mRNA_M-pyrifera_M_contig110233.2144.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110233.2144.1
Unique NamemRNA_M-pyrifera_M_contig110233.2144.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: A0A2D5MYC6_9GAMM (Glycoside hydrolase n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A2D5MYC6_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 6.360e-22
Identity = 55/135 (40.74%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    7 EAFLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHF-VPVSPRDLLPGDLFWIQWPRAAHPMHLAVF----TGAGRIIHC-DERVKKVTEHLLPITWQPLIIERLR 393
            E  +A  RSY GV WRH+GR RRGIDC+GLVVL+    G  + D  NYGR P  D ++  + EHF  PVS  D  PGD+  ++W     P H+A+      G   +IH        V E+ +   WQ  I+E  R
Sbjct:    4 EQAVAEARSYKGVPWRHRGRSRRGIDCIGLVVLALAAGGFMMRDRTNYGREPWRDGLQREMREHFGEPVS--DWQPGDVALMRWDNTPEPSHVALIGAHPLGGLSLIHSYSHATGGVCENGIDAVWQKRIVEVYR 136          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: UPI000E69E1E1 (NlpC/P60 family protein n=1 Tax=Azospirillum brasilense TaxID=192 RepID=UPI000E69E1E1)

HSP 1 Score: 92.0 bits (227), Expect = 3.600e-21
Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    4 REAFLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGI--QVADNLNYGRVPDLDTMRAGLHEHFVPVSPRDLLPGDLFWIQWPRAAHPMHLAVFTGAGR---IIHCDERVKKVTEHLLPITWQPLIIERLR 393
            R  FL A RSY GV WRHQGR R G+DC+GLV+L+ARDIG   +  D   Y R PD   + + L+EH   +   ++ PGD+  + +  AA P H+ V   A     I+H     ++V EH L   +   I+   R
Sbjct:    4 RRRFLEAARSYIGVKWRHQGRSRTGLDCVGLVLLAARDIGYITEEVDFTEYRRAPDHAVLASMLNEHVERIEVSEIGPGDIVLMNF--AAFPTHIGVIGDAAAPHSIVHAYASARQVAEHRLDPDFAGRIVAAFR 136          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: UPI001A95B09B (C40 family peptidase n=1 Tax=Lysobacter enzymogenes TaxID=69 RepID=UPI001A95B09B)

HSP 1 Score: 85.9 bits (211), Expect = 7.850e-19
Identity = 54/124 (43.55%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   10 AFLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHFVPVSPR-DLLPGDLFWIQWPRAAHPMHLAV---FTGAG-RIIHCDERVKKVTEHLLPITW 366
            A   A R Y G  +RHQGR R G+DC+GLVVL+  D G  VAD   YGR P    +   L E F P   R DL PGD+  I++  A    H+A+   + G G  +IH D+ V +VTEH L   W
Sbjct:    3 ALPEAARGYLGSPFRHQGRSRSGLDCVGLVVLALADQGRAVADVTTYGRDPHHGLLEQHLVETFGPAIARTDLHPGDIVAIEYSGATR--HVAIVGDYPGGGLSLIHTDQTVGRVTEHRLDSRW 124          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: UPI0019D3F4FC (C40 family peptidase n=1 Tax=Bowmanella yangjiangensis TaxID=2811230 RepID=UPI0019D3F4FC)

HSP 1 Score: 84.7 bits (208), Expect = 2.650e-18
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1
Query:    7 EAFLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHF-VPVSPRDLLPGDLFWIQWPRAAHPMHLAVFTGAGR------IIHCDERVKKVTEHLLPITWQPLIIERLRWRAWAQ 411
            +A +A  RSY GV WRH+GR R GIDC+GL+V +    GIQ+ D ++YGR P  D +   + EHF  PV   D+  GD+  ++W     P H+ +    GR      +IH    +  VTEH +   W+  I+  + +R W +
Sbjct:    8 DAAIAEARSYIGVKWRHRGRSRFGIDCIGLLVHACAAGGIQMRDRVDYGREPWKDGLEREMREHFGEPVD--DMEAGDVVLMRWDDRPDPCHVGII---GRDQYGLTLIHSYSMIS-VTEHGIDDAWRKRIV--MVFRPWPR 141          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: A0A0Q5EXJ2_9PSED (NlpC/P60 domain-containing protein n=5 Tax=Pseudomonas TaxID=286 RepID=A0A0Q5EXJ2_9PSED)

HSP 1 Score: 82.4 bits (202), Expect = 1.590e-17
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   16 LAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHF-VPVSPRDLLPGDLFWIQWPRAAHPMHLAVFTGAGR----IIHCDERVKKVTEHLLPITWQPLIIERLR 393
            +A  R+Y G  WRH+GR++ GIDC+GL+V++    G  + D  +Y R P +D +   + EHF  PV   DL PGD+  + W     P H+ +  G G+    +IH   ++  VTEH +   W+  II   R
Sbjct:    1 MAKARTYIGTKWRHRGRNKFGIDCIGLLVVAMTAGGFVMRDRTDYSRTPHMDGLEREMLEHFGEPVE--DLRPGDVVLMAWDGQTEPSHVGLI-GNGQHGVTLIHSYSQIS-VTEHGIDAAWRKRIIRIYR 127          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: UPI0007E8EA97 (NlpC/P60 family protein n=1 Tax=Lysobacter antibioticus TaxID=84531 RepID=UPI0007E8EA97)

HSP 1 Score: 80.5 bits (197), Expect = 9.930e-17
Identity = 50/124 (40.32%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   22 ALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHFVPVSPR-DLLPGDLFWIQWPRAAHPMHLAVFT----GAGRIIHCDERVKKVTEHLLPITWQPLI 378
            + R Y G  +RHQGR R G+DC+GLVV++  D G  V D  +YGR P    + A L   F P   R DL PGD+  I + RA    H+ +      G   +IH D+ V +VTEH L   W   I
Sbjct:    7 SARGYLGTPFRHQGRSRSGLDCVGLVVVALVDAGRPVQDVTDYGRDPHDGLLEANLVREFGPSLGRFDLHPGDVVAIAYARATR--HVGIVGDYPFGGLSLIHTDQMVGRVTEHRLDSKWHSRI 128          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: UPI001BFCCDE5 (NlpC/P60 family protein n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=UPI001BFCCDE5)

HSP 1 Score: 80.5 bits (197), Expect = 1.780e-16
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:   13 FLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHFVPVSPRDLLPGDLFWIQWPRAAHPMHLAVFTGAG-RIIHCDERV-KKVTEHLLPITW 366
              AA RSY GV WRHQGR R G+DCLGLV+  A D+G+   D  +Y R    ++M     EH V ++  ++ PGD+  +++    H      +   G  +IH      +KV EHL    W
Sbjct:   21 ICAAARSYMGVPWRHQGRSREGMDCLGLVITVAHDLGLTEFDTRDYARQAKDESMLEQCREHLVEITRANVRPGDVAVMRFGANRHIGFFGDYLHGGLSLIHAYSNAPRKVVEHLFNDDW 140          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: A0A1D8IYT5_9BURK (NlpC/P60 domain-containing protein n=3 Tax=Delftia tsuruhatensis TaxID=180282 RepID=A0A1D8IYT5_9BURK)

HSP 1 Score: 78.6 bits (192), Expect = 6.630e-16
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 1
Query:    1 SREAFLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHFVPVSPRDLLPGDLFWIQWPRAAHPMHLAVFTGAG-RIIHCDERVKKVTEHLLPITWQPLI 378
            +R   +AA R + GV W+HQGR R G+DC+GL V    ++G+   D   YGR  + + M     +H  PV+   + PGD+  +      H   +A + G G  ++H    V+ V E  L   W+  I
Sbjct:    4 TRAQIVAAARGWIGVRWKHQGRSRAGVDCIGLAVCVRAELGLGHLDAAGYGRTAEDERMLDFCRQHMRPVAMAQIQPGDVLVMAQAGQRHMAIVADYPGGGLSLVHAYAGVRSVVEMRLDAVWRARI 130          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: A0A4R9QDH2_9HYPH (Peptidoglycan endopeptidase n=1 Tax=Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 TaxID=2496670 RepID=A0A4R9QDH2_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 3.050e-15
Identity = 50/135 (37.04%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    7 EAFLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHFVPVSPRDLLPGDLFWIQWPRAAHPMHLAVFT-----GAGRIIHCDERVKKVTEHLLPITWQPLIIERLRW 396
            EAF+AA R + GV W HQGR  RG+DC+GL+VLSAR IGI      +YGR       R  L +    V   +L  GD+      +    +H+A+ +     G  R+I        V +  L  T  PL + RLRW
Sbjct:    4 EAFVAAARGFIGVPWVHQGRSERGVDCVGLIVLSARAIGIDAPMKADYGRFQYYPQAREYLEQFCDRVGSPEL--GDIVLY---KTTQSLHMAIVSEVEDGGIARVIQALGHKSSVVDTALQFT--PLQLWRLRW 131          
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Match: UPI00166169E9 (NlpC/P60 family protein n=1 Tax=Sphingopyxis sp. LK2115 TaxID=2744558 RepID=UPI00166169E9)

HSP 1 Score: 74.7 bits (182), Expect = 2.610e-14
Identity = 48/138 (34.78%), Postives = 65/138 (47.10%), Query Frame = 1
Query:   10 AFLAALRSYDGVAWRHQGRDRR-GIDCLGLVVLSARDIGIQVADNLNYGRVPDLDTMRAGLHEHFVPVSPRDLLPGDLFWIQWPRAAHPMHLAV---FTGAGRIIHCDERVKKVTEHLLPITWQPLIIERLRWRAWAQ 411
            A +AA R + G  + HQGR R  G+DC+GLV+  A ++G+   D   Y R PD D +    HE   P+ P    PGD+  I     A   HLA+     G   IIH     ++V EH +   W   I+   R    AQ
Sbjct:   12 AVVAAARRWLGTPFCHQGRRRGVGVDCVGLVIAVAHELGLSDFDITGYARRPDSDLLARLAHELMQPIDPAAARPGDVLLIAIEGRAQ--HLAIRSDLAGDPAIIHAHAPRRRVVEHRIDADWAQRILAAFRLPGVAQ 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110233.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5MYC6_9GAMM6.360e-2240.74Glycoside hydrolase n=1 Tax=Pseudomonadales bacter... [more]
UPI000E69E1E13.600e-2139.26NlpC/P60 family protein n=1 Tax=Azospirillum brasi... [more]
UPI001A95B09B7.850e-1943.55C40 family peptidase n=1 Tax=Lysobacter enzymogene... [more]
UPI0019D3F4FC2.650e-1836.62C40 family peptidase n=1 Tax=Bowmanella yangjiange... [more]
A0A0Q5EXJ2_9PSED1.590e-1735.88NlpC/P60 domain-containing protein n=5 Tax=Pseudom... [more]
UPI0007E8EA979.930e-1740.32NlpC/P60 family protein n=1 Tax=Lysobacter antibio... [more]
UPI001BFCCDE51.780e-1636.67NlpC/P60 family protein n=1 Tax=Variovorax paradox... [more]
A0A1D8IYT5_9BURK6.630e-1632.28NlpC/P60 domain-containing protein n=3 Tax=Delftia... [more]
A0A4R9QDH2_9HYPH3.050e-1537.04Peptidoglycan endopeptidase n=1 Tax=Mesorhizobium ... [more]
UPI00166169E92.610e-1434.78NlpC/P60 family protein n=1 Tax=Sphingopyxis sp. L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110233contigM-pyrifera_M_contig110233:181..594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.5
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog1123020.AUIE01000007_gene3219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsCOG0791@1,COG0791@2
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.628728-CDS-M-pyrifera_M_contig110233:180..5941622815613.628728-CDS-M-pyrifera_M_contig110233:180..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110233 181..594 -
1692277487.8274002-CDS-M-pyrifera_M_contig110233:180..5941692277487.8274002-CDS-M-pyrifera_M_contig110233:180..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110233 181..594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110233.2144.1prot_M-pyrifera_M_contig110233.2144.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110233 181..594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110233.2144.1

>prot_M-pyrifera_M_contig110233.2144.1 ID=prot_M-pyrifera_M_contig110233.2144.1|Name=mRNA_M-pyrifera_M_contig110233.2144.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
SREAFLAALRSYDGVAWRHQGRDRRGIDCLGLVVLSARDIGIQVADNLNY
GRVPDLDTMRAGLHEHFVPVSPRDLLPGDLFWIQWPRAAHPMHLAVFTGA
GRIIHCDERVKKVTEHLLPITWQPLIIERLRWRAWAQ*
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mRNA from alignment at M-pyrifera_M_contig110233:181..594-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110233.2144.1 ID=mRNA_M-pyrifera_M_contig110233.2144.1|Name=mRNA_M-pyrifera_M_contig110233.2144.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig110233:181..594- (Macrocystis pyrifera P11B4 male)
AGCCGCGAGGCGTTCCTCGCGGCGTTGCGGTCGTATGATGGCGTCGCCTG GCGCCATCAGGGCCGCGACCGACGCGGGATCGATTGCCTGGGCCTCGTGG TGCTCAGTGCGCGGGACATCGGCATACAGGTGGCCGACAATCTGAATTAC GGCCGGGTGCCGGATCTCGATACGATGCGCGCCGGCCTGCATGAACATTT CGTGCCGGTCTCGCCGCGCGATTTATTGCCGGGCGATCTGTTCTGGATCC AGTGGCCGCGCGCGGCGCATCCGATGCACCTCGCGGTGTTCACCGGTGCC GGCCGGATCATCCACTGCGATGAACGGGTGAAAAAGGTCACCGAGCACCT ACTGCCGATCACCTGGCAGCCGTTGATTATCGAACGCCTGCGCTGGCGGG CCTGGGCGCAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110233:181..594-

>mRNA_M-pyrifera_M_contig110233.2144.1 ID=mRNA_M-pyrifera_M_contig110233.2144.1|Name=mRNA_M-pyrifera_M_contig110233.2144.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig110233:181..594- (Macrocystis pyrifera P11B4 male)
AGCCGCGAGGCGTTCCTCGCGGCGTTGCGGTCGTATGATGGCGTCGCCTG
GCGCCATCAGGGCCGCGACCGACGCGGGATCGATTGCCTGGGCCTCGTGG
TGCTCAGTGCGCGGGACATCGGCATACAGGTGGCCGACAATCTGAATTAC
GGCCGGGTGCCGGATCTCGATACGATGCGCGCCGGCCTGCATGAACATTT
CGTGCCGGTCTCGCCGCGCGATTTATTGCCGGGCGATCTGTTCTGGATCC
AGTGGCCGCGCGCGGCGCATCCGATGCACCTCGCGGTGTTCACCGGTGCC
GGCCGGATCATCCACTGCGATGAACGGGTGAAAAAGGTCACCGAGCACCT
ACTGCCGATCACCTGGCAGCCGTTGATTATCGAACGCCTGCGCTGGCGGG
CCTGGGCGCAATGAAGCCGCGAGGCGTTCCTCGCGGCGTTGCGGTCGTAT
GATGGCGTCGCCTGGCGCCATCAGGGCCGCGACCGACGCGGGATCGATTG
CCTGGGCCTCGTGGTGCTCAGTGCGCGGGACATCGGCATACAGGTGGCCG
ACAATCTGAATTACGGCCGGGTGCCGGATCTCGATACGATGCGCGCCGGC
CTGCATGAACATTTCGTGCCGGTCTCGCCGCGCGATTTATTGCCGGGCGA
TCTGTTCTGGATCCAGTGGCCGCGCGCGGCGCATCCGATGCACCTCGCGG
TGTTCACCGGTGCCGGCCGGATCATCCACTGCGATGAACGGGTGAAAAAG
GTCACCGAGCACCTACTGCCGATCACCTGGCAGCCGTTGATTATCGAACG
CCTGCGCTGGCGGGCCTGGGCGCAATGA
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