSAYVGYPLHSAIPDPPPRAAKWFQDHKASAFLEERRAALEAFLQALERVPRVRSNNDFLSHVGVQGCVRETSVVFAQGPL 597
            D  E+ GS GT+SVF  S   I    GG +G + ++  +   F Y C   G  VPE        R AP    RS   L V+  R +  +      S  + ++++  E    +  ++    VHRRFRDF  L EAI  A  G+ + +++P  P +  K FQDH  +AFLE RR  L+ ++  L  VP V +       VGV   VRE SVVF +  L
Sbjct:   41 DHEELEGSLGTSSVFHGSTTTIPFACGGCRGAIHIQRSAFFGFSYACSADGVSVPEATSATADPRRAPGHAGRSGPALRVNSCRVLAHVTTRDHASPSAPIVWYLIETHASKGDEVATTRVHRRFRDFADLDEAITGALAGHHVRNSVPRLPLKKLKLFQDHNDAAFLEARRRDLDGYVAKLVHVPHVWATPPAAPFVGVANNVREYSVVFPERTL 256
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BLAST of mRNA_M-pyrifera_M_contig110406.2180.1 vs. uniprot
Match: A0A835YSM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.460e-11
Identity = 59/206 (28.64%), Postives = 102/206 (49.51%), Query Frame = 1 
Query:    1 DGSEVGGSAGTTSVFS-----SPAHITLYAGGQKGEVVVEPQS-MQFFYRCFVGGERVPEDNERDAPLDEDRSLEVSVPRFVQCLDSSGSE---VIFFEIRVRRKADMRENTVHRRFRDFFLLAEAIKSAYVGYPLHSAIPDPPPRAAKWFQDHKASAFLEERRAALEAFLQALERVPRVRSNNDFLSHVGVQGCVRETSVVFAQG 591
            D +E+  SAGT++  +     +     + A G+ G++ +     + + YRC V G  + E   +    +++   +V +P  VQ     G +   V ++ +RVRR  D     VHRR+ DF +L +       G+ L  ++P  P ++     D   +AF+E RRA L+A+L+ L RVP V   +   + +G+ G +RE S V + G
Sbjct:  128 DYAELKDSAGTSNCLNLLFGAAKIAFEVKATGEWGKLEIRRSGILGYQYRCEVDGRAIRETTSK--VNNQEHEFDVRIPSSVQACAYKGGDQPNVTWYLLRVRRLRDGACTEVHRRYTDFEMLHQQCDGMMKGHHLSDSLPPLPCKSP--LLDRSDAAFIESRRAELQAYLRTLLRVPHVGGLDTTRAFLGLVGDLRERSFVVSGG 329
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BLAST of mRNA_M-pyrifera_M_contig110406.2180.1 vs. uniprot
Match: K8ZBB6_NANGC (Px domain containing protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBB6_NANGC)

HSP 1 Score: 60.8 bits (146), Expect = 1.350e-7
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  286 KADMRENTVHRRFRDFFLLAEAIKSAYVGYPLHSAIPDPPPRAAKWFQDHKASAFLEERRAALEAFLQALERVPRVRSNNDFLSHV 543
            +A  +E     RFRDF  L   I+S + G+ L S++P  PP+  K    H + +FLEERRAAL+A++Q L+  P V+ N D+ + V
Sbjct:  214 RAGPKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDAYMQRLQNFPYVQRNPDWQAFV 299
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BLAST of mRNA_M-pyrifera_M_contig110406.2180.1 vs. uniprot
Match: A0A4D9CXU4_9STRA (PX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXU4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.450e-7
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  286 KADMRENTVHRRFRDFFLLAEAIKSAYVGYPLHSAIPDPPPRAAKWFQDHKASAFLEERRAALEAFLQALERVPRVRSNNDFLSHV-GVQGCVRE 567
            +A  +E     RFRDF  L   I+S + G+ L S++P  PP+  K    H + +FLEERRAAL+ ++Q L+  P V+ N D+ + + G   C +E
Sbjct:  180 RAGSKEKEHRFRFRDFDKLDVKIRSYFWGHHLASSLPRLPPKYLKALTAHTSPSFLEERRAALDEYMQRLQNFPYVQRNPDWQAFILGEPECSKE 274
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BLAST of mRNA_M-pyrifera_M_contig110406.2180.1 vs. uniprot
Match: UPI00125D4F92 (sorting nexin 2B-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D4F92)

HSP 1 Score: 52.4 bits (124), Expect = 9.660e-5
Identity = 51/172 (29.65%), Postives = 77/172 (44.77%), Query Frame = 1 
Query:   97 VVEPQSM-QFFYRCFVGGERVPEDNERD-----------APLDEDRSLEVSVPRFVQCLDSS----GSEVIFFEIRVRRKADMRENT---VHRRFRDFFLLAEAIKSAYVGYPLHSAIPDPPPRAAKWFQDHKASAFLEERRAALEAFLQALERVPRVRSNNDFLSHVGVQG 555
            ++EP S     +R F     +PE N  D            P+ E   + VS P+  Q L +S    GS  + + I  R        T   + RRFRD   L++ +  AY G+     IP  P ++    Q  +   F+E+RRAALE +LQ L   P +R++ +    + VQG
Sbjct:   77 ILEPPSYADAIFRSFDADHTLPEVNGHDQSGASPSSSSSTPMSEYLHITVSDPQKEQELTNSLVPGGSTYVTYLITTRTNLPHFSGTEFSIRRRFRDVVTLSDRLSEAYRGF----FIPVRPDKSVVESQVMQKHEFVEQRRAALEKYLQRLAAHPVIRTSEELRLFLEVQG 244
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110406.2180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
F0YDA6_AURAN4.260e-1634.26PX domain-containing protein n=1 Tax=Aureococcus a... [more]
A0A835YSM5_9STRA7.460e-1128.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8ZBB6_NANGC1.350e-740.70Px domain containing protein n=3 Tax=Nannochlorops... [more]
A0A4D9CXU4_9STRA3.450e-737.89PX domain-containing protein n=1 Tax=Nannochlorops... [more]
UPI00125D4F929.660e-529.65sorting nexin 2B-like n=1 Tax=Ipomoea triloba TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110406contigM-pyrifera_M_contig110406:2..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue5.6e-16
Seed eggNOG ortholog44056.XP_009038266.1
KEGG koko:K06236,ko:K19069
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC1.1.99.18
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko04516
Exons1
Model size597
Cds size597
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.2598622-CDS-M-pyrifera_M_contig110406:1..5981622815615.2598622-CDS-M-pyrifera_M_contig110406:1..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110406 2..598 -
1692277488.523629-CDS-M-pyrifera_M_contig110406:1..5981692277488.523629-CDS-M-pyrifera_M_contig110406:1..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110406 2..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110406.2180.1prot_M-pyrifera_M_contig110406.2180.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110406 2..598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110406.2180.1

>prot_M-pyrifera_M_contig110406.2180.1 ID=prot_M-pyrifera_M_contig110406.2180.1|Name=mRNA_M-pyrifera_M_contig110406.2180.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=199bp
DGSEVGGSAGTTSVFSSPAHITLYAGGQKGEVVVEPQSMQFFYRCFVGGE
RVPEDNERDAPLDEDRSLEVSVPRFVQCLDSSGSEVIFFEIRVRRKADMR
ENTVHRRFRDFFLLAEAIKSAYVGYPLHSAIPDPPPRAAKWFQDHKASAF
LEERRAALEAFLQALERVPRVRSNNDFLSHVGVQGCVRETSVVFAQGPL
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mRNA from alignment at M-pyrifera_M_contig110406:2..598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110406.2180.1 ID=mRNA_M-pyrifera_M_contig110406.2180.1|Name=mRNA_M-pyrifera_M_contig110406.2180.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig110406:2..598- (Macrocystis pyrifera P11B4 male)
GACGGGTCTGAGGTGGGGGGAAGTGCGGGAACGACGTCGGTGTTCTCCTC
TCCGGCCCACATCACCTTGTACGCGGGCGGGCAGAAGGGCGAGGTGGTGG
TGGAGCCACAGAGCATGCAGTTCTTCTACCGCTGCTTCGTGGGCGGGGAG
CGGGTGCCGGAAGACAACGAGCGCGACGCGCCTCTGGACGAAGACCGCAG
TTTGGAGGTTTCCGTGCCCCGGTTCGTGCAGTGCCTGGACAGCAGCGGGT
CGGAGGTGATTTTCTTCGAAATTCGCGTGCGCCGCAAAGCCGACATGCGC
GAGAACACGGTGCATCGGCGGTTCCGGGATTTCTTCCTCCTCGCCGAGGC
CATCAAGTCCGCCTACGTGGGGTATCCGTTACACTCTGCCATCCCCGATC
CCCCTCCGCGCGCTGCCAAGTGGTTCCAGGACCACAAGGCCTCGGCGTTC
CTCGAAGAACGAAGAGCGGCGCTCGAAGCCTTCCTCCAGGCCCTCGAGAG
GGTGCCTCGCGTCAGAAGCAACAACGACTTCCTCTCCCACGTCGGCGTGC
AGGGCTGTGTCAGGGAAACCAGCGTCGTCTTCGCCCAGGGCCCGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110406:2..598-

>mRNA_M-pyrifera_M_contig110406.2180.1 ID=mRNA_M-pyrifera_M_contig110406.2180.1|Name=mRNA_M-pyrifera_M_contig110406.2180.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1194bp|location=Sequence derived from alignment at M-pyrifera_M_contig110406:2..598- (Macrocystis pyrifera P11B4 male)
GACGGGTCTGAGGTGGGGGGAAGTGCGGGAACGACGTCGGTGTTCTCCTC
TCCGGCCCACATCACCTTGTACGCGGGCGGGCAGAAGGGCGAGGTGGTGG
TGGAGCCACAGAGCATGCAGTTCTTCTACCGCTGCTTCGTGGGCGGGGAG
CGGGTGCCGGAAGACAACGAGCGCGACGCGCCTCTGGACGAAGACCGCAG
TTTGGAGGTTTCCGTGCCCCGGTTCGTGCAGTGCCTGGACAGCAGCGGGT
CGGAGGTGATTTTCTTCGAAATTCGCGTGCGCCGCAAAGCCGACATGCGC
GAGAACACGGTGCATCGGCGGTTCCGGGATTTCTTCCTCCTCGCCGAGGC
CATCAAGTCCGCCTACGTGGGGTATCCGTTACACTCTGCCATCCCCGATC
CCCCTCCGCGCGCTGCCAAGTGGTTCCAGGACCACAAGGCCTCGGCGTTC
CTCGAAGAACGAAGAGCGGCGCTCGAAGCCTTCCTCCAGGCCCTCGAGAG
GGTGCCTCGCGTCAGAAGCAACAACGACTTCCTCTCCCACGTCGGCGTGC
AGGGCTGTGTCAGGGAAACCAGCGTCGTCTTCGCCCAGGGCCCGCTCGAC
GGGTCTGAGGTGGGGGGAAGTGCGGGAACGACGTCGGTGTTCTCCTCTCC
GGCCCACATCACCTTGTACGCGGGCGGGCAGAAGGGCGAGGTGGTGGTGG
AGCCACAGAGCATGCAGTTCTTCTACCGCTGCTTCGTGGGCGGGGAGCGG
GTGCCGGAAGACAACGAGCGCGACGCGCCTCTGGACGAAGACCGCAGTTT
GGAGGTTTCCGTGCCCCGGTTCGTGCAGTGCCTGGACAGCAGCGGGTCGG
AGGTGATTTTCTTCGAAATTCGCGTGCGCCGCAAAGCCGACATGCGCGAG
AACACGGTGCATCGGCGGTTCCGGGATTTCTTCCTCCTCGCCGAGGCCAT
CAAGTCCGCCTACGTGGGGTATCCGTTACACTCTGCCATCCCCGATCCCC
CTCCGCGCGCTGCCAAGTGGTTCCAGGACCACAAGGCCTCGGCGTTCCTC
GAAGAACGAAGAGCGGCGCTCGAAGCCTTCCTCCAGGCCCTCGAGAGGGT
GCCTCGCGTCAGAAGCAACAACGACTTCCTCTCCCACGTCGGCGTGCAGG
GCTGTGTCAGGGAAACCAGCGTCGTCTTCGCCCAGGGCCCGCTC
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