mRNA_M-pyrifera_M_contig109951.2077.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109951.2077.1
Unique NamemRNA_M-pyrifera_M_contig109951.2077.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A1W9RG39_9BACT (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=candidate division KSB1 bacterium 4484_87 TaxID=1970772 RepID=A0A1W9RG39_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 1.450e-12
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 PDLFVSPTSLSFGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSISSNG 246
            PDL V+PTSL FGS+ T K+F+++NDG GTLS++++DN+ WISV+P                  + L+ GSY+G V+I+SNG
Sbjct:  605 PDLSVTPTSLDFGSNETIKTFSLKNDGSGTLSWTITDNKDWISVTPTQGSTTDETEAISVTVDRSNLAAGSYTGQVTITSNG 686          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A7C0XXW9_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C0XXW9_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 2.280e-11
Identity = 61/200 (30.50%), Postives = 95/200 (47.50%), Query Frame = 1
Query:    1 PDLFVSPTSLSFGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSISSNGXXXXXXXXXXVPSQSGTVTVELVSPP------------SSVQVGDLVDVQVRIKYDGDN--DGPWQVTDLDLRDDDI--SPVYETIRAVNNPLTISN--TGQWYNYTFSNVR--LSDW 540
            P L  S +SL FG+S+T+K+F + N GGGTLSY++SD+++WISVSP                  +GLS G Y+GTV+I  N             +Q+ TV++++V+ P            ++V +   +        DGD+  +  WQV D       +  S  Y  + +V  P  + N  T  W+   + + R   SDW
Sbjct:  518 PALCKSTSSLDFGTSATTKTFEVWNCGGGTLSYTISDDRTWISVSPTSGSSTGEHDTITVTVNRSGLSPGHYTGTVTIDPNYGA----------NQTVTVSMDVVNNPPNTPTNLSPCGVTNVSLTPTLQASAFSDPDGDSFANSQWQVDDSSSFPSPVWDSGTYSPVTSVTVPSGVLNYSTTYWWRVRYKDGRGSWSDW 707          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A2M7UD83_9BACT (Fibronectin type-III domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium CG_4_10_14_0_2_um_filter_48_9 TaxID=1975522 RepID=A0A2M7UD83_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 4.800e-10
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 1
Query:    1 PDLFVSPTSLSFGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSISSNGXXXXXXXXXXVPSQSGTVTVELVSPPSSVQVGDLVDVQ-VRIKYDGDNDGPWQVTD 411
            P L V PT+L FGS+S +++F + N G G L+++++DN+SWISVSP                   GLS G+Y GT+++SS+G          +P +       L   P+ ++ G  V  Q   I   G     W V+D
Sbjct:  213 PQLSVFPTTLDFGSNSNTEAFNVTNTGTGMLTWNITDNKSWISVSPQSGTTQTESDEITINIDRLGLSPGTYMGTITVSSDGGNQDVIVTTNIPDEPS-----LSVTPTVLEFGSTVTAQSFTIANAGSGTLNWDVSD 345          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A7X7IYI1_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7IYI1_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 7.620e-9
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    1 PDLFVSPTSLS----FGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSISSNGXXXXXXXXXXVPSQSGTVTVELVSPPSSVQVGD 345
            P + +SPTSLS     GS+++S++FT+RN G G+LSYS+SDNQ+W+S SP                  +GLS G+Y+ T+++S               +   TV V L   PS + V +
Sbjct:  687 PTIALSPTSLSPSCTQGSNASSQTFTVRNSGTGSLSYSISDNQTWLSESPTSGTSTGEQDTITVTYSTSGLSAGTYNATITVSD----------PNASNNPQTVAVTLTVNPSKITVAE 795          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A7X7J3K0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7J3K0_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 3.180e-8
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    1 PDLFVSPTSLS----FGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSISSNGXXXXXXXXXXVPSQSGTVTVELVSPPSSVQVGD 345
            P +  SP++LS     GS+++S++FT++N GGGTLSYS+SDN +W+S SP                  +GLS G+Y+GT++IS               +   T+ V L   PS + V +
Sbjct:  284 PTIGRSPSTLSPSCTQGSNASSQTFTVQNTGGGTLSYSISDNVTWLSCSPTSGTSTGEADTITVTYSTSGLSAGTYNGTITISD----------PNATNNPQTIAVTLTVNPSKITVAE 392          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A0K2GD83_NITMO (Fibronectin type-III domain-containing protein n=1 Tax=Nitrospira moscoviensis TaxID=42253 RepID=A0A0K2GD83_NITMO)

HSP 1 Score: 62.0 bits (149), Expect = 6.090e-8
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 PDLFVSPTSLSF-----GSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSISSNG 246
            P +  SPTSL+F     GS+   KSF I N GGGTL++S+SDN +W+SV+P                  +GL+ G+Y+GT++I++ G
Sbjct:  456 PSIGFSPTSLTFSATAGGSNPAGKSFIITNPGGGTLTWSISDNAAWLSVTPTSGTTTTETDTLTASVNLSGLAVGTYNGTITITAAG 542          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A7X7FQG1_9BACT (DUF2961 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7FQG1_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 6.780e-8
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 PDLFVSPTSLS----FGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSIS 237
            P +  SP++LS     GS++ S++FT++N GGGTLSY++SDN +W+S SP                  +GLS G+Y+GT++IS
Sbjct: 1052 PTITRSPSTLSPSCNHGSNAASQNFTVQNTGGGTLSYAISDNVTWLSCSPTSGTSTGEADTITVTYSTSGLSAGTYNGTITIS 1134          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A3N9MXW4_9BACT (Uncharacterized protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3N9MXW4_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.090e-7
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 PDLFVSPTSLSFGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXX-NGLSEGSYSGTVSISSN 243
            P + VSP SL FG+++TS  FTI N GGGTL++++ D+QSW+SVS                    N LS G+YSG ++I+ N
Sbjct:  260 PVMSVSPASLDFGTTTTSMGFTISNTGGGTLNWTIPDDQSWLSVSQTSGSTTAGNTSNLTADVRRNSLSAGNYSGAITITPN 341          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: A0A7X7FJ23_9BACT (BACON domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7FJ23_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 2.140e-7
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 PDLFVSPTSLS----FGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSIS 237
            P + +SPT+LS     G+++TS++FT+ N G GTLSY++SDNQ+W+S SP                  +GLS G+Y+ T+++S
Sbjct:  702 PAISLSPTTLSPSCAQGNNATSQTFTVTNSGIGTLSYTISDNQTWLSCSPTSGTSTGETDTITVSYSTSGLSAGTYNATITVS 784          
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Match: UPI0014302C2C (PKD domain-containing protein n=1 Tax=Maribellus sediminis TaxID=2696285 RepID=UPI0014302C2C)

HSP 1 Score: 59.7 bits (143), Expect = 3.740e-7
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 PDLFVSPTSLSFGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPXXXXXXXXXXXXXXXXXXNGLSEGSYSGTVSISSNG 246
            P L VSP SL F S +T K F I N G GTLS+SVS+N +W++VS                   +GLS G+YSG ++I+S+G
Sbjct:  498 PLLNVSPNSLDFDSITTQKIFEITNAGSGTLSWSVSENLNWLTVSLSSGSTTTETNVITVTVNRSGLSAGTYSGVIAITSDG 579          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109951.2077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A1W9RG39_9BACT1.450e-1246.34Fibronectin type-III domain-containing protein (Fr... [more]
A0A7C0XXW9_9CHLR2.280e-1130.50Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A2M7UD83_9BACT4.800e-1032.61Fibronectin type-III domain-containing protein n=1... [more]
A0A7X7IYI1_9BACT7.620e-935.29Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A7X7J3K0_9BACT3.180e-834.45Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A0K2GD83_NITMO6.090e-840.23Fibronectin type-III domain-containing protein n=1... [more]
A0A7X7FQG1_9BACT6.780e-840.96DUF2961 domain-containing protein n=1 Tax=Planctom... [more]
A0A3N9MXW4_9BACT1.090e-742.68Uncharacterized protein n=1 Tax=Calditrichaeota ba... [more]
A0A7X7FJ23_9BACT2.140e-739.76BACON domain-containing protein (Fragment) n=1 Tax... [more]
UPI0014302C2C3.740e-743.90PKD domain-containing protein n=1 Tax=Maribellus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109951contigM-pyrifera_M_contig109951:45..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.9450333-CDS-M-pyrifera_M_contig109951:44..6021622815609.9450333-CDS-M-pyrifera_M_contig109951:44..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109951 45..602 +
1692277486.1641126-CDS-M-pyrifera_M_contig109951:44..6021692277486.1641126-CDS-M-pyrifera_M_contig109951:44..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109951 45..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109951.2077.1prot_M-pyrifera_M_contig109951.2077.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109951 45..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109951.2077.1

>prot_M-pyrifera_M_contig109951.2077.1 ID=prot_M-pyrifera_M_contig109951.2077.1|Name=mRNA_M-pyrifera_M_contig109951.2077.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
PDLFVSPTSLSFGSSSTSKSFTIRNDGGGTLSYSVSDNQSWISVSPSSGS
STGESDSVTVTINRNGLSEGSYSGTVSISSNGGSASVAVSMSVPSQSGTV
TVELVSPPSSVQVGDLVDVQVRIKYDGDNDGPWQVTDLDLRDDDISPVYE
TIRAVNNPLTISNTGQWYNYTFSNVRLSDWDDGGNG
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mRNA from alignment at M-pyrifera_M_contig109951:45..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109951.2077.1 ID=mRNA_M-pyrifera_M_contig109951.2077.1|Name=mRNA_M-pyrifera_M_contig109951.2077.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig109951:45..602+ (Macrocystis pyrifera P11B4 male)
CCCGACTTGTTCGTTTCTCCGACCAGCTTAAGTTTTGGGAGTTCTTCGAC CAGTAAAAGTTTCACAATACGTAATGACGGTGGCGGCACGCTCTCTTACA GTGTGAGTGATAACCAAAGCTGGATCTCCGTCAGCCCCTCTAGCGGAAGC TCGACGGGTGAATCCGACTCGGTCACGGTGACGATTAACCGTAACGGCCT AAGTGAAGGCAGTTACAGCGGAACTGTAAGCATTAGTTCAAACGGGGGTT CGGCCTCGGTCGCCGTTTCGATGTCCGTGCCGTCGCAATCGGGCACCGTA ACCGTGGAGTTGGTATCGCCGCCAAGCTCGGTTCAGGTGGGTGATTTGGT AGACGTCCAAGTCCGTATCAAGTACGACGGCGACAACGACGGACCCTGGC AAGTCACAGATCTCGACTTGCGTGACGATGACATTTCCCCCGTATACGAA ACTATTCGGGCGGTGAATAACCCTCTGACGATATCGAATACGGGCCAATG GTACAACTACACTTTCTCCAATGTTCGTCTTAGTGATTGGGATGATGGCG GCAATGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109951:45..602+

>mRNA_M-pyrifera_M_contig109951.2077.1 ID=mRNA_M-pyrifera_M_contig109951.2077.1|Name=mRNA_M-pyrifera_M_contig109951.2077.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig109951:45..602+ (Macrocystis pyrifera P11B4 male)
CCCGACTTGTTCGTTTCTCCGACCAGCTTAAGTTTTGGGAGTTCTTCGAC
CAGTAAAAGTTTCACAATACGTAATGACGGTGGCGGCACGCTCTCTTACA
GTGTGAGTGATAACCAAAGCTGGATCTCCGTCAGCCCCTCTAGCGGAAGC
TCGACGGGTGAATCCGACTCGGTCACGGTGACGATTAACCGTAACGGCCT
AAGTGAAGGCAGTTACAGCGGAACTGTAAGCATTAGTTCAAACGGGGGTT
CGGCCTCGGTCGCCGTTTCGATGTCCGTGCCGTCGCAATCGGGCACCGTA
ACCGTGGAGTTGGTATCGCCGCCAAGCTCGGTTCAGGTGGGTGATTTGGT
AGACGTCCAAGTCCGTATCAAGTACGACGGCGACAACGACGGACCCTGGC
AAGTCACAGATCTCGACTTGCGTGACGATGACATTTCCCCCGTATACGAA
ACTATTCGGGCGGTGAATAACCCTCTGACGATATCGAATACGGGCCAATG
GTACAACTACACTTTCTCCAATGTTCGTCTTAGTGATTGGGATGATGGCG
GCAATGGCCCCGACTTGTTCGTTTCTCCGACCAGCTTAAGTTTTGGGAGT
TCTTCGACCAGTAAAAGTTTCACAATACGTAATGACGGTGGCGGCACGCT
CTCTTACAGTGTGAGTGATAACCAAAGCTGGATCTCCGTCAGCCCCTCTA
GCGGAAGCTCGACGGGTGAATCCGACTCGGTCACGGTGACGATTAACCGT
AACGGCCTAAGTGAAGGCAGTTACAGCGGAACTGTAAGCATTAGTTCAAA
CGGGGGTTCGGCCTCGGTCGCCGTTTCGATGTCCGTGCCGTCGCAATCGG
GCACCGTAACCGTGGAGTTGGTATCGCCGCCAAGCTCGGTTCAGGTGGGT
GATTTGGTAGACGTCCAAGTCCGTATCAAGTACGACGGCGACAACGACGG
ACCCTGGCAAGTCACAGATCTCGACTTGCGTGACGATGACATTTCCCCCG
TATACGAAACTATTCGGGCGGTGAATAACCCTCTGACGATATCGAATACG
GGCCAATGGTACAACTACACTTTCTCCAATGTTCGTCTTAGTGATTGGGA
TGATGGCGGCAATGGC
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