mRNA_M-pyrifera_M_contig110265.2155.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110265.2155.1
Unique NamemRNA_M-pyrifera_M_contig110265.2155.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A5N5SRU5_9CRUS (2',3'-cyclic-nucleotide 3'-phosphodiesterase (Fragment) n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5SRU5_9CRUS)

HSP 1 Score: 62.8 bits (151), Expect = 1.800e-9
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   43 VLVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            ++V++RG+PGSGKST+++ IQR+      H+  RV SAD  F K      YV+D   +  AH  CQE   +A+ E++ +VV+D
Sbjct:  113 IMVILRGLPGSGKSTISKHIQRK------HISCRVCSADNFFMKDGE---YVYDRSLIKEAHAQCQENAIKAVEEQISVVVID 186          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A444TJ76_ARMVU (2',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 Tax=Armadillidium vulgare TaxID=13347 RepID=A0A444TJ76_ARMVU)

HSP 1 Score: 60.8 bits (146), Expect = 1.020e-8
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   43 VLVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            ++V++RG+PGSGKST+ + I+R+      H+  R+ SAD  F K      YV+D   +  AH  CQE   +A+ E++ +VV+D
Sbjct:  113 IMVILRGLPGSGKSTIAKHIERK------HISCRICSADNFFMKDGE---YVYDRSLIKEAHAQCQENAIKAVEEQISVVVID 186          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A1V9YQ71_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ71_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.850e-8
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   52 VMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            V+RGVPGSGKS+L R ++ R   +G  + VRV SAD  FE+G  G  Y++D   L  AH  C   V  A+   V +VV+D
Sbjct:  489 VLRGVPGSGKSSLARHLRGRCDAQG--LSVRVCSADAFFEQGDGG--YIYDRSRLAEAHAFCHAAVLAAVAANVDVVVVD 564          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A6G0XX45_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XX45_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.170e-8
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   46 LVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            +V+MRG PGSGKSTLTR +Q      GR V+V   SADT FE  P G  Y  D   L  AH  C+     A+   VP+VV+D
Sbjct:  254 VVIMRGRPGSGKSTLTRVVQAMAHFHGREVEV--CSADTFFET-PLG--YYHDRNKLSEAHDACKAAFADAIARSVPVVVVD 330          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: W4H9B6_9STRA (Uncharacterized protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H9B6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.800e-7
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   46 LVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            +V++RG PGSGKSTLTR ++ + +  G   DV V SADTHF+  P G  Y +D   L  AH  C+     A+ + V +VV+D
Sbjct:  253 VVILRGRPGSGKSTLTRIVKAKAASLG--YDVAVCSADTHFDS-PWG--YHYDKAQLPAAHDACRLAFHDALQQHVAVVVVD 329          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: W2QDM7_PHYPN (tRNA_lig_CPD domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QDM7_PHYPN)

HSP 1 Score: 57.4 bits (137), Expect = 1.810e-7
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 VERAISAMETGGKGVLVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            V+  +S+ +TG K V+V++RG+PGSGKSTL R+I+     RG  V +   SAD  FE  P G  YVFD R L  AH  C+    +A+   +P  + D
Sbjct:  253 VDDMLSSKDTG-KPVVVILRGIPGSGKSTLGREIEAICHHRG--VALTACSADFFFET-PRG--YVFDVRKLGAAHSKCKGDFTRAVHGGIPRNISD 343          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A1V9ZDD5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDD5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.460e-7
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   46 LVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            +V++RG+PGSGKST++R +Q+    +G  V   + SADT+FE  P G  Y  +   L  AH+LC+ T  +A+   + ++V+D
Sbjct:  250 VVILRGLPGSGKSTISRLVQKMAIEQG--VSTVLCSADTYFES-PSG--YYHERSKLTEAHELCKSTFSRAISNNIDVIVVD 326          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A6A5AZT2_9STRA (AKAP7_NLS domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AZT2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.180e-7
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   46 LVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            +V++RGVPGSGKST +R I    +  G    VRV SAD+ F++      Y FD   L  AH  CQ  VQ AM   V +VV+D
Sbjct:  186 MVILRGVPGSGKSTSSRSIAALCAANG--WSVRVCSADSCFDQS---GGYKFDKSKLPLAHAQCQHEVQDAMKSTVDVVVVD 262          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A329SYL3_9STRA (tRNA_lig_CPD domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SYL3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.620e-7
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   34 GKGVLVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVP 276
            GK V+V++RG+PGSGKSTL R+I+     RG  V +   SAD  FE  P G  YVFD R L  AH  C+    +A+   +P
Sbjct:  264 GKPVVVILRGIPGSGKSTLGREIEAICRYRG--VALTACSADLFFET-PRG--YVFDVRKLGAAHSKCKGDFTKAVQGGIP 339          
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Match: A0A418E399_9STRA (RWD domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E399_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.170e-6
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   46 LVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFEKGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD 291
            +V++RGVPGSGKST +R I    +  G    VRV SAD+ F++      Y FD   L  AH  CQ  VQ AM   V +VV+D
Sbjct:  506 MVILRGVPGSGKSTTSRSIAVLCAANG--WSVRVCSADSCFDQS---GGYKFDKSKLPLAHAQCQHEVQDAMKSTVDVVVVD 582          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110265.2155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N5SRU5_9CRUS1.800e-940.962',3'-cyclic-nucleotide 3'-phosphodiesterase (Frag... [more]
A0A444TJ76_ARMVU1.020e-838.552',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 T... [more]
A0A1V9YQ71_9STRA3.850e-845.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0XX45_9STRA5.170e-847.56Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4H9B6_9STRA1.800e-743.90Uncharacterized protein n=11 Tax=Aphanomyces astac... [more]
W2QDM7_PHYPN1.810e-742.27tRNA_lig_CPD domain-containing protein n=10 Tax=Ph... [more]
A0A1V9ZDD5_9STRA4.460e-739.02Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6A5AZT2_9STRA8.180e-745.12AKAP7_NLS domain-containing protein n=1 Tax=Aphano... [more]
A0A329SYL3_9STRA8.620e-745.68tRNA_lig_CPD domain-containing protein n=1 Tax=Phy... [more]
A0A418E399_9STRA1.170e-645.12RWD domain-containing protein (Fragment) n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110265contigM-pyrifera_M_contig110265:1..291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.0530515-CDS-M-pyrifera_M_contig110265:0..2701622815614.0530515-CDS-M-pyrifera_M_contig110265:0..270Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110265 1..270 -
1692277487.9845557-CDS-M-pyrifera_M_contig110265:0..2701692277487.9845557-CDS-M-pyrifera_M_contig110265:0..270Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110265 1..270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.0671859-UTR-M-pyrifera_M_contig110265:270..2911622815614.0671859-UTR-M-pyrifera_M_contig110265:270..291Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110265 271..291 -
1692277487.9974186-UTR-M-pyrifera_M_contig110265:270..2911692277487.9974186-UTR-M-pyrifera_M_contig110265:270..291Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110265 271..291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110265.2155.1prot_M-pyrifera_M_contig110265.2155.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110265 1..270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110265.2155.1

>prot_M-pyrifera_M_contig110265.2155.1 ID=prot_M-pyrifera_M_contig110265.2155.1|Name=mRNA_M-pyrifera_M_contig110265.2155.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
METGGKGVLVVMRGVPGSGKSTLTRKIQRRMSRRGRHVDVRVASADTHFE
KGPHGALYVFDFRSLHRAHQLCQETVQQAMMEEVPLVVLD
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mRNA from alignment at M-pyrifera_M_contig110265:1..291-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110265.2155.1 ID=mRNA_M-pyrifera_M_contig110265.2155.1|Name=mRNA_M-pyrifera_M_contig110265.2155.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig110265:1..291- (Macrocystis pyrifera P11B4 male)
GTAGAACGTGCAATTTCTGCAATGGAAACAGGGGGCAAGGGGGTGCTGGT GGTAATGCGTGGTGTGCCAGGGTCTGGAAAGAGTACATTGACTAGGAAAA TTCAGCGACGTATGTCACGAAGAGGGCGTCATGTGGATGTGAGGGTTGCA TCTGCTGATACCCACTTTGAAAAAGGACCACATGGTGCATTGTATGTTTT CGACTTTCGTAGTTTACATCGAGCACATCAACTGTGTCAAGAAACAGTGC AGCAGGCAATGATGGAAGAAGTTCCACTTGTTGTTCTTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110265:1..291-

>mRNA_M-pyrifera_M_contig110265.2155.1 ID=mRNA_M-pyrifera_M_contig110265.2155.1|Name=mRNA_M-pyrifera_M_contig110265.2155.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig110265:1..291- (Macrocystis pyrifera P11B4 male)
ATGGAAACAGGGGGCAAGGGGGTGCTGGTGGTAATGCGTGGTGTGCCAGG
GTCTGGAAAGAGTACATTGACTAGGAAAATTCAGCGACGTATGTCACGAA
GAGGGCGTCATGTGGATGTGAGGGTTGCATCTGCTGATACCCACTTTGAA
AAAGGACCACATGGTGCATTGTATGTTTTCGACTTTCGTAGTTTACATCG
AGCACATCAACTGTGTCAAGAAACAGTGCAGCAGGCAATGATGGAAGAAG
TTCCACTTGTTGTTCTTGATATGGAAACAGGGGGCAAGGGGGTGCTGGTG
GTAATGCGTGGTGTGCCAGGGTCTGGAAAGAGTACATTGACTAGGAAAAT
TCAGCGACGTATGTCACGAAGAGGGCGTCATGTGGATGTGAGGGTTGCAT
CTGCTGATACCCACTTTGAAAAAGGACCACATGGTGCATTGTATGTTTTC
GACTTTCGTAGTTTACATCGAGCACATCAACTGTGTCAAGAAACAGTGCA
GCAGGCAATGATGGAAGAAGTTCCACTTGTTGTTCTTGAT
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