mRNA_M-pyrifera_M_contig11024.2147.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11024.2147.1
Unique NamemRNA_M-pyrifera_M_contig11024.2147.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11024.2147.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 3.090e-67
Identity = 108/145 (74.48%), Postives = 117/145 (80.69%), Query Frame = 1 
Query:   94 DDLDGVGASLGRQTIPMEERFWERVGRYMPSANFRTLFRCTRPTFAKLVKKLYGTTGSRAADGGRGPEFNPCERTAMALYRLGHGAGVRETAALFGVSDSWVSNQTKDVISRVKDELIPDFL-SWPKRNDQDNISAAFERRTGFR 525
            D +DGVG S GRQ+IPMEERFW RVGR MPS NF  LFRC RPTFA LVK+LY T   RA+DGGRGP F+PCERTAM LYRLGHGAG R TAALFGVSD WV++ T + I+RV   LIP FL SWP RNDQDNISAAFERRTGFR
Sbjct:    5 DYIDGVGRSRGRQSIPMEERFWHRVGREMPSRNFMILFRCMRPTFAALVKELYDTLDVRASDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVSDGWVTSCTCEFITRVTARLIPRFLWSWPTRNDQDNISAAFERRTGFR 149
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BLAST of mRNA_M-pyrifera_M_contig11024.2147.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.640e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  280 GGRGPEFNPCERTAMALYRLGHGAGVRETAALFGVSDSWVSNQTKDVISRVKDELIPDFLSWPKRNDQDNISAAFE 507
            G RGP F+PCER A+ ++RLG  + VR+TA  FG+SD  VS  T +V  RV   L  + + WP   +Q ++SAA+E
Sbjct:    5 GRRGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWE 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11024.2147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRZ1_ECTSI3.090e-6774.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSG7_9PHAE3.640e-1146.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11024contigM-pyrifera_M_contig11024:5320..7133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog28532.XP_010536183.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs37KD8@33090,3G8UF@35493,3HPIJ@3699,KOG4585@1,KOG4585@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000330.1
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons2
Model size528
Cds size528
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.7531178-CDS-M-pyrifera_M_contig11024:5319..56321622815613.7531178-CDS-M-pyrifera_M_contig11024:5319..5632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11024 5320..5632 -
1692277487.8728538-CDS-M-pyrifera_M_contig11024:5319..56321692277487.8728538-CDS-M-pyrifera_M_contig11024:5319..5632Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11024 5320..5632 -
1622815613.7638938-CDS-M-pyrifera_M_contig11024:6918..71331622815613.7638938-CDS-M-pyrifera_M_contig11024:6918..7133Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11024 6919..7133 -
1692277487.884132-CDS-M-pyrifera_M_contig11024:6918..71331692277487.884132-CDS-M-pyrifera_M_contig11024:6918..7133Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11024 6919..7133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11024.2147.1prot_M-pyrifera_M_contig11024.2147.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11024 5320..7133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11024.2147.1

>prot_M-pyrifera_M_contig11024.2147.1 ID=prot_M-pyrifera_M_contig11024.2147.1|Name=mRNA_M-pyrifera_M_contig11024.2147.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
MHHQYTRLITKVVREEEIRAYLSALDEDEIQDDLDGVGASLGRQTIPMEE
RFWERVGRYMPSANFRTLFRCTRPTFAKLVKKLYGTTGSRAADGGRGPEF
NPCERTAMALYRLGHGAGVRETAALFGVSDSWVSNQTKDVISRVKDELIP
DFLSWPKRNDQDNISAAFERRTGFR*
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mRNA from alignment at M-pyrifera_M_contig11024:5320..7133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11024.2147.1 ID=mRNA_M-pyrifera_M_contig11024.2147.1|Name=mRNA_M-pyrifera_M_contig11024.2147.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1814bp|location=Sequence derived from alignment at M-pyrifera_M_contig11024:5320..7133- (Macrocystis pyrifera P11B4 male)
ATGCACCATCAGTACACCAGGCTTATCACGAAAGTGGTAAGAGAGGAGGA
GATCAGGGCGTACTTGAGCGCCCTAGACGAAGATGAGATTCAGGATGACC
TAGATGGCGTGGGAGCATCGCTAGGGAGGCAGACAATCCCGATGGAGGAG
CGTTTTTGGGAGCGTGTCGGAAGGTACATGCCATCCGCAAACTTCAGGAC
CCTCTTCCGTTGCACGTGAGTCGCTTTCCTTGATATCCGTCGTCAAATGG
CAAGCATTGGGTAGGTTGATCCGTAGGATGGTACTCGTAGGATTCAAACA
TTCGCATGTCTAGAGCGTATCAAAAACTGGCGCTGCTCTTTCGATAGCAG
CCGCACCTTTGTTGTCGTTGCTCTCCTTCGTTGGAGTTGTCTACGAAGCA
CGTGTTGAATTGATCCTTCGCGGTCGACTCATCTACAGCATATAGATGGG
CGTGATTTTCGGTGAGTGTTTCTAAGTAGTTGTTTGCACTCGAGCCTAAT
TTACGTATATCTTGTGACATGACGGCCACGTTTTTTTCACTCGTACATAC
GTACTCGTATACTGGTACAGCAGTATACAGTATACCTGGTACAGTAGTAC
TCGTACAGATCTACTTTGGACCTGCTATCATAGCTTGTGCAGCAGTCAGA
GACAGTCCATGCGGTGTACCAGTACCAAGCACGTAAACGAGCGGTGGCCG
CAAAGAATTGGTGTTGGCCTCTTGGCCGGTTATGTGAATCGCACTGCTTG
TGCCTGCCGCTGCCGCTGCCACTGCCGCTGCCGCTGCTGCTGCTCTGTCG
TAGACGCCGCCGCCGCCGTCTGCTGGTGGGGCTGTTCCTGCTGTTGCCGC
AACCGCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCTGCCGG
TGGGGCTGCTGCTGCTACTTACGGTACTGCTGCTGCTGCTGCTGCTGCTG
CCCTTGCTACTTATCTGACAATATAGAGCAAGACGGAGAGCTATGCGGCA
CGATGATTGCATCATAGGGTTAGTAGGTATACGTATAGCGCGTATACATA
TATACTTAATTTTTGTCAAAGTGTTTATTTTCACGTACAGCAGTAATGCT
GGCAGCACATCTCTCGCACAACCAGACACAGCAGCAGTGTATGGTGTAAG
TGGATGACAGCGGCGAGACAAGTGCCCTGACGACTAGACATCTACTCATT
TGGATGGCTGCACTGCTGCTGCTGCTCGTGCTTGTGCTTTCTCCTGCTGC
TCCAGTGCATTGTGTGTTGTAGCAGTATGTGTAGAAACTGGACATGCTGC
TGGTAGGGCACGTTCAGCGCGTGAAGTGTAATTTGAAGGTGAAACGAGTA
CGATGATATGGACTTCATTGACAACCCTGGGAAATATGCGAGTGTACAAC
ACAACTCTGGAGGATTTCGGGTTGACATTGATTAGCACAGCAGTAGCACT
AATAAATACCTCTGAGCCACTCCGTCTGTGTCACGTTTGTATTTTTTCCA
GGAGGCCAACGTTTGCGAAGCTTGTGAAAAAACTGTACGGGACAACTGGC
TCGCGCGCTGCTGATGGCGGTCGCGGTCCGGAATTCAACCCATGCGAGCG
AACGGCGATGGCCTTGTACCGTTTAGGCCACGGAGCGGGCGTGAGGGAGA
CGGCGGCGTTGTTCGGCGTATCTGACAGCTGGGTGTCGAATCAAACGAAA
GATGTTATAAGCAGGGTGAAGGACGAGCTCATCCCTGACTTTCTGTCCTG
GCCGAAGAGGAACGACCAGGACAACATATCGGCCGCATTCGAGCGCCGAA
CGGGATTCAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11024:5320..7133-

>mRNA_M-pyrifera_M_contig11024.2147.1 ID=mRNA_M-pyrifera_M_contig11024.2147.1|Name=mRNA_M-pyrifera_M_contig11024.2147.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig11024:5320..7133- (Macrocystis pyrifera P11B4 male)
ATGCACCATCAGTACACCAGGCTTATCACGAAAGTGGTAAGAGAGGAGGA
GATCAGGGCGTACTTGAGCGCCCTAGACGAAGATGAGATTCAGGATGACC
TAGATGGCGTGGGAGCATCGCTAGGGAGGCAGACAATCCCGATGGAGGAG
CGTTTTTGGGAGCGTGTCGGAAGGTACATGCCATCCGCAAACTTCAGGAC
CCTCTTCCGTTGCACATGCACCATCAGTACACCAGGCTTATCACGAAAGT
GGTAAGAGAGGAGGAGATCAGGGCGTACTTGAGCGCCCTAGACGAAGATG
AGATTCAGGATGACCTAGATGGCGTGGGAGCATCGCTAGGGAGGCAGACA
ATCCCGATGGAGGAGCGTTTTTGGGAGCGTGTCGGAAGGTACATGCCATC
CGCAAACTTCAGGACCCTCTTCCGTTGCACGAGGCCAACGTTTGCGAAGC
TTGTGAAAAAACTGTACGGGACAACTGGCTCGCGCGCTGCTGATGGCGGT
CGCGGTCCGGAATTCAACCCATGCGAGCGAACGGCGATGGCCTTGTACCG
TTTAGGCCACGGAGCGGGCGTGAGGGAGACGGCGGCGTTGTTCGGCGTAT
CTGACAGCTGGGTGTCGAATCAAACGAAAGATGTTATAAGCAGGGTGAAG
GACGAGCTCATCCCTGACTTTCTGTCCTGGCCGAAGAGGAACGACCAGGA
CAACATATCGGCCGCATTCGAGCGCCGAACGGGATTCAGGTGAGAGGCCA
ACGTTTGCGAAGCTTGTGAAAAAACTGTACGGGACAACTGGCTCGCGCGC
TGCTGATGGCGGTCGCGGTCCGGAATTCAACCCATGCGAGCGAACGGCGA
TGGCCTTGTACCGTTTAGGCCACGGAGCGGGCGTGAGGGAGACGGCGGCG
TTGTTCGGCGTATCTGACAGCTGGGTGTCGAATCAAACGAAAGATGTTAT
AAGCAGGGTGAAGGACGAGCTCATCCCTGACTTTCTGTCCTGGCCGAAGA
GGAACGACCAGGACAACATATCGGCCGCATTCGAGCGCCGAACGGGATTC
AGGTGA
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