mRNA_M-pyrifera_M_contig11003.2094.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11003.2094.1
Unique NamemRNA_M-pyrifera_M_contig11003.2094.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11003.2094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11003contigM-pyrifera_M_contig11003:1880..2442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size563
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11003.2094.1prot_M-pyrifera_M_contig11003.2094.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11003 1943..2326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.8788304-UTR-M-pyrifera_M_contig11003:1879..19421622815610.8788304-UTR-M-pyrifera_M_contig11003:1879..1942Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11003 1880..1942 +
1692277486.526578-UTR-M-pyrifera_M_contig11003:1879..19421692277486.526578-UTR-M-pyrifera_M_contig11003:1879..1942Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11003 1880..1942 +
1622815610.9137979-UTR-M-pyrifera_M_contig11003:2326..24421622815610.9137979-UTR-M-pyrifera_M_contig11003:2326..2442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11003 2327..2442 +
1692277486.5512185-UTR-M-pyrifera_M_contig11003:2326..24421692277486.5512185-UTR-M-pyrifera_M_contig11003:2326..2442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11003 2327..2442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.8994005-CDS-M-pyrifera_M_contig11003:1942..23261622815610.8994005-CDS-M-pyrifera_M_contig11003:1942..2326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11003 1943..2326 +
1692277486.541816-CDS-M-pyrifera_M_contig11003:1942..23261692277486.541816-CDS-M-pyrifera_M_contig11003:1942..2326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11003 1943..2326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11003.2094.1

>prot_M-pyrifera_M_contig11003.2094.1 ID=prot_M-pyrifera_M_contig11003.2094.1|Name=mRNA_M-pyrifera_M_contig11003.2094.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
MRSKTPSRGLSWVFSSLSPRCCGGFGVVFCLFVFSWDEPFRRFVKTVSCK
RLHNGVFLPLRVRGASVGRKNTKKTNGHRLFARDLFRVRREREAGQKVGG
FSRKIPGRFLVAVTTDPSDIKSSTACR*
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mRNA from alignment at M-pyrifera_M_contig11003:1880..2442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11003.2094.1 ID=mRNA_M-pyrifera_M_contig11003.2094.1|Name=mRNA_M-pyrifera_M_contig11003.2094.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=563bp|location=Sequence derived from alignment at M-pyrifera_M_contig11003:1880..2442+ (Macrocystis pyrifera P11B4 male)
GGCTGCTGTGGGTCGTCGCTTCGGTTTTTTTTTTGTTCTTGGTTCCTTCT
TGCTTTTTTTTGTATGAGATCGAAAACGCCTTCCCGTGGGTTGAGTTGGG
TGTTTTCTTCTTTGTCACCACGCTGTTGTGGGGGCTTCGGAGTTGTTTTT
TGTTTGTTTGTTTTTTCATGGGATGAACCGTTTCGCCGTTTCGTGAAAAC
GGTTTCATGCAAACGGTTACATAACGGCGTTTTTCTCCCTTTACGTGTAC
GGGGTGCCTCGGTTGGCCGGAAAAATACGAAGAAAACAAACGGACACAGG
CTCTTCGCGCGAGACCTGTTTCGCGTAAGAAGAGAAAGAGAGGCAGGGCA
GAAAGTGGGTGGTTTCTCTCGGAAGATTCCAGGAAGATTCCTCGTAGCGG
TAACGACTGATCCATCAGACATCAAATCAAGCACTGCATGCCGCTGACGG
AGGGGGTGGCTCTTTTCTTTTTTTGGTCGTCCTTAACCGGAAACGGCTTT
ACGTACGATGCACCGTTTTTTTTTTTTTGTAATTGCCTCGGTGTCGACGT
TTGATTGACAAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11003:1880..2442+

>mRNA_M-pyrifera_M_contig11003.2094.1 ID=mRNA_M-pyrifera_M_contig11003.2094.1|Name=mRNA_M-pyrifera_M_contig11003.2094.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig11003:1880..2442+ (Macrocystis pyrifera P11B4 male)
ATGAGATCGAAAACGCCTTCCCGTGGGTTGAGTTGGGTGTTTTCTTCTTT
GTCACCACGCTGTTGTGGGGGCTTCGGAGTTGTTTTTTGTTTGTTTGTTT
TTTCATGGGATGAACCGTTTCGCCGTTTCGTGAAAACGGTTTCATGCAAA
CGGTTACATAACGGCGTTTTTCTCCCTTTACGTGTACGGGGTGCCTCGGT
TGGCCGGAAAAATACGAAGAAAACAAACGGACACAGGCTCTTCGCGCGAG
ACCTGTTTCGCGTAAGAAGAGAAAGAGAGGCAGGGCAGAAAGTGGGTGGT
TTCTCTCGGAAGATTCCAGGAAGATTCCTCGTAGCGGTAACGACTGATCC
ATCAGACATCAAATCAAGCACTGCATGCCGCTGAATGAGATCGAAAACGC
CTTCCCGTGGGTTGAGTTGGGTGTTTTCTTCTTTGTCACCACGCTGTTGT
GGGGGCTTCGGAGTTGTTTTTTGTTTGTTTGTTTTTTCATGGGATGAACC
GTTTCGCCGTTTCGTGAAAACGGTTTCATGCAAACGGTTACATAACGGCG
TTTTTCTCCCTTTACGTGTACGGGGTGCCTCGGTTGGCCGGAAAAATACG
AAGAAAACAAACGGACACAGGCTCTTCGCGCGAGACCTGTTTCGCGTAAG
AAGAGAAAGAGAGGCAGGGCAGAAAGTGGGTGGTTTCTCTCGGAAGATTC
CAGGAAGATTCCTCGTAGCGGTAACGACTGATCCATCAGACATCAAATCA
AGCACTGCATGCCGCTGA
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