mRNA_M-pyrifera_M_contig110240.2148.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110240.2148.1
Unique NamemRNA_M-pyrifera_M_contig110240.2148.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110240.2148.1 vs. uniprot
Match: A0A2D9XK18_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2D9XK18_9FLAO)

HSP 1 Score: 58.5 bits (140), Expect = 5.730e-7
Identity = 44/183 (24.04%), Postives = 88/183 (48.09%), Query Frame = 1 
Query:   19 ILIGALTITSCETASDIDIGIVANKLDLRGEMHADSVIEVPLLSTRITTNS------LSDFFELKGTPEVRL---FVDNQFVEQLIIGPSDYEGRFET----FYRSPSGLKPEFGKNYGIEITSPNYETIFAETIVPEQFQITDVQLVQQKTPITEGYFGLPVTVWFEDDPNKEDYYLLEAFI 528
            I+I  L + SCE   D++I    + L + G +  DSV  V + S++   ++      + D   L     V L    +D+  V+  +I   ++ G   T    +Y     + P+ G  Y I+++  +YE+++A T++P   ++ D  ++   T  +   +   + V F+D+PN+ +YY +  F+
Sbjct:    4 IIIICLLLFSCEKVVDLNIPAHTSMLVVNGMLDTDSVPSVFISSSQGAFSNHPIPGCVLDANVLLYEDNVLLGEMILDSNHVDTFMILEDNWYGGINTEEISYYTYE--MNPKAGSTYSIDVSHYDYESVYATTMIPNNIELIDFNIIDNATDTS--IYNATLNVVFQDNPNQNNYYRIRLFL 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig110240.2148.1 vs. uniprot
Match: A0A2E7VT77_9FLAO (Uncharacterized protein n=3 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E7VT77_9FLAO)

HSP 1 Score: 57.0 bits (136), Expect = 1.960e-6
Identity = 44/182 (24.18%), Postives = 86/182 (47.25%), Query Frame = 1 
Query:   10 YLFILIGALTITSCETASDIDIGIVANKLDLRGEMHADSVIEVPLLSTRITTNSLSDFFELKGTPEVRLFVDNQFVEQL---IIGPS-------DYEGRFETFYRSPSGLKPEFGKNYGIEITSPNYETIFAETIVPEQFQITDVQLVQQKTPITEGYFGLPVTVWFEDDPNKEDYYLLEAF 525
            Y+++ +   +    ET  +++I      L L    + D+ +++ + ++    ++ +  F      EV L+ +N+ ++ L   +I P+       DY       Y   S + P+   NY I +  PNY +I AET +P+   I +V++    T   +   GL  +  F+D PN+++YY L+ F
Sbjct:    6 YMYVCLVLFSCGEMETVVNLEIPPHEPVLVLNANFNTDNNVQLSVSNSVGAFDNSAPIFLTDA--EVLLYKENEQIDXLTPDLINPTYVYYRMNDYGSDSVLMYYYKSNVTPQPNSNYKIVVNHPNYNSIQAETFIPDSLNIYNVEV---DTTSNDNIIGLRFS--FDDAPNQQNYYRLKLF 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig110240.2148.1 vs. uniprot
Match: A0A2E9QIK9_9FLAO (Uncharacterized protein n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E9QIK9_9FLAO)

HSP 1 Score: 55.8 bits (133), Expect = 4.980e-6
Identity = 51/179 (28.49%), Postives = 82/179 (45.81%), Query Frame = 1 
Query:   22 LIGALTITSC--ETASDIDIGIVANKLDLRGEMHADSVIEVPLL-STRITTNSLSDFFELKGTPEVRLFVDNQFVEQLIIGPS--------DYEGRFETFYRSPSGLKPEFGKNYGIEITSPNYETIFAETIVPEQFQITDVQLVQQKTPITEGYFGLPVTVWFEDDPNKEDYYLLEAF 525
            L+ +L + SC  ET  D+DI      L L G +  D+  ++ +  S    +NS   F        V L+ +NQFV+ L    +        +Y   +   Y   S   PE   NY IE++  +Y  I AET +P+   + ++ +    T  +E   G   T  F+DD N+++YY L+ F
Sbjct:    9 LLFSLILISCDMETVIDLDIPPHDPVLVLNGILDTDTNAQLVVSHSVGAFSNSNPSFI---NNANVMLYKNNQFVDSLYPDTNVIDVEYLNEYTVSYLPMYYYKSDYIPEKDANYRIEVSHSDYNPISAETSIPDDITLYNIDI---DTTSSEEKIGF--TFSFDDDANEQNYYRLKLF 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig110240.2148.1 vs. uniprot
Match: A0A2E6QW66_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E6QW66_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 4.270e-5
Identity = 48/184 (26.09%), Postives = 84/184 (45.65%), Query Frame = 1 
Query:   10 YLFILIGALTITSCETASDIDIGIVANKLDLRGEMHADSVIEVPLLSTRITTNSLSDFFELKGTPEVRLFVDNQFVEQLII------------GPSDYEGRFETFYRSPSGLKPEFGKNYGIEITSPNYETIFAETIVPEQFQITDVQLVQQKTPITEGYFGLPVTVWFEDDPNKEDYYLLEAF 525
            Y++I+I   +  + ET  D+DI      L + G +  D+ I + L+S  +   S ++        EV L+ ++  ++ L +            GP   +     +Y S   + P   KNY IE + PNY +I+A T +P+  +I D+ +    T   +   G   +  F DD N ++YY L+ F
Sbjct:    7 YIWIVIVYFSCENMETVVDLDIPETPPVLVMNGILDTDTTIRL-LVSHSVGAFS-NEIPSSINNAEVVLYENDVLLDTLNVNIDNTISYYFNNGPFSLDSIPMNYYESH--IIPSKNKNYRIEASHPNYPSIYANTFIPDDIEIYDIDI---DTISHDTQIGFSFS--FIDDTNADNYYRLKLF 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110240.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D9XK18_9FLAO5.730e-724.04Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
A0A2E7VT77_9FLAO1.960e-624.18Uncharacterized protein n=3 Tax=Flavobacteriales b... [more]
A0A2E9QIK9_9FLAO4.980e-628.49Uncharacterized protein n=2 Tax=Flavobacteriales b... [more]
A0A2E6QW66_9FLAO4.270e-526.09Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110240contigM-pyrifera_M_contig110240:37..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size531
Cds size531
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.7991166-CDS-M-pyrifera_M_contig110240:36..5671622815613.7991166-CDS-M-pyrifera_M_contig110240:36..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110240 37..567 +
1692277487.8931036-CDS-M-pyrifera_M_contig110240:36..5671692277487.8931036-CDS-M-pyrifera_M_contig110240:36..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110240 37..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110240.2148.1prot_M-pyrifera_M_contig110240.2148.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110240 37..567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110240.2148.1

>prot_M-pyrifera_M_contig110240.2148.1 ID=prot_M-pyrifera_M_contig110240.2148.1|Name=mRNA_M-pyrifera_M_contig110240.2148.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
MRNYLFILIGALTITSCETASDIDIGIVANKLDLRGEMHADSVIEVPLLS
TRITTNSLSDFFELKGTPEVRLFVDNQFVEQLIIGPSDYEGRFETFYRSP
SGLKPEFGKNYGIEITSPNYETIFAETIVPEQFQITDVQLVQQKTPITEG
YFGLPVTVWFEDDPNKEDYYLLEAFIL
back to top

mRNA from alignment at M-pyrifera_M_contig110240:37..567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110240.2148.1 ID=mRNA_M-pyrifera_M_contig110240.2148.1|Name=mRNA_M-pyrifera_M_contig110240.2148.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig110240:37..567+ (Macrocystis pyrifera P11B4 male)
ATGAGAAATTATTTATTCATATTAATTGGAGCTTTGACTATTACAAGTTG
TGAAACTGCTTCTGATATCGATATCGGCATAGTAGCCAACAAACTGGATT
TGCGAGGCGAAATGCATGCCGATAGTGTAATTGAGGTCCCTTTGTTAAGT
ACACGTATTACTACTAATAGCTTATCTGATTTTTTTGAATTAAAAGGTAC
GCCTGAAGTTCGTCTGTTTGTCGATAATCAATTTGTAGAACAACTGATCA
TTGGGCCGTCAGATTATGAAGGACGATTTGAAACCTTTTATCGAAGTCCA
TCAGGGCTCAAACCTGAATTCGGTAAGAACTATGGGATTGAAATCACTTC
GCCAAACTATGAGACCATTTTCGCTGAAACCATTGTGCCGGAGCAATTCC
AAATTACAGATGTTCAACTAGTACAACAAAAAACACCTATTACTGAAGGG
TATTTTGGGCTTCCTGTAACCGTATGGTTTGAAGATGATCCGAACAAAGA
AGATTATTATCTGTTAGAGGCCTTTATTCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110240:37..567+

>mRNA_M-pyrifera_M_contig110240.2148.1 ID=mRNA_M-pyrifera_M_contig110240.2148.1|Name=mRNA_M-pyrifera_M_contig110240.2148.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig110240:37..567+ (Macrocystis pyrifera P11B4 male)
ATGAGAAATTATTTATTCATATTAATTGGAGCTTTGACTATTACAAGTTG
TGAAACTGCTTCTGATATCGATATCGGCATAGTAGCCAACAAACTGGATT
TGCGAGGCGAAATGCATGCCGATAGTGTAATTGAGGTCCCTTTGTTAAGT
ACACGTATTACTACTAATAGCTTATCTGATTTTTTTGAATTAAAAGGTAC
GCCTGAAGTTCGTCTGTTTGTCGATAATCAATTTGTAGAACAACTGATCA
TTGGGCCGTCAGATTATGAAGGACGATTTGAAACCTTTTATCGAAGTCCA
TCAGGGCTCAAACCTGAATTCGGTAAGAACTATGGGATTGAAATCACTTC
GCCAAACTATGAGACCATTTTCGCTGAAACCATTGTGCCGGAGCAATTCC
AAATTACAGATGTTCAACTAGTACAACAAAAAACACCTATTACTGAAGGG
TATTTTGGGCTTCCTGTAACCGTATGGTTTGAAGATGATCCGAACAAAGA
AGATTATTATCTGTTAGAGGCCTTTATTCTGATGAGAAATTATTTATTCA
TATTAATTGGAGCTTTGACTATTACAAGTTGTGAAACTGCTTCTGATATC
GATATCGGCATAGTAGCCAACAAACTGGATTTGCGAGGCGAAATGCATGC
CGATAGTGTAATTGAGGTCCCTTTGTTAAGTACACGTATTACTACTAATA
GCTTATCTGATTTTTTTGAATTAAAAGGTACGCCTGAAGTTCGTCTGTTT
GTCGATAATCAATTTGTAGAACAACTGATCATTGGGCCGTCAGATTATGA
AGGACGATTTGAAACCTTTTATCGAAGTCCATCAGGGCTCAAACCTGAAT
TCGGTAAGAACTATGGGATTGAAATCACTTCGCCAAACTATGAGACCATT
TTCGCTGAAACCATTGTGCCGGAGCAATTCCAAATTACAGATGTTCAACT
AGTACAACAAAAAACACCTATTACTGAAGGGTATTTTGGGCTTCCTGTAA
CCGTATGGTTTGAAGATGATCCGAACAAAGAAGATTATTATCTGTTAGAG
GCCTTTATTCTG
back to top