mRNA_M-pyrifera_M_contig110405.2179.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517W719_9PLAN (RNA polymerase sigma factor n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517W719_9PLAN) HSP 1 Score: 277 bits (709), Expect = 7.910e-94 Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 1
Query: 1 MPQSKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
M QSKT+SLFTALLSKDR+RIFSFIR+LIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYT RNHHRSLRHDRHYFDQDL+ETMSR REQHLANYN RIDYLHECLSSLT+SDQKLLQDAV+EKQS+ EIAK TEKS
Sbjct: 1 MSQSKTSSLFTALLSKDRIRIFSFIRTLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTVRNHHRSLRHDRHYFDQDLIETMSRNREQHLANYNSRIDYLHECLSSLTASDQKLLQDAVFEKQSLSEIAKATEKS 146
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A350KI19_9PLAN (RNA polymerase subunit sigma-70 n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KI19_9PLAN) HSP 1 Score: 241 bits (616), Expect = 1.440e-79 Identity = 115/143 (80.42%), Postives = 129/143 (90.21%), Query Frame = 1
Query: 10 SKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
S ++FT+LL KDR+RIF +IR+L+PH SDAEDVYQ V LTLWKKFEEFDRDRDFFPWACGIAFYTARNH+R +RHDR YFDQDL+ETMSRKREQHL+NYN RIDYLHECLSSLTSSDQKLL+DAV+EK+SI EIA TEKS
Sbjct: 10 SSPRAIFTSLLDKDRIRIFQYIRTLVPHYSDAEDVYQHVSLTLWKKFEEFDRDRDFFPWACGIAFYTARNHYRGVRHDRLYFDQDLLETMSRKREQHLSNYNSRIDYLHECLSSLTSSDQKLLRDAVFEKRSIAEIAIKTEKS 152
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517Q1L2_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q1L2_9PLAN) HSP 1 Score: 228 bits (582), Expect = 2.160e-74 Identity = 108/152 (71.05%), Postives = 134/152 (88.16%), Query Frame = 1
Query: 1 MPQSKTN------SLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
M QSK++ S FT+LLSKDR+R+FSFIRS++ + SDAEDVYQRVCLTLW KF+EFD+ RDFFPWACG+A YT RNHHRSLRHDRHYFDQ+L+ET+S++REQHL+NYN RI++LHECL +L SSDQ+LLQDAV+EKQ++ EIAKTT++S
Sbjct: 1 MSQSKSSVGPSLRSHFTSLLSKDRIRLFSFIRSMVLNVSDAEDVYQRVCLTLWNKFDEFDQKRDFFPWACGVASYTVRNHHRSLRHDRHYFDQELIETISQQREQHLSNYNIRIEFLHECLRALNSSDQQLLQDAVFEKQAVTEIAKTTKRS 152
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VDN1_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517VDN1_9PLAN) HSP 1 Score: 224 bits (572), Expect = 2.660e-73 Identity = 104/135 (77.04%), Postives = 122/135 (90.37%), Query Frame = 1
Query: 25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTT 429
++++LL ++R+RIF++IR+L+PH SDAEDVYQ VCLTLWKKF+EFDRDRDFFPW CGIAFYTARNH+R +RHDRH+F+QDLMETMSRKREQHL+NYN RIDYL ECLSSLTSS QKLL+D V EK SI EIA TT
Sbjct: 15 VYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFKEFDRDRDFFPWVCGIAFYTARNHYRGVRHDRHHFNQDLMETMSRKREQHLSNYNSRIDYLRECLSSLTSSVQKLLRDPVIEKHSISEIAVTT 149
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A518I6Y0_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Y0_9PLAN) HSP 1 Score: 204 bits (519), Expect = 8.940e-65 Identity = 94/139 (67.63%), Postives = 120/139 (86.33%), Query Frame = 1
Query: 22 SLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
S FT+LLSK+R+RIF +I++L+PH+SDAEDVYQRVCLTLW KF+EFD++RDFF WACGIAFYT NH RS++HDRH F+Q+L+ET+S+KREQHL+NYN RI+ L ECL+ L S+DQ+LLQ+A + Q I EIAKT +KS
Sbjct: 14 SHFTSLLSKERLRIFGYIQALVPHSSDAEDVYQRVCLTLWNKFDEFDQERDFFFWACGIAFYTVCNHRRSIKHDRHCFNQELIETISQKREQHLSNYNVRIELLRECLNDLDSADQQLLQNATLKNQKIKEIAKTAQKS 152
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A2D5GZ99_9PLAN (RNA polymerase subunit sigma-70 n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GZ99_9PLAN) HSP 1 Score: 199 bits (506), Expect = 5.390e-63 Identity = 88/138 (63.77%), Postives = 119/138 (86.23%), Query Frame = 1
Query: 25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
+FT+LLSKDR+RIF +IR+L+P+NSDAEDVYQ VCLTLW KF+EFD+DRDFF WACG+AF+T N+ RS+ DRH+F+Q+L+ETMS +RE+HL N++ R+D+L +C+ +L SSDQ+LL++AVYE QS+ EIAKT K+
Sbjct: 1 MFTSLLSKDRLRIFGYIRTLVPNNSDAEDVYQHVCLTLWNKFDEFDQDRDFFSWACGVAFFTVCNYRRSIGRDRHFFNQELIETMSHEREEHLNNHDIRLDFLQDCMQNLNSSDQQLLKNAVYENQSVKEIAKTAGKT 138
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517RAB5_9PLAN (RNA polymerase sigma factor RpoE n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAB5_9PLAN) HSP 1 Score: 195 bits (495), Expect = 3.990e-61 Identity = 85/141 (60.28%), Postives = 116/141 (82.27%), Query Frame = 1
Query: 16 TNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
+ LFT+LLSK+R+RIF +IR+L+PHNSDAED+YQRVCLTLWKKF+EFD++RDFF WACGIAFYT N+ RS++HDRH++ Q+L+ETMS+KREQ L NYN R++ LH+CL+ L D++LLQ+ + + + E+AK +S
Sbjct: 12 SQGLFTSLLSKERLRIFGYIRALVPHNSDAEDIYQRVCLTLWKKFDEFDQERDFFFWACGIAFYTVCNYRRSIQHDRHFYSQELIETMSQKREQQLTNYNLRLELLHDCLNELPPEDRQLLQNVTLKNEPLKEMAKAANRS 152
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VDM5_9PLAN (RNA polymerase sigma factor n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VDM5_9PLAN) HSP 1 Score: 191 bits (485), Expect = 1.320e-59 Identity = 86/138 (62.32%), Postives = 114/138 (82.61%), Query Frame = 1
Query: 25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
+FT+L+ ++R RIF++IR+L+PH SDAEDVYQ VCLTLWKKF EFD+ RDFF WACGI FYT NH RS R+DRHYF Q+L+ETM+++REQ L+ YN RI+ LH+CL L S+DQ+LL+ ++ EKQSI +IAKT +++
Sbjct: 15 VFTSLIDQERFRIFNYIRTLVPHYSDAEDVYQLVCLTLWKKFAEFDQKRDFFSWACGITFYTVCNHRRSRRNDRHYFSQELIETMAQQREQDLSKYNIRIELLHDCLDGLNSTDQQLLKKSILEKQSIKDIAKTADRA 152
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A2D5H4P6_9PLAN (RNA polymerase subunit sigma-70 n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H4P6_9PLAN) HSP 1 Score: 189 bits (480), Expect = 6.920e-59 Identity = 82/143 (57.34%), Postives = 115/143 (80.42%), Query Frame = 1
Query: 10 SKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
+ + ++++LL ++R+RIF++IR+L+PH SDAEDVYQ VCLTLWKKF+EFD++RDFF WACGI FYT NH RS+R DRHYF Q+L++TM+++RE L+ YN RI+YL +C+ L +DQ+LLQ + EKQSI E AKT +++
Sbjct: 10 ASSRKVYSSLLDQERLRIFNYIRTLVPHYSDAEDVYQHVCLTLWKKFDEFDQERDFFSWACGITFYTVCNHRRSMRKDRHYFSQELIDTMAQQREHDLSKYNTRIEYLRDCMKCLNPTDQQLLQKTILEKQSIKEFAKTADRA 152
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Match: A0A517VT11_9PLAN (RNA polymerase sigma factor n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VT11_9PLAN) HSP 1 Score: 182 bits (461), Expect = 6.060e-56 Identity = 82/138 (59.42%), Postives = 110/138 (79.71%), Query Frame = 1
Query: 25 LFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFEEFDRDRDFFPWACGIAFYTARNHHRSLRHDRHYFDQDLMETMSRKREQHLANYNCRIDYLHECLSSLTSSDQKLLQDAVYEKQSIPEIAKTTEKS 438
+FT LL+ +R+RIF +IR+L+PHNSDAEDVYQ VCLTLW KF EFD++RDFF WACGIAF+T N RS++ DRH+F Q+L+ETMS +R +HL+N+N R++ L +C S L+S+DQ+LL A +EKQSI E A+ K+
Sbjct: 15 VFTELLTTERLRIFGYIRTLVPHNSDAEDVYQHVCLTLWNKFSEFDQERDFFSWACGIAFFTVCNFRRSIQRDRHFFSQELIETMSAERMRHLSNHNTRLELLQDCFSGLSSADQELLLQATFEKQSIKEFAEKAGKT 152 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110405.2179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig110405.2179.1 >prot_M-pyrifera_M_contig110405.2179.1 ID=prot_M-pyrifera_M_contig110405.2179.1|Name=mRNA_M-pyrifera_M_contig110405.2179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp MPQSKTNSLFTALLSKDRMRIFSFIRSLIPHNSDAEDVYQRVCLTLWKKFback to top mRNA from alignment at M-pyrifera_M_contig110405:3..440- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig110405.2179.1 ID=mRNA_M-pyrifera_M_contig110405.2179.1|Name=mRNA_M-pyrifera_M_contig110405.2179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig110405:3..440- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig110405:3..440- >mRNA_M-pyrifera_M_contig110405.2179.1 ID=mRNA_M-pyrifera_M_contig110405.2179.1|Name=mRNA_M-pyrifera_M_contig110405.2179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig110405:3..440- (Macrocystis pyrifera P11B4 male)back to top |