mRNA_M-pyrifera_M_contig110405.2179.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110405.2179.1
Unique NamemRNA_M-pyrifera_M_contig110405.2179.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517W719_9PLAN (RNA polymerase sigma factor n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517W719_9PLAN)

HSP 1 Score: 277 bits (709), Expect = 7.910e-94
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 1
Query:    1 MPQSKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            M QSKT+SLFTALLSKDR+RIFSFIR+LIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYT RNHHRSLRHDRHYFDQDL+ETMSR REQHLANYN RIDYLHECLSSLT+SDQKLLQDAV+EKQS+ EIAK TEKS
Sbjct:    1 MSQSKTSSLFTALLSKDRIRIFSFIRTLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTVRNHHRSLRHDRHYFDQDLIETMSRNREQHLANYNSRIDYLHECLSSLTASDQKLLQDAVFEKQSLSEIAKATEKS 146          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A350KI19_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KI19_9PLAN)

HSP 1 Score: 241 bits (616), Expect = 1.440e-79
Identity = 115/143 (80.42%), Postives = 129/143 (90.21%), Query Frame = 1
Query:   10 SKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            S   ++FT+LL KDR+RIF +IR+L+PH SDAEDVYQ V LTLWKKFEEFDRDRDFFPWACGIAFYTARNH+R +RHDR YFDQDL+ETMSRKREQHL+NYN RIDYLHECLSSLTSSDQKLL+DAV+EK+SI EIA  TEKS
Sbjct:   10 SSPRAIFTSLLDKDRIRIFQYIRTLVPHYSDAEDVYQHVSLTLWKKFEEFDRDRDFFPWACGIAFYTARNHYRGVRHDRLYFDQDLLETMSRKREQHLSNYNSRIDYLHECLSSLTSSDQKLLRDAVFEKRSIAEIAIKTEKS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517Q1L2_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q1L2_9PLAN)

HSP 1 Score: 228 bits (582), Expect = 2.160e-74
Identity = 108/152 (71.05%), Postives = 134/152 (88.16%), Query Frame = 1
Query:    1 MPQSKTN------SLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            M QSK++      S FT+LLSKDR+R+FSFIRS++ + SDAEDVYQRVCLTLW KF+EFD+ RDFFPWACG+A YT RNHHRSLRHDRHYFDQ+L+ET+S++REQHL+NYN RI++LHECL +L SSDQ+LLQDAV+EKQ++ EIAKTT++S
Sbjct:    1 MSQSKSSVGPSLRSHFTSLLSKDRIRLFSFIRSMVLNVSDAEDVYQRVCLTLWNKFDEFDQKRDFFPWACGVASYTVRNHHRSLRHDRHYFDQELIETISQQREQHLSNYNIRIEFLHECLRALNSSDQQLLQDAVFEKQAVTEIAKTTKRS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VDN1_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517VDN1_9PLAN)

HSP 1 Score: 224 bits (572), Expect = 2.660e-73
Identity = 104/135 (77.04%), Postives = 122/135 (90.37%), Query Frame = 1
Query:   25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTT 429
            ++++LL ++R+RIF++IR+L+PH SDAEDVYQ VCLTLWKKF+EFDRDRDFFPW CGIAFYTARNH+R +RHDRH+F+QDLMETMSRKREQHL+NYN RIDYL ECLSSLTSS QKLL+D V EK SI EIA TT
Sbjct:   15 VYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFKEFDRDRDFFPWVCGIAFYTARNHYRGVRHDRHHFNQDLMETMSRKREQHLSNYNSRIDYLRECLSSLTSSVQKLLRDPVIEKHSISEIAVTT 149          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A518I6Y0_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Y0_9PLAN)

HSP 1 Score: 204 bits (519), Expect = 8.940e-65
Identity = 94/139 (67.63%), Postives = 120/139 (86.33%), Query Frame = 1
Query:   22 SLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            S FT+LLSK+R+RIF +I++L+PH+SDAEDVYQRVCLTLW KF+EFD++RDFF WACGIAFYT  NH RS++HDRH F+Q+L+ET+S+KREQHL+NYN RI+ L ECL+ L S+DQ+LLQ+A  + Q I EIAKT +KS
Sbjct:   14 SHFTSLLSKERLRIFGYIQALVPHSSDAEDVYQRVCLTLWNKFDEFDQERDFFFWACGIAFYTVCNHRRSIKHDRHCFNQELIETISQKREQHLSNYNVRIELLRECLNDLDSADQQLLQNATLKNQKIKEIAKTAQKS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A2D5GZ99_9PLAN (RNA polymerase subunit sigma-70 n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZ99_9PLAN)

HSP 1 Score: 199 bits (506), Expect = 5.390e-63
Identity = 88/138 (63.77%), Postives = 119/138 (86.23%), Query Frame = 1
Query:   25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            +FT+LLSKDR+RIF +IR+L+P+NSDAEDVYQ VCLTLW KF+EFD+DRDFF WACG+AF+T  N+ RS+  DRH+F+Q+L+ETMS +RE+HL N++ R+D+L +C+ +L SSDQ+LL++AVYE QS+ EIAKT  K+
Sbjct:    1 MFTSLLSKDRLRIFGYIRTLVPNNSDAEDVYQHVCLTLWNKFDEFDQDRDFFSWACGVAFFTVCNYRRSIGRDRHFFNQELIETMSHEREEHLNNHDIRLDFLQDCMQNLNSSDQQLLKNAVYENQSVKEIAKTAGKT 138          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517RAB5_9PLAN (RNA polymerase sigma factor RpoE n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAB5_9PLAN)

HSP 1 Score: 195 bits (495), Expect = 3.990e-61
Identity = 85/141 (60.28%), Postives = 116/141 (82.27%), Query Frame = 1
Query:   16 TNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            +  LFT+LLSK+R+RIF +IR+L+PHNSDAED+YQRVCLTLWKKF+EFD++RDFF WACGIAFYT  N+ RS++HDRH++ Q+L+ETMS+KREQ L NYN R++ LH+CL+ L   D++LLQ+   + + + E+AK   +S
Sbjct:   12 SQGLFTSLLSKERLRIFGYIRALVPHNSDAEDIYQRVCLTLWKKFDEFDQERDFFFWACGIAFYTVCNYRRSIQHDRHFYSQELIETMSQKREQQLTNYNLRLELLHDCLNELPPEDRQLLQNVTLKNEPLKEMAKAANRS 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VDM5_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDM5_9PLAN)

HSP 1 Score: 191 bits (485), Expect = 1.320e-59
Identity = 86/138 (62.32%), Postives = 114/138 (82.61%), Query Frame = 1
Query:   25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            +FT+L+ ++R RIF++IR+L+PH SDAEDVYQ VCLTLWKKF EFD+ RDFF WACGI FYT  NH RS R+DRHYF Q+L+ETM+++REQ L+ YN RI+ LH+CL  L S+DQ+LL+ ++ EKQSI +IAKT +++
Sbjct:   15 VFTSLIDQERFRIFNYIRTLVPHYSDAEDVYQLVCLTLWKKFAEFDQKRDFFSWACGITFYTVCNHRRSRRNDRHYFSQELIETMAQQREQDLSKYNIRIELLHDCLDGLNSTDQQLLKKSILEKQSIKDIAKTADRA 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A2D5H4P6_9PLAN (RNA polymerase subunit sigma-70 n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H4P6_9PLAN)

HSP 1 Score: 189 bits (480), Expect = 6.920e-59
Identity = 82/143 (57.34%), Postives = 115/143 (80.42%), Query Frame = 1
Query:   10 SKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            + +  ++++LL ++R+RIF++IR+L+PH SDAEDVYQ VCLTLWKKF+EFD++RDFF WACGI FYT  NH RS+R DRHYF Q+L++TM+++RE  L+ YN RI+YL +C+  L  +DQ+LLQ  + EKQSI E AKT +++
Sbjct:   10 ASSRKVYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFDEFDQERDFFSWACGITFYTVCNHRRSMRKDRHYFSQELIDTMAQQREHDLSKYNTRIEYLRDCMKCLNPTDQQLLQKTILEKQSIKEFAKTADRA 152          
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VT11_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT11_9PLAN)

HSP 1 Score: 182 bits (461), Expect = 6.060e-56
Identity = 82/138 (59.42%), Postives = 110/138 (79.71%), Query Frame = 1
Query:   25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
            +FT LL+ +R+RIF +IR+L+PHNSDAEDVYQ VCLTLW KF EFD++RDFF WACGIAF+T  N  RS++ DRH+F Q+L+ETMS +R +HL+N+N R++ L +C S L+S+DQ+LL  A +EKQSI E A+   K+
Sbjct:   15 VFTELLTTERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSIQRDRHFFSQELIETMSAERMRHLSNHNTRLELLQDCFSGLSSADQELLLQATFEKQSIKEFAEKAGKT 152          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517W719_9PLAN7.910e-9491.10RNA polymerase sigma factor n=8 Tax=Gimesia TaxID=... [more]
A0A350KI19_9PLAN1.440e-7980.42RNA polymerase subunit sigma-70 n=1 Tax=Planctomyc... [more]
A0A517Q1L2_9PLAN2.160e-7471.05RNA polymerase sigma factor n=2 Tax=Gimesia panare... [more]
A0A517VDN1_9PLAN2.660e-7377.04RNA polymerase sigma factor n=2 Tax=Gimesia TaxID=... [more]
A0A518I6Y0_9PLAN8.940e-6567.63RNA polymerase sigma factor n=1 Tax=Gimesia fumaro... [more]
A0A2D5GZ99_9PLAN5.390e-6363.77RNA polymerase subunit sigma-70 n=8 Tax=Planctomyc... [more]
A0A517RAB5_9PLAN3.990e-6160.28RNA polymerase sigma factor RpoE n=1 Tax=Gimesia a... [more]
A0A517VDM5_9PLAN1.320e-5962.32RNA polymerase sigma factor n=1 Tax=Gimesia algae ... [more]
A0A2D5H4P6_9PLAN6.920e-5957.34RNA polymerase subunit sigma-70 n=7 Tax=Planctomyc... [more]
A0A517VT11_9PLAN6.060e-5659.42RNA polymerase sigma factor n=2 Tax=Gimesia aquari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110405contigM-pyrifera_M_contig110405:3..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score201.1
Seed ortholog evalue3.7e-49
Seed eggNOG ortholog344747.PM8797T_20938
Preferred namerfaY
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog
EggNOG OGs2J3TV@203682,COG1595@1,COG1595@2
COG Functional cat.K
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size438
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.2229443-CDS-M-pyrifera_M_contig110405:2..4401622815615.2229443-CDS-M-pyrifera_M_contig110405:2..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110405 3..440 -
1692277488.5117338-CDS-M-pyrifera_M_contig110405:2..4401692277488.5117338-CDS-M-pyrifera_M_contig110405:2..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110405 3..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110405.2179.1prot_M-pyrifera_M_contig110405.2179.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110405 3..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110405.2179.1

>prot_M-pyrifera_M_contig110405.2179.1 ID=prot_M-pyrifera_M_contig110405.2179.1|Name=mRNA_M-pyrifera_M_contig110405.2179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MPQSKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKF
EEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQH
LANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS
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mRNA from alignment at M-pyrifera_M_contig110405:3..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110405.2179.1 ID=mRNA_M-pyrifera_M_contig110405.2179.1|Name=mRNA_M-pyrifera_M_contig110405.2179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig110405:3..440- (Macrocystis pyrifera P11B4 male)
ATGCCGCAATCAAAAACGAACAGCCTGTTTACAGCACTGTTAAGCAAAGA TCGAATGCGGATTTTCAGTTTTATTCGGTCATTGATTCCTCATAATTCTG ATGCTGAAGATGTTTATCAACGCGTCTGCCTGACTCTCTGGAAGAAGTTT GAAGAGTTCGATCGGGATCGAGACTTCTTTCCCTGGGCTTGTGGGATTGC ATTTTATACCGCACGGAATCACCATAGAAGCCTGCGCCACGATCGACATT ATTTCGATCAGGACCTGATGGAAACCATGTCTCGAAAACGGGAGCAGCAT TTAGCTAACTACAACTGTCGGATCGATTATCTCCATGAATGTTTAAGCTC CCTGACCTCGTCCGATCAGAAGTTGCTGCAGGACGCGGTTTATGAAAAAC AGTCCATCCCGGAGATCGCCAAAACAACTGAGAAATCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110405:3..440-

>mRNA_M-pyrifera_M_contig110405.2179.1 ID=mRNA_M-pyrifera_M_contig110405.2179.1|Name=mRNA_M-pyrifera_M_contig110405.2179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig110405:3..440- (Macrocystis pyrifera P11B4 male)
ATGCCGCAATCAAAAACGAACAGCCTGTTTACAGCACTGTTAAGCAAAGA
TCGAATGCGGATTTTCAGTTTTATTCGGTCATTGATTCCTCATAATTCTG
ATGCTGAAGATGTTTATCAACGCGTCTGCCTGACTCTCTGGAAGAAGTTT
GAAGAGTTCGATCGGGATCGAGACTTCTTTCCCTGGGCTTGTGGGATTGC
ATTTTATACCGCACGGAATCACCATAGAAGCCTGCGCCACGATCGACATT
ATTTCGATCAGGACCTGATGGAAACCATGTCTCGAAAACGGGAGCAGCAT
TTAGCTAACTACAACTGTCGGATCGATTATCTCCATGAATGTTTAAGCTC
CCTGACCTCGTCCGATCAGAAGTTGCTGCAGGACGCGGTTTATGAAAAAC
AGTCCATCCCGGAGATCGCCAAAACAACTGAGAAATCAATGCCGCAATCA
AAAACGAACAGCCTGTTTACAGCACTGTTAAGCAAAGATCGAATGCGGAT
TTTCAGTTTTATTCGGTCATTGATTCCTCATAATTCTGATGCTGAAGATG
TTTATCAACGCGTCTGCCTGACTCTCTGGAAGAAGTTTGAAGAGTTCGAT
CGGGATCGAGACTTCTTTCCCTGGGCTTGTGGGATTGCATTTTATACCGC
ACGGAATCACCATAGAAGCCTGCGCCACGATCGACATTATTTCGATCAGG
ACCTGATGGAAACCATGTCTCGAAAACGGGAGCAGCATTTAGCTAACTAC
AACTGTCGGATCGATTATCTCCATGAATGTTTAAGCTCCCTGACCTCGTC
CGATCAGAAGTTGCTGCAGGACGCGGTTTATGAAAAACAGTCCATCCCGG
AGATCGCCAAAACAACTGAGAAATCA
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