mRNA_M-pyrifera_M_contig110194.2127.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110194.2127.1
Unique NamemRNA_M-pyrifera_M_contig110194.2127.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A2E7A3Y2_9ACTN (Isomerase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7A3Y2_9ACTN)

HSP 1 Score: 174 bits (440), Expect = 1.240e-50
Identity = 76/112 (67.86%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AEL+NAQ+APHIYCGP+AHAAA H+G   PNFL+LETI+TDFHD ++ +PL W+ G+++ PT PGLG+EL HDVI+ +PYETGGRLHLEMTQ+ +DS NT+L+SEL+
Sbjct:  300 KIAALAELYNAQIAPHIYCGPVAHAAATHLGFTLPNFLILETIRTDFHDAVLQEPLMWESGWMLPPTKPGLGIELNHDVINDHPYETGGRLHLEMTQTPLDSNNTRLSSELD 411
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BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A2A5YMS8_9ACTN (Isomerase n=1 Tax=Acidimicrobiales bacterium MED-G01 TaxID=1986263 RepID=A0A2A5YMS8_9ACTN)

HSP 1 Score: 174 bits (440), Expect = 1.270e-50
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AELFNAQVAPHIYCGP+AHAAA H+    PNFL+LETIQTDFHD+++ +PL WD G+++ P  PGLG+EL HDV+  NPYETGGRLHLEMTQ+ +DS N KL SELE
Sbjct:  300 KIAAVAELFNAQVAPHIYCGPVAHAAATHLSFTLPNFLILETIQTDFHDSVICEPLTWDTGWMLPPMKPGLGVELNHDVLRDNPYETGGRLHLEMTQTPLDSNNAKLASELE 411
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BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A2E4AMW9_9ACTN (Isomerase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4AMW9_9ACTN)

HSP 1 Score: 159 bits (403), Expect = 2.490e-48
Identity = 71/112 (63.39%), Postives = 92/112 (82.14%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AELFNAQVAPHIYCGP+AHAAA H+G   PNFL+LETI +DFH  +V  PL+W+ G+++ P  PGLG+ L HDV+  +PY+TGGRLHLEM+Q+ +DS N++L SEL+
Sbjct:   24 KIAALAELFNAQVAPHIYCGPVAHAAATHLGFTLPNFLILETILSDFHQEVVASPLDWEAGWMLPPREPGLGVHLNHDVLADHPYDTGGRLHLEMSQTPLDSNNSRLASELD 135
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BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A2E6DQR8_9ACTN (Isomerase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6DQR8_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 2.970e-48
Identity = 75/112 (66.96%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AELFNAQ+APHIYCGPIAHAAA H+G   PNFL+LETI +DFH+++V +PL+WD G+++ PT PGLG+EL HDV+  +PY TGGRLHLEMTQ+ +DS N++L  ELE
Sbjct:  300 KIAALAELFNAQIAPHIYCGPIAHAAATHLGFTLPNFLILETILSDFHNSVVRKPLDWDAGWMVPPTGPGLGVELNHDVVLGHPYTTGGRLHLEMTQTPLDSNNSRLARELE 411
[Close]
BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A496WH83_9GAMM (Mandelate racemase/muconate lactonizing enzyme family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WH83_9GAMM)

HSP 1 Score: 163 bits (412), Expect = 1.800e-46
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIA +AELFNAQ+APHIYCGP+AHAAAAHV  +SPNFL+LETIQT+FHD I+ +PL W+ G+ +APT PGLG+EL   V++ NPY +GGRLHLEM Q+ + SAN K+ +++E
Sbjct:  300 KIAVIAELFNAQLAPHIYCGPVAHAAAAHVSFSSPNFLILETIQTEFHDAILQKPLVWEQGYQLAPTEPGLGIELNEKVLEENPYTSGGRLHLEMCQTALSSANNKIITDIE 411
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BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A2D9JRW0_9GAMM (Isomerase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D9JRW0_9GAMM)

HSP 1 Score: 162 bits (410), Expect = 3.630e-46
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIA +AELFNAQ+APHIYCGPIAHAAAA V  +SPNFL+LETIQT FHD IV QPL W+ G+L+ P  PG+GLEL  + I+A+PY TGGRLHLEM Q+V+DSAN     E+E
Sbjct:  300 KIAVIAELFNAQIAPHIYCGPIAHAAAAQVAFSSPNFLILETIQTPFHDAIVRQPLPWEAGYLLPPNRPGIGLELNEEAIEAHPYTTGGRLHLEMCQTVLDSANRLKIQEIE 411
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BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A3C1JKW7_9ACTN (Isomerase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1JKW7_9ACTN)

HSP 1 Score: 159 bits (402), Expect = 7.550e-46
Identity = 72/112 (64.29%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AELFNAQ+APHIYCGPIAHAAA H+G   PNFL+LETI +DFHD+IV + L W+ G++ AP  PGLG+EL H+ + A+PY TGGRLHLEMTQ+ + S N++L  EL+
Sbjct:  212 KIAALAELFNAQIAPHIYCGPIAHAAATHLGFTLPNFLILETILSDFHDSIVTKALAWEAGYMSAPKDPGLGVELNHEALSAHPYSTGGRLHLEMTQTALSSNNSRLARELD 323
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BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A2E7T3U3_9ACTN (Isomerase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E7T3U3_9ACTN)

HSP 1 Score: 158 bits (400), Expect = 1.080e-44
Identity = 71/112 (63.39%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AELFNAQVAPHIYCGP+AHAAA H+G   PNFL+LETI +DFH  +V  PL+W+ G+++ P  PGLG+ L HDV+  +PY TGGRLHLEM Q+ +DS N++L SEL+
Sbjct:  300 KIAALAELFNAQVAPHIYCGPVAHAAATHLGFTLPNFLILETILSDFHQQVVASPLDWESGWMLPPREPGLGVHLNHDVLANHPYTTGGRLHLEMXQTPLDSNNSRLASELD 411
[Close]
BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A6L8CPE6_9GAMM (Mandelate racemase/muconate lactonizing enzyme family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8CPE6_9GAMM)

HSP 1 Score: 158 bits (400), Expect = 1.080e-44
Identity = 71/112 (63.39%), Postives = 94/112 (83.93%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AELFNAQ+APH+YCGPIAHAAAAHVG +SPNFL+LETI T FH+ I+++PL W+ G+LIAP  PGLG+EL  +V++ +PY +GGRLHLEM Q+ + S N ++ +E+E
Sbjct:  300 KIAALAELFNAQIAPHVYCGPIAHAAAAHVGFSSPNFLILETILTGFHEDILVRPLRWEAGYLIAPEEPGLGIELNEEVMERHPYTSGGRLHLEMCQTPLPSDNRRIITEIE 411
[Close]
BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Match: A0A0C1UIX4_9ACTN (MR_MLE domain-containing protein n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A0C1UIX4_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 1.520e-44
Identity = 72/112 (64.29%), Postives = 88/112 (78.57%), Query Frame = 1 
Query:    1 KIAAMAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQPLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSANTKLTSELE 336
            KIAA+AELFNAQVAPHIYCGP+AHAAA H+G   PNFL+LETI +DFHD +    L W++G+++ P+ PGLG+EL H  +  NPYE+GGRLHLEMTQ  VDS N KL  EL+
Sbjct:  300 KIAAIAELFNAQVAPHIYCGPVAHAAATHLGFTLPNFLILETILSDFHDQVAHSSLRWENGWMMPPSQPGLGIELNHTALSDNPYESGGRLHLEMTQVPVDSNNKKLADELD 411
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110194.2127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7A3Y2_9ACTN1.240e-5067.86Isomerase n=1 Tax=Acidimicrobiaceae bacterium TaxI... [more]
A0A2A5YMS8_9ACTN1.270e-5070.54Isomerase n=1 Tax=Acidimicrobiales bacterium MED-G... [more]
A0A2E4AMW9_9ACTN2.490e-4863.39Isomerase (Fragment) n=1 Tax=Acidimicrobiaceae bac... [more]
A0A2E6DQR8_9ACTN2.970e-4866.96Isomerase n=1 Tax=Acidimicrobiaceae bacterium TaxI... [more]
A0A496WH83_9GAMM1.800e-4664.29Mandelate racemase/muconate lactonizing enzyme fam... [more]
A0A2D9JRW0_9GAMM3.630e-4667.86Isomerase n=1 Tax=Gammaproteobacteria bacterium Ta... [more]
A0A3C1JKW7_9ACTN7.550e-4664.29Isomerase n=1 Tax=Acidimicrobiaceae bacterium TaxI... [more]
A0A2E7T3U3_9ACTN1.080e-4463.39Isomerase n=2 Tax=Actinobacteria TaxID=201174 RepI... [more]
A0A6L8CPE6_9GAMM1.080e-4463.39Mandelate racemase/muconate lactonizing enzyme fam... [more]
A0A0C1UIX4_9ACTN1.520e-4464.29MR_MLE domain-containing protein n=4 Tax=Actinobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110194contigM-pyrifera_M_contig110194:260..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score133.7
Seed ortholog evalue5.4e-29
Seed eggNOG ortholog1469245.JFBG01000080_gene297
Preferred namedgoD
KEGG rclassRC00307,RC00435
KEGG koko:K01631
KEGG ReactionR01064
KEGG Pathwayko00052,ko01100,map00052,map01100
KEGG ModuleM00552
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the dehydration of D-galactonate to 2-keto-3- deoxy-D-galactonate
EggNOG OGs1MURK@1224,1RPIT@1236,COG4948@1,COG4948@2
EC4.1.2.21
COG Functional cat.M
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size339
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.7239764-CDS-M-pyrifera_M_contig110194:259..5861622815612.7239764-CDS-M-pyrifera_M_contig110194:259..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110194 260..586 -
1692277487.316026-CDS-M-pyrifera_M_contig110194:259..5861692277487.316026-CDS-M-pyrifera_M_contig110194:259..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110194 260..586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.734537-UTR-M-pyrifera_M_contig110194:586..5981622815612.734537-UTR-M-pyrifera_M_contig110194:586..598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110194 587..598 -
1692277487.3262534-UTR-M-pyrifera_M_contig110194:586..5981692277487.3262534-UTR-M-pyrifera_M_contig110194:586..598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig110194 587..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110194.2127.1prot_M-pyrifera_M_contig110194.2127.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110194 260..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110194.2127.1

>prot_M-pyrifera_M_contig110194.2127.1 ID=prot_M-pyrifera_M_contig110194.2127.1|Name=mRNA_M-pyrifera_M_contig110194.2127.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MAELFNAQVAPHIYCGPIAHAAAAHVGLASPNFLVLETIQTDFHDTIVMQ
PLEWDDGFLIAPTAPGLGLELRHDVIDANPYETGGRLHLEMTQSVVDSAN
TKLTSELE*
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mRNA from alignment at M-pyrifera_M_contig110194:260..598-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110194.2127.1 ID=mRNA_M-pyrifera_M_contig110194.2127.1|Name=mRNA_M-pyrifera_M_contig110194.2127.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig110194:260..598- (Macrocystis pyrifera P11B4 male)
AAGATCGCGGCCATGGCCGAACTGTTCAACGCCCAGGTGGCGCCACACAT
CTACTGTGGCCCGATCGCCCATGCGGCCGCGGCGCACGTGGGGTTGGCGT
CACCGAACTTCTTGGTCCTCGAGACGATCCAGACCGACTTCCACGACACC
ATCGTGATGCAACCGCTCGAATGGGACGACGGCTTCCTGATCGCTCCGAC
CGCCCCCGGGCTCGGCCTCGAACTTCGCCATGACGTGATCGACGCCAACC
CCTACGAGACCGGAGGTCGGCTCCACCTCGAGATGACCCAGAGTGTCGTC
GACTCCGCCAACACCAAACTCACCAGCGAACTCGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110194:260..598-

>mRNA_M-pyrifera_M_contig110194.2127.1 ID=mRNA_M-pyrifera_M_contig110194.2127.1|Name=mRNA_M-pyrifera_M_contig110194.2127.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig110194:260..598- (Macrocystis pyrifera P11B4 male)
ATGGCCGAACTGTTCAACGCCCAGGTGGCGCCACACATCTACTGTGGCCC
GATCGCCCATGCGGCCGCGGCGCACGTGGGGTTGGCGTCACCGAACTTCT
TGGTCCTCGAGACGATCCAGACCGACTTCCACGACACCATCGTGATGCAA
CCGCTCGAATGGGACGACGGCTTCCTGATCGCTCCGACCGCCCCCGGGCT
CGGCCTCGAACTTCGCCATGACGTGATCGACGCCAACCCCTACGAGACCG
GAGGTCGGCTCCACCTCGAGATGACCCAGAGTGTCGTCGACTCCGCCAAC
ACCAAACTCACCAGCGAACTCGAGTAGATGGCCGAACTGTTCAACGCCCA
GGTGGCGCCACACATCTACTGTGGCCCGATCGCCCATGCGGCCGCGGCGC
ACGTGGGGTTGGCGTCACCGAACTTCTTGGTCCTCGAGACGATCCAGACC
GACTTCCACGACACCATCGTGATGCAACCGCTCGAATGGGACGACGGCTT
CCTGATCGCTCCGACCGCCCCCGGGCTCGGCCTCGAACTTCGCCATGACG
TGATCGACGCCAACCCCTACGAGACCGGAGGTCGGCTCCACCTCGAGATG
ACCCAGAGTGTCGTCGACTCCGCCAACACCAAACTCACCAGCGAACTCGA
GTAG
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