mRNA_M-pyrifera_M_contig110356.2166.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110356.2166.1
Unique NamemRNA_M-pyrifera_M_contig110356.2166.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: A0A060NIZ6_9BURK (Fe2OG dioxygenase domain-containing protein n=2 Tax=Serpentinimonas TaxID=2490452 RepID=A0A060NIZ6_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 3.140e-7
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 MGRAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            M R G RVAT+ +YL  P+ GGAT FP LGL+V PR G AL F
Sbjct:  146 MRRGGQRVATLIIYLNQPQRGGATTFPDLGLEVLPRGGQALFF 188
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: A0A520CE83_9BURK (2-oxoglutarate-dependent dioxygenase n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520CE83_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 4.250e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            R G RVAT+ +YLQ PE+GGAT FP +GL+V+P+ G A+ F
Sbjct:  211 RGGQRVATLVIYLQEPEQGGATTFPDIGLEVAPKRGTAVFF 251
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: UPI00083ADC5A (2OG-Fe(II) oxygenase n=1 Tax=Polaromonas jejuensis TaxID=457502 RepID=UPI00083ADC5A)

HSP 1 Score: 53.1 bits (126), Expect = 5.880e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            R G RVAT+ +YLQ P+EGGAT FP +GL V+PR G A+ F
Sbjct:  213 RGGQRVATLVMYLQEPQEGGATVFPDIGLQVAPRRGHAVFF 253
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: Q126D0_POLSJ (Procollagen-proline, 2-oxoglutarate-4-dioxygenase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) TaxID=296591 RepID=Q126D0_POLSJ)

HSP 1 Score: 51.6 bits (122), Expect = 2.040e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            R G RVAT+ +YL  PE+GGAT FP +GL V+PR G A+ F
Sbjct:  201 RGGQRVATLIMYLNEPEQGGATVFPDIGLQVTPRRGTAVFF 241
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: UPI0003B30EDB (2OG-Fe(II) oxygenase n=1 Tax=Aquaspirillum serpens TaxID=190 RepID=UPI0003B30EDB)

HSP 1 Score: 51.6 bits (122), Expect = 2.050e-6
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 MGRAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            +G  G RVAT+ LYL   +EGGAT FP LGL V PR G AL F
Sbjct:  199 LGHGGQRVATLVLYLNEVDEGGATEFPELGLSVRPRTGRALYF 241
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: A0A653JE96_9BURK (Prolyl 4-hydroxylase n=1 Tax=Burkholderiales bacterium 8X TaxID=2653183 RepID=A0A653JE96_9BURK)

HSP 1 Score: 51.6 bits (122), Expect = 2.080e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            R G RVAT+ +YLQ PE+GGAT FP +GL+V+P+ G  + F
Sbjct:  208 RGGQRVATLVMYLQEPEQGGATTFPDVGLEVAPKQGTGVFF 248
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: A0A244EGL8_9BURK (Proline dioxygenase n=1 Tax=Variovorax sp. JS1663 TaxID=1851577 RepID=A0A244EGL8_9BURK)

HSP 1 Score: 51.6 bits (122), Expect = 2.090e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            R G RVAT+ +YLQ PE+GGAT FP +GL+V+P+ G  + F
Sbjct:  212 RGGQRVATLVMYLQEPEQGGATTFPDVGLEVAPKRGTGVFF 252
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: A0A1M3BCZ3_9CHLA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlamydia sp. 32-24 TaxID=1895742 RepID=A0A1M3BCZ3_9CHLA)

HSP 1 Score: 51.2 bits (121), Expect = 2.420e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLFW 132
            R G RVA+  +YL  PEEGG T FP   L V+P+ GDALLF+
Sbjct:  159 RGGQRVASFLMYLNTPEEGGETIFPTANLSVTPKKGDALLFF 200
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: A0A2S0N122_9BURK (2-oxoglutarate-dependent dioxygenase n=1 Tax=Simplicispira suum TaxID=2109915 RepID=A0A2S0N122_9BURK)

HSP 1 Score: 51.2 bits (121), Expect = 2.870e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            R G RVAT+ +YL  P+ GGAT FP LGL VSP+ G+A+ F
Sbjct:  211 RGGQRVATLVMYLNTPQAGGATVFPCLGLTVSPQRGNAVFF 251
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BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Match: UPI0019A70208 (2OG-Fe(II) oxygenase n=1 Tax=Polaromonas sp. TaxID=1869339 RepID=UPI0019A70208)

HSP 1 Score: 51.2 bits (121), Expect = 2.920e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 RAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLF 129
            R G RVAT+ +YL  PEEGGAT FP +G+ V+PR G+A+ F
Sbjct:  222 RGGQRVATLIIYLFEPEEGGATVFPDIGVQVAPRRGNAVFF 262
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110356.2166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A060NIZ6_9BURK3.140e-760.47Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A520CE83_9BURK4.250e-758.542-oxoglutarate-dependent dioxygenase n=1 Tax=Vario... [more]
UPI00083ADC5A5.880e-760.982OG-Fe(II) oxygenase n=1 Tax=Polaromonas jejuensis... [more]
Q126D0_POLSJ2.040e-658.54Procollagen-proline, 2-oxoglutarate-4-dioxygenase ... [more]
UPI0003B30EDB2.050e-660.472OG-Fe(II) oxygenase n=1 Tax=Aquaspirillum serpens... [more]
A0A653JE96_9BURK2.080e-656.10Prolyl 4-hydroxylase n=1 Tax=Burkholderiales bacte... [more]
A0A244EGL8_9BURK2.090e-656.10Proline dioxygenase n=1 Tax=Variovorax sp. JS1663 ... [more]
A0A1M3BCZ3_9CHLA2.420e-657.14Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A2S0N122_9BURK2.870e-658.542-oxoglutarate-dependent dioxygenase n=1 Tax=Simpl... [more]
UPI0019A702082.920e-658.542OG-Fe(II) oxygenase n=1 Tax=Polaromonas sp. TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110356contigM-pyrifera_M_contig110356:6..137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.6943407-CDS-M-pyrifera_M_contig110356:5..1371622815614.6943407-CDS-M-pyrifera_M_contig110356:5..137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110356 6..137 -
1692277488.2971337-CDS-M-pyrifera_M_contig110356:5..1371692277488.2971337-CDS-M-pyrifera_M_contig110356:5..137Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110356 6..137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110356.2166.1prot_M-pyrifera_M_contig110356.2166.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110356 6..137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110356.2166.1

>prot_M-pyrifera_M_contig110356.2166.1 ID=prot_M-pyrifera_M_contig110356.2166.1|Name=mRNA_M-pyrifera_M_contig110356.2166.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
MGRAGARVATVFLYLQAPEEGGATRFPLLGLDVSPRAGDALLFW
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mRNA from alignment at M-pyrifera_M_contig110356:6..137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110356.2166.1 ID=mRNA_M-pyrifera_M_contig110356.2166.1|Name=mRNA_M-pyrifera_M_contig110356.2166.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig110356:6..137- (Macrocystis pyrifera P11B4 male)
ATGGGCAGGGCGGGGGCGCGGGTGGCGACGGTGTTTCTGTACCTGCAGGC
GCCCGAGGAGGGCGGCGCCACGCGCTTTCCCCTCCTGGGCCTGGACGTGA
GCCCGCGCGCAGGCGACGCTCTGCTCTTCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110356:6..137-

>mRNA_M-pyrifera_M_contig110356.2166.1 ID=mRNA_M-pyrifera_M_contig110356.2166.1|Name=mRNA_M-pyrifera_M_contig110356.2166.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig110356:6..137- (Macrocystis pyrifera P11B4 male)
ATGGGCAGGGCGGGGGCGCGGGTGGCGACGGTGTTTCTGTACCTGCAGGC
GCCCGAGGAGGGCGGCGCCACGCGCTTTCCCCTCCTGGGCCTGGACGTGA
GCCCGCGCGCAGGCGACGCTCTGCTCTTCTGGATGGGCAGGGCGGGGGCG
CGGGTGGCGACGGTGTTTCTGTACCTGCAGGCGCCCGAGGAGGGCGGCGC
CACGCGCTTTCCCCTCCTGGGCCTGGACGTGAGCCCGCGCGCAGGCGACG
CTCTGCTCTTCTGG
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