mRNA_M-pyrifera_M_contig110047.2097.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110047.2097.1
Unique NamemRNA_M-pyrifera_M_contig110047.2097.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: UPI001EDD230F (autotransporter domain-containing protein n=1 Tax=Methylobacterium aerolatum TaxID=418708 RepID=UPI001EDD230F)

HSP 1 Score: 58.2 bits (139), Expect = 1.740e-6
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  247 PARHGAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQGRPFAEVRTDAWSLGGYGRWRDGPWSLDAIASYARQQFKSIRTL 558
            P   G W +GFG  G+   GG          G AAG DVRL +G+ +G+VG ++E+TLD    F   R  +   G YG +  GP SL   A YA +   + RT+
Sbjct:  761 PTVVGIWGQGFGAFGSASSGGNAFGLDRTLAGFAAGLDVRLPSGIKLGVVGGYTENTLDTTGRFESARVTSGFGGIYGGYELGPVSLRLGAVYADESLHTRRTV 864          
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: UPI001EE3696A (autotransporter domain-containing protein n=3 Tax=Methylobacterium TaxID=407 RepID=UPI001EE3696A)

HSP 1 Score: 56.2 bits (134), Expect = 7.900e-6
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 1
Query:  247 PARHGAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQGRPFAEVRTDAWSLGGYGRWRDGPWSLDAIASYARQQFKSIRTL 558
            P   G W +GFG  G+   GG          G AAG DVRL +G  +G+VG ++E+TLD    F      +   G YG +  GP S+   A YA +  ++ RT+
Sbjct:  794 PTVVGVWGQGFGAFGSASSGGNAFGLDRTLAGFAAGLDVRLPSGFKLGVVGGYTENTLDTTGRFESATVTSGFGGVYGGYELGPVSVRLGAVYADESLRTRRTV 897          
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: A0A1I3DNI3_9PSED (Outer membrane autotransporter barrel domain-containing protein n=2 Tax=Pseudomonas guineae TaxID=425504 RepID=A0A1I3DNI3_9PSED)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-5
Identity = 38/118 (32.20%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  244 GPARHGAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSEST--LDQGRPFAEVRTDAWSLGGYGRWRDGPWSLDAIASYARQQFKSIRTLALGAGA-GDVS 588
            G AR+G W++ FG + N D+  G+        G + G D RL     +G    ++++   L+  R       + +   GY     GPW LDA+ +YARQ+F++ R   LG+ A GD S
Sbjct:  297 GSARYGLWMKAFGSSSNQDIRDGYSGYDANTSGFSLGADTRLKNDWIVGGALTYAKTNVGLNDLRNGDSSDLNTYQFTGYASRDFGPWYLDAMLAYARQEFETQRYTGLGSVAKGDFS 414          
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: A0A519YZD7_9BURK (Autotransporter outer membrane beta-barrel domain-containing protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519YZD7_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 2.370e-5
Identity = 59/190 (31.05%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   10 ARLYTAINALADDDITVALESIAGTSHAGTIRALGQGQRAANQLITQRLDAV-AGGFA-SLRG---GGAGLLAGSALGLGVAPG--PARHGAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQGRPFAEVRTD--AWSLGGYGRWRDGPWSLDAIASYARQQFKSIR 552
            A   TA++AL+ D   VAL+ IA  ++    +A  Q    A   +  R+DAV   GF  SL      G  ++A S  G G+     P  HG W + FG        GGF        GL+ G D  +N    +G    F+++ +     F    +D   + + GY     GPW L+ + +YARQQF S+R
Sbjct:  228 ATALTALSALSADQQAVALQHIAPQTNRALSQASAQTVSGALDTVQVRMDAVRTSGFTPSLMDDYLSGKLMVASSDSGAGLVSDDTPLTHGVWGKVFGSEARQGAHGGFAGYKANTYGLSLGTDTLVNNKWVLGAAFTFADTDVGLRDGFTGDGSDIKTYQVTGYFTRDFGPWYLEGMLAYARQQFDSVR 417          
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: UPI001FBAE20F (autotransporter domain-containing protein n=1 Tax=Methylobacterium sp. J-030 TaxID=2836627 RepID=UPI001FBAE20F)

HSP 1 Score: 54.3 bits (129), Expect = 3.380e-5
Identity = 43/113 (38.05%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  247 PARHGAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQ-GRPFAEVRTDAWSL-----GGYGRWRDGPWSLDAIASYARQQFKSIRTLALG 567
            P   G W +GFG  G  D GG   A   Q  G AAG DVRL +G+  G+VG ++E++LD  GR     R ++ +L     G YG    GP SL   A YA    ++ R +  G
Sbjct:  587 PQVFGLWGQGFGSFGTADGGGNAFALDRQIAGFAAGADVRLPSGLRFGVVGGYTEASLDTAGRTGGVSRAESATLKSGFGGVYGGIELGPLSLRLGALYADTDARTRRAVLYG 699          
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: A0A1H0H0F4_9HYPH (Outer membrane autotransporter barrel domain-containing protein n=2 Tax=Methylobacterium TaxID=407 RepID=A0A1H0H0F4_9HYPH)

HSP 1 Score: 54.3 bits (129), Expect = 3.560e-5
Identity = 43/113 (38.05%), Postives = 55/113 (48.67%), Query Frame = 1
Query:  247 PARHGAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQ-----GRPFAEVRTDAWSLGG-YGRWRDGPWSLDAIASYARQQFKSIRTLALG 567
            P   G W +GFG  G  + GG       Q  G AAG DVRL +G+  G+VG ++E++LD      G   AE  T     GG YG    GP SL   A YA    ++ R +A G
Sbjct:  765 PQMFGLWGQGFGSFGTANSGGNAFDLDRQIAGFAAGADVRLPSGLRFGVVGGYTEASLDSAGRTGGMSRAESATLKSGFGGVYGGTEFGPLSLRLGAIYADTDARTRRAVAYG 877          
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: A0A509EEK6_9HYPH (Extracellular serine protease n=2 Tax=Methylobacterium symbioticum TaxID=2584084 RepID=A0A509EEK6_9HYPH)

HSP 1 Score: 53.5 bits (127), Expect = 6.590e-5
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 1
Query:  247 PARHGAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQGRPFAEVRTDAWSLGGYGRWRDGPWSLDAIASYARQQFKSIRTLA 561
            P   G W +GFG  GN    G       Q  G A G D+RL +G+++GLVG ++ ++LD          ++   G YG +  GP SL   A YA    ++ RT+A
Sbjct:  921 PTVFGLWGQGFGSFGNARSDGNAAGFDRQISGFALGADLRLESGLTLGLVGGYTAASLDTTGRLQSATIESGYGGVYGGYAVGPVSLRLGAIYADNSIRTRRTIA 1025          
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Match: UPI001FBB0EB3 (autotransporter domain-containing protein n=1 Tax=Methylobacterium sp. J-030 TaxID=2836627 RepID=UPI001FBB0EB3)

HSP 1 Score: 52.8 bits (125), Expect = 8.590e-5
Identity = 67/213 (31.46%), Postives = 85/213 (39.91%), Query Frame = 1
Query:    1 AQSARLYTAINALADDDITVALESIAGTSHAGTIRALGQGQRAANQLITQRLDAVAGGFASLRGG--GAGLLAGSALGLGVAPGPARH----------------GAWLRGFGGAGNVDVGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQ-----GRPFAEVRTDAWSLGG-YGRWRDGPWSLDAIASYARQQFKSIRTLALG 567
            A S RLY A       +   A  ++AG  HAGT+ A  +      + +  RL          R G  G GL  GS      A  P R                 G W +GFG  G  D GG       Q  G A G DVRL +G+  G+VG ++E++LD      G   AE  T     GG YG    GP SL   A YA    ++ R +  G
Sbjct:   69 AGSGRLYDAAAGFTATEAGSAFRALAGDIHAGTVSAAYETAFFVREAVLDRL----------RWGQPGTGLDYGSLPASYTADLPGRQPVVANVPVRTLDPQVFGLWGQGFGSFGTADGGGNAFDLDRQIAGFAVGADVRLPSGLRFGVVGGYTEASLDSAVRTGGVSRAESATLKSGFGGVYGGTELGPLSLRLGALYADTDARTRRAVLYG 271          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110047.2097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI001EDD230F1.740e-637.50autotransporter domain-containing protein n=1 Tax=... [more]
UPI001EE3696A7.900e-635.58autotransporter domain-containing protein n=3 Tax=... [more]
A0A1I3DNI3_9PSED1.740e-532.20Outer membrane autotransporter barrel domain-conta... [more]
A0A519YZD7_9BURK2.370e-531.05Autotransporter outer membrane beta-barrel domain-... [more]
UPI001FBAE20F3.380e-538.05autotransporter domain-containing protein n=1 Tax=... [more]
A0A1H0H0F4_9HYPH3.560e-538.05Outer membrane autotransporter barrel domain-conta... [more]
A0A509EEK6_9HYPH6.590e-534.29Extracellular serine protease n=2 Tax=Methylobacte... [more]
UPI001FBB0EB38.590e-531.46autotransporter domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110047contigM-pyrifera_M_contig110047:1..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.1264172-CDS-M-pyrifera_M_contig110047:0..5881622815611.1264172-CDS-M-pyrifera_M_contig110047:0..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110047 1..588 -
1692277486.6477232-CDS-M-pyrifera_M_contig110047:0..5881692277486.6477232-CDS-M-pyrifera_M_contig110047:0..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110047 1..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110047.2097.1prot_M-pyrifera_M_contig110047.2097.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110047 1..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110047.2097.1

>prot_M-pyrifera_M_contig110047.2097.1 ID=prot_M-pyrifera_M_contig110047.2097.1|Name=mRNA_M-pyrifera_M_contig110047.2097.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=196bp
AQSARLYTAINALADDDITVALESIAGTSHAGTIRALGQGQRAANQLITQ
RLDAVAGGFASLRGGGAGLLAGSALGLGVAPGPARHGAWLRGFGGAGNVD
VGGGFDAQSLQFGGLAAGYDVRLNAGMSIGLVGIFSESTLDQGRPFAEVR
TDAWSLGGYGRWRDGPWSLDAIASYARQQFKSIRTLALGAGAGDVS
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mRNA from alignment at M-pyrifera_M_contig110047:1..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110047.2097.1 ID=mRNA_M-pyrifera_M_contig110047.2097.1|Name=mRNA_M-pyrifera_M_contig110047.2097.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig110047:1..588- (Macrocystis pyrifera P11B4 male)
GCACAATCCGCACGCCTGTACACGGCGATCAACGCGCTTGCCGACGACGA CATCACCGTCGCGCTGGAGTCGATCGCAGGCACGAGCCACGCGGGGACGA TCCGCGCGCTCGGTCAGGGTCAGCGCGCCGCGAACCAGTTGATTACGCAA CGCCTCGATGCGGTCGCGGGCGGATTCGCATCCTTGCGTGGCGGCGGCGC CGGTTTGCTCGCCGGTTCCGCACTCGGACTCGGGGTGGCACCGGGTCCGG CCCGTCACGGCGCGTGGTTACGTGGCTTTGGGGGCGCCGGCAACGTCGAT GTCGGTGGCGGTTTCGACGCTCAGTCCCTGCAGTTCGGCGGACTAGCGGC AGGCTACGATGTCCGTCTGAACGCGGGCATGAGCATCGGGCTGGTCGGTA TTTTCAGCGAGAGTACACTTGACCAGGGGCGACCGTTCGCCGAGGTGCGC ACCGATGCGTGGTCACTCGGCGGCTACGGTCGCTGGCGCGATGGCCCGTG GTCGCTCGATGCGATCGCGAGTTACGCGCGGCAGCAGTTCAAGTCGATCC GTACGCTGGCACTCGGGGCGGGCGCGGGGGATGTGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110047:1..588-

>mRNA_M-pyrifera_M_contig110047.2097.1 ID=mRNA_M-pyrifera_M_contig110047.2097.1|Name=mRNA_M-pyrifera_M_contig110047.2097.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1176bp|location=Sequence derived from alignment at M-pyrifera_M_contig110047:1..588- (Macrocystis pyrifera P11B4 male)
GCACAATCCGCACGCCTGTACACGGCGATCAACGCGCTTGCCGACGACGA
CATCACCGTCGCGCTGGAGTCGATCGCAGGCACGAGCCACGCGGGGACGA
TCCGCGCGCTCGGTCAGGGTCAGCGCGCCGCGAACCAGTTGATTACGCAA
CGCCTCGATGCGGTCGCGGGCGGATTCGCATCCTTGCGTGGCGGCGGCGC
CGGTTTGCTCGCCGGTTCCGCACTCGGACTCGGGGTGGCACCGGGTCCGG
CCCGTCACGGCGCGTGGTTACGTGGCTTTGGGGGCGCCGGCAACGTCGAT
GTCGGTGGCGGTTTCGACGCTCAGTCCCTGCAGTTCGGCGGACTAGCGGC
AGGCTACGATGTCCGTCTGAACGCGGGCATGAGCATCGGGCTGGTCGGTA
TTTTCAGCGAGAGTACACTTGACCAGGGGCGACCGTTCGCCGAGGTGCGC
ACCGATGCGTGGTCACTCGGCGGCTACGGTCGCTGGCGCGATGGCCCGTG
GTCGCTCGATGCGATCGCGAGTTACGCGCGGCAGCAGTTCAAGTCGATCC
GTACGCTGGCACTCGGGGCGGGCGCGGGGGATGTGTCCGCACAATCCGCA
CGCCTGTACACGGCGATCAACGCGCTTGCCGACGACGACATCACCGTCGC
GCTGGAGTCGATCGCAGGCACGAGCCACGCGGGGACGATCCGCGCGCTCG
GTCAGGGTCAGCGCGCCGCGAACCAGTTGATTACGCAACGCCTCGATGCG
GTCGCGGGCGGATTCGCATCCTTGCGTGGCGGCGGCGCCGGTTTGCTCGC
CGGTTCCGCACTCGGACTCGGGGTGGCACCGGGTCCGGCCCGTCACGGCG
CGTGGTTACGTGGCTTTGGGGGCGCCGGCAACGTCGATGTCGGTGGCGGT
TTCGACGCTCAGTCCCTGCAGTTCGGCGGACTAGCGGCAGGCTACGATGT
CCGTCTGAACGCGGGCATGAGCATCGGGCTGGTCGGTATTTTCAGCGAGA
GTACACTTGACCAGGGGCGACCGTTCGCCGAGGTGCGCACCGATGCGTGG
TCACTCGGCGGCTACGGTCGCTGGCGCGATGGCCCGTGGTCGCTCGATGC
GATCGCGAGTTACGCGCGGCAGCAGTTCAAGTCGATCCGTACGCTGGCAC
TCGGGGCGGGCGCGGGGGATGTGTCC
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