mRNA_M-pyrifera_M_contig109939.2075.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109939.2075.1
Unique NamemRNA_M-pyrifera_M_contig109939.2075.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109939.2075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109939contigM-pyrifera_M_contig109939:27..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.8745751-CDS-M-pyrifera_M_contig109939:26..6021622815609.8745751-CDS-M-pyrifera_M_contig109939:26..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109939 27..602 +
1692277486.1364584-CDS-M-pyrifera_M_contig109939:26..6021692277486.1364584-CDS-M-pyrifera_M_contig109939:26..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109939 27..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109939.2075.1prot_M-pyrifera_M_contig109939.2075.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109939 27..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109939.2075.1

>prot_M-pyrifera_M_contig109939.2075.1 ID=prot_M-pyrifera_M_contig109939.2075.1|Name=mRNA_M-pyrifera_M_contig109939.2075.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
FAGAAATLERTASLLESDHGRTRQWCALMIEAGRSRLAGGDIAGDGILRE
VIEIAATAGDTEMAASATLEWCRLGMSAGAGSVDDERLEVIDGLLERAPT
ARERAQLGAAAAMVLSLASQPDTLRSRYEQAVSDAEGTDDDDLLGDVLPL
AYMSTPLHEDIDRRIRTGRRLQQIGAELTRPDATWEGLQLTY
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mRNA from alignment at M-pyrifera_M_contig109939:27..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109939.2075.1 ID=mRNA_M-pyrifera_M_contig109939.2075.1|Name=mRNA_M-pyrifera_M_contig109939.2075.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig109939:27..602+ (Macrocystis pyrifera P11B4 male)
TTCGCCGGCGCCGCTGCCACGCTCGAACGCACGGCTTCCCTCCTCGAGTC
CGATCACGGTCGGACACGGCAGTGGTGTGCCCTGATGATCGAGGCCGGTC
GTTCTCGTCTCGCCGGCGGCGACATCGCCGGCGACGGCATCTTGCGGGAG
GTGATCGAGATCGCTGCCACAGCCGGCGACACCGAGATGGCCGCATCGGC
CACGCTCGAATGGTGCCGGCTCGGGATGTCGGCCGGCGCCGGCTCGGTCG
ACGACGAGCGTCTGGAGGTCATCGACGGACTGCTCGAGCGGGCGCCGACG
GCGCGTGAGCGGGCACAACTCGGCGCAGCGGCCGCCATGGTGCTGAGCCT
CGCCAGCCAGCCGGACACGCTCCGATCCCGGTACGAACAGGCGGTCAGTG
ATGCCGAGGGCACCGACGACGACGACCTCCTCGGCGACGTGCTCCCGCTC
GCATACATGTCGACGCCGCTGCACGAAGACATCGACCGCCGCATCCGCAC
GGGACGACGCCTGCAGCAGATCGGCGCCGAACTCACCCGTCCGGACGCGA
CATGGGAAGGTCTGCAACTCACCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109939:27..602+

>mRNA_M-pyrifera_M_contig109939.2075.1 ID=mRNA_M-pyrifera_M_contig109939.2075.1|Name=mRNA_M-pyrifera_M_contig109939.2075.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig109939:27..602+ (Macrocystis pyrifera P11B4 male)
TTCGCCGGCGCCGCTGCCACGCTCGAACGCACGGCTTCCCTCCTCGAGTC
CGATCACGGTCGGACACGGCAGTGGTGTGCCCTGATGATCGAGGCCGGTC
GTTCTCGTCTCGCCGGCGGCGACATCGCCGGCGACGGCATCTTGCGGGAG
GTGATCGAGATCGCTGCCACAGCCGGCGACACCGAGATGGCCGCATCGGC
CACGCTCGAATGGTGCCGGCTCGGGATGTCGGCCGGCGCCGGCTCGGTCG
ACGACGAGCGTCTGGAGGTCATCGACGGACTGCTCGAGCGGGCGCCGACG
GCGCGTGAGCGGGCACAACTCGGCGCAGCGGCCGCCATGGTGCTGAGCCT
CGCCAGCCAGCCGGACACGCTCCGATCCCGGTACGAACAGGCGGTCAGTG
ATGCCGAGGGCACCGACGACGACGACCTCCTCGGCGACGTGCTCCCGCTC
GCATACATGTCGACGCCGCTGCACGAAGACATCGACCGCCGCATCCGCAC
GGGACGACGCCTGCAGCAGATCGGCGCCGAACTCACCCGTCCGGACGCGA
CATGGGAAGGTCTGCAACTCACCTACTTCGCCGGCGCCGCTGCCACGCTC
GAACGCACGGCTTCCCTCCTCGAGTCCGATCACGGTCGGACACGGCAGTG
GTGTGCCCTGATGATCGAGGCCGGTCGTTCTCGTCTCGCCGGCGGCGACA
TCGCCGGCGACGGCATCTTGCGGGAGGTGATCGAGATCGCTGCCACAGCC
GGCGACACCGAGATGGCCGCATCGGCCACGCTCGAATGGTGCCGGCTCGG
GATGTCGGCCGGCGCCGGCTCGGTCGACGACGAGCGTCTGGAGGTCATCG
ACGGACTGCTCGAGCGGGCGCCGACGGCGCGTGAGCGGGCACAACTCGGC
GCAGCGGCCGCCATGGTGCTGAGCCTCGCCAGCCAGCCGGACACGCTCCG
ATCCCGGTACGAACAGGCGGTCAGTGATGCCGAGGGCACCGACGACGACG
ACCTCCTCGGCGACGTGCTCCCGCTCGCATACATGTCGACGCCGCTGCAC
GAAGACATCGACCGCCGCATCCGCACGGGACGACGCCTGCAGCAGATCGG
CGCCGAACTCACCCGTCCGGACGCGACATGGGAAGGTCTGCAACTCACCT
AC
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