mRNA_M-pyrifera_M_contig110225.2142.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110225.2142.1
Unique NamemRNA_M-pyrifera_M_contig110225.2142.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110225.2142.1 vs. uniprot
Match: A0A7V2Y1E3_9BACT (PTS EIIA type-2 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y1E3_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 9.330e-16
Identity = 34/52 (65.38%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:    4 MLLTQYIAENCIVTDVEASNKADVLKELTNLLFDQKKLKGVGPALDQIMARE 159
            M+L++YIA+NCI+T+V A+NK+D +KELT+LLFD+KK+KG+G ALDQ++ARE
Sbjct:    1 MVLSKYIAKNCILTEVAAANKSDAIKELTHLLFDKKKMKGMGEALDQVVARE 52
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BLAST of mRNA_M-pyrifera_M_contig110225.2142.1 vs. uniprot
Match: A0A7C8AM12_9BACT (PTS transporter subunit EIIA n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8AM12_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 9.590e-15
Identity = 35/52 (67.31%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    4 MLLTQYIAENCIVTDVEASNKADVLKELTNLLFDQKKLKGVGPALDQIMARE 159
            MLLT+YIA++CIV  ++A+NK D LKELT+LLF++K++K VGPALDQI+ARE
Sbjct:    1 MLLTKYIAKSCIVPRMKATNKPDALKELTHLLFEKKRMKSVGPALDQIVARE 52
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BLAST of mRNA_M-pyrifera_M_contig110225.2142.1 vs. uniprot
Match: A0A1V6EZ61_9BACT (PTS system fructose-specific EIIABC component n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6EZ61_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 2.660e-13
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    4 MLLTQYIAENCIVTDVEASNKADVLKELTNLLFDQKKLKGVGPALDQIMARE 159
            M++T YIAENCI+ ++    K + LKELT+LLFD KKLKGV  ALDQIMARE
Sbjct:    1 MVITDYIAENCILPEMRGKTKPEALKELTHLLFDAKKLKGVDAALDQIMARE 52
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BLAST of mRNA_M-pyrifera_M_contig110225.2142.1 vs. uniprot
Match: A0A1V5YYL7_9BACT (PTS system fructose-specific EIIABC component n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YYL7_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.880e-10
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 MLLTQYIAENCIVTDVEASNKADVLKELTNLLFDQKKLKGVGPALDQIMARE 159
            MLLT Y++ +C++ +V+   KAD LKELT+LL   +KLKG+  ALDQIMARE
Sbjct:    1 MLLTDYLSADCVLPEVQTKIKADALKELTDLLIKNRKLKGLEAALDQIMARE 52
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110225.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7V2Y1E3_9BACT9.330e-1665.38PTS EIIA type-2 domain-containing protein n=1 Tax=... [more]
A0A7C8AM12_9BACT9.590e-1567.31PTS transporter subunit EIIA n=1 Tax=Candidatus Hy... [more]
A0A1V6EZ61_9BACT2.660e-1365.38PTS system fructose-specific EIIABC component n=1 ... [more]
A0A1V5YYL7_9BACT1.880e-1057.69PTS system fructose-specific EIIABC component n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110225contigM-pyrifera_M_contig110225:441..599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.550694-UTR-M-pyrifera_M_contig110225:440..4431622815613.550694-UTR-M-pyrifera_M_contig110225:440..443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110225 441..443 +
1692277487.792033-UTR-M-pyrifera_M_contig110225:440..4431692277487.792033-UTR-M-pyrifera_M_contig110225:440..443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110225 441..443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.5658538-CDS-M-pyrifera_M_contig110225:443..5991622815613.5658538-CDS-M-pyrifera_M_contig110225:443..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110225 444..599 +
1692277487.8061326-CDS-M-pyrifera_M_contig110225:443..5991692277487.8061326-CDS-M-pyrifera_M_contig110225:443..599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110225 444..599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110225.2142.1prot_M-pyrifera_M_contig110225.2142.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110225 444..599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110225.2142.1

>prot_M-pyrifera_M_contig110225.2142.1 ID=prot_M-pyrifera_M_contig110225.2142.1|Name=mRNA_M-pyrifera_M_contig110225.2142.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
MLLTQYIAENCIVTDVEASNKADVLKELTNLLFDQKKLKGVGPALDQIMA
RE
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mRNA from alignment at M-pyrifera_M_contig110225:441..599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110225.2142.1 ID=mRNA_M-pyrifera_M_contig110225.2142.1|Name=mRNA_M-pyrifera_M_contig110225.2142.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig110225:441..599+ (Macrocystis pyrifera P11B4 male)
TTTATGTTGCTTACCCAGTACATCGCCGAAAACTGTATCGTCACCGACGT
TGAGGCCTCTAATAAAGCCGATGTGCTCAAAGAGCTGACGAACTTACTCT
TTGATCAGAAAAAACTGAAGGGTGTGGGGCCGGCGCTGGACCAGATCATG
GCCCGGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110225:441..599+

>mRNA_M-pyrifera_M_contig110225.2142.1 ID=mRNA_M-pyrifera_M_contig110225.2142.1|Name=mRNA_M-pyrifera_M_contig110225.2142.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig110225:441..599+ (Macrocystis pyrifera P11B4 male)
ATGTTGCTTACCCAGTACATCGCCGAAAACTGTATCGTCACCGACGTTGA
GGCCTCTAATAAAGCCGATGTGCTCAAAGAGCTGACGAACTTACTCTTTG
ATCAGAAAAAACTGAAGGGTGTGGGGCCGGCGCTGGACCAGATCATGGCC
CGGGAAATGTTGCTTACCCAGTACATCGCCGAAAACTGTATCGTCACCGA
CGTTGAGGCCTCTAATAAAGCCGATGTGCTCAAAGAGCTGACGAACTTAC
TCTTTGATCAGAAAAAACTGAAGGGTGTGGGGCCGGCGCTGGACCAGATC
ATGGCCCGGGAA
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