mRNA_M-pyrifera_M_contig110239.2146.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110239.2146.1
Unique NamemRNA_M-pyrifera_M_contig110239.2146.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110239.2146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110239contigM-pyrifera_M_contig110239:262..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.705861-CDS-M-pyrifera_M_contig110239:261..3821622815613.705861-CDS-M-pyrifera_M_contig110239:261..382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110239 262..382 -
1692277487.8477786-CDS-M-pyrifera_M_contig110239:261..3821692277487.8477786-CDS-M-pyrifera_M_contig110239:261..382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110239 262..382 -
1622815613.7181234-CDS-M-pyrifera_M_contig110239:427..5821622815613.7181234-CDS-M-pyrifera_M_contig110239:427..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110239 428..582 -
1692277487.8617432-CDS-M-pyrifera_M_contig110239:427..5821692277487.8617432-CDS-M-pyrifera_M_contig110239:427..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110239 428..582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110239.2146.1prot_M-pyrifera_M_contig110239.2146.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110239 262..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110239.2146.1

>prot_M-pyrifera_M_contig110239.2146.1 ID=prot_M-pyrifera_M_contig110239.2146.1|Name=mRNA_M-pyrifera_M_contig110239.2146.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
RVVVLEGERGVGTSRCALQMAMELYTSNRWVVWVDGSSFDTLERDWHQVA
REELWALFSSLGTTGTNPELIPLPGFGKKERCVVVVDGVRDV
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mRNA from alignment at M-pyrifera_M_contig110239:262..582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110239.2146.1 ID=mRNA_M-pyrifera_M_contig110239.2146.1|Name=mRNA_M-pyrifera_M_contig110239.2146.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig110239:262..582- (Macrocystis pyrifera P11B4 male)
AGAGTCGTGGTGCTAGAAGGGGAGCGAGGTGTGGGAACATCCCGCTGTGC
ACTACAAATGGCTATGGAATTGTACACTTCGAATCGGTGGGTAGTGTGGG
TGGATGGGTCTTCGTTTGATACACTTGAGCGTGACTGGCATCAAGTGGCA
AGAGAGTTGAAGTTGGATTGCGCTGGAAAGAGTGCTGGTGAGTGTCGGAG
AGAGTTGTGGGCTCTCTTCTCTTCCCTTGGCACAACAGGCACCAATCCAG
AGCTGATACCATTGCCTGGGTTTGGAAAGAAAGAGCGCTGTGTGGTTGTG
GTGGATGGAGTCCGAGATGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110239:262..582-

>mRNA_M-pyrifera_M_contig110239.2146.1 ID=mRNA_M-pyrifera_M_contig110239.2146.1|Name=mRNA_M-pyrifera_M_contig110239.2146.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig110239:262..582- (Macrocystis pyrifera P11B4 male)
AGAGTCGTGGTGCTAGAAGGGGAGCGAGGTGTGGGAACATCCCGCTGTGC
ACTACAAATGGCTATGGAATTGTACACTTCGAATCGGTGGGTAGTGTGGG
TGGATGGGTCTTCGTTTGATACACTTGAGCGTGACTGGCATCAAGTGGCA
AGAGAAGAGTCGTGGTGCTAGAAGGGGAGCGAGGTGTGGGAACATCCCGC
TGTGCACTACAAATGGCTATGGAATTGTACACTTCGAATCGGTGGGTAGT
GTGGGTGGATGGGTCTTCGTTTGATACACTTGAGCGTGACTGGCATCAAG
TGGCAAGAGAAGAGTTGTGGGCTCTCTTCTCTTCCCTTGGCACAACAGGC
ACCAATCCAGAGCTGATACCATTGCCTGGGTTTGGAAAGAAAGAGCGCTG
TGTGGTTGTGGTGGATGGAGTCCGAGATGTGAGAGTTGTGGGCTCTCTTC
TCTTCCCTTGGCACAACAGGCACCAATCCAGAGCTGATACCATTGCCTGG
GTTTGGAAAGAAAGAGCGCTGTGTGGTTGTGGTGGATGGAGTCCGAGATG
TG
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