mRNA_M-pyrifera_M_contig109911.2070.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109911.2070.1
Unique NamemRNA_M-pyrifera_M_contig109911.2070.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: A0A7S4HJL1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HJL1_9EUKA)

HSP 1 Score: 302 bits (774), Expect = 5.610e-98
Identity = 150/200 (75.00%), Postives = 175/200 (87.50%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPEGSKALVPNSGKLIEVDH 600
            MLGYLAFSGVFLTWLRRPTG++T++EQRLEGEFRFVNSRLITN+EEIAFY+GN KE  V+ ++F R++ L+RK+ +FRF MGVVDTM+AKYLAT+VGFYVVSRPFL+ A  RH+  ++DEIMQDYY+SGRMLMNLA AVGRLVLAGRELTRLAGFT RVTELMDVLDDLN G Y RTMV++   +  L P SG+LIEVDH
Sbjct:  101 MLGYLAFSGVFLTWLRRPTGRYTILEQRLEGEFRFVNSRLITNSEEIAFYQGNGKERQVIDSTFARMVKLLRKSMKFRFFMGVVDTMVAKYLATVVGFYVVSRPFLNPASTRHVGFSKDEIMQDYYKSGRMLMNLATAVGRLVLAGRELTRLAGFTVRVTELMDVLDDLNKGKYVRTMVNKDTSASNLKPGSGQLIEVDH 300
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: A0A8K1FFC8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFC8_PYTOL)

HSP 1 Score: 261 bits (668), Expect = 1.330e-80
Identity = 129/213 (60.56%), Postives = 166/213 (77.93%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPE-------------GSKALVPNSGKLIEVDH 600
            MLGYL FSG+FLTWLR+PTG+FT+ EQ++EG FRF+N+RLIT++EEIAFY GN +E+ +L  SF RL+ LVR++QQFRFS+ V+D ++AKY AT+VG++VVSRPFLD  HPRHLNS+  E M+DY+RSG+ML+ L+ A+GRLVL+GRELTRLAGFTARVTE+MDVL DL+ G Y RTM+   E              S  L PN G+++  DH
Sbjct:  231 MLGYLVFSGMFLTWLRQPTGRFTIAEQKMEGNFRFMNARLITHSEEIAFYNGNVREKRILDQSFTRLIDLVRQSQQFRFSISVIDNIVAKYFATVVGYFVVSRPFLDKEHPRHLNSSYAERMEDYFRSGKMLIKLSEAMGRLVLSGRELTRLAGFTARVTEMMDVLTDLDEGRYQRTMLKDNEEDSESSPTAKASASSLGLYPNKGEMLYEDH 443
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: C3XY03_BRAFL (Uncharacterized protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3XY03_BRAFL)

HSP 1 Score: 259 bits (663), Expect = 7.470e-80
Identity = 130/205 (63.41%), Postives = 160/205 (78.05%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPEGSKA-----LVPNSGKLIEVDH 600
            MLGYL FSG+ LT LRRP GK TV EQR EGEFR+VNSRLITN+EEIAFY+GN++E+  +  SF++L+  +R    FRFSMG VD +IAKY+AT+VG+ VVSRPFLD+AHPRH +S   E+++DYY+SGRML+ +A A+GR+VLAGRE+TRLAGFTARVTELM VL DLN G Y RTMVS     +      L+P SG L+E DH
Sbjct:  240 MLGYLVFSGLILTRLRRPIGKMTVQEQRYEGEFRYVNSRLITNSEEIAFYQGNQREKATIELSFQKLIEHLRTFIVFRFSMGFVDNIIAKYVATVVGYLVVSRPFLDLAHPRHRHSTHSELLEDYYKSGRMLVKMAQAIGRIVLAGREMTRLAGFTARVTELMKVLGDLNKGKYERTMVSAQNRDRVVSEVPLIPGSGTLVEQDH 444
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: L8YAH0_TUPCH (ATP-binding cassette sub-family D member 3 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=L8YAH0_TUPCH)

HSP 1 Score: 248 bits (633), Expect = 4.660e-79
Identity = 121/206 (58.74%), Postives = 159/206 (77.18%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPEGS------KALVPNSGKLIEVDH 600
            M+ YL  SG+FLT LRRP GK T+ EQ+ EGE+R+VNSRLITN+EEIAFY GN++E+  + + FR+L+  +     FRFSMG +D++IAKYLAT+VG+ VVSRPFLD++HPRHL S   E+++DYY+SGRML+ ++ A+GR+VLAGRE+TRLAGFTAR+TELM VL DLN G Y RTMVSQ E          L+P +G++I  D+
Sbjct:  118 MMAYLVISGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLHNFILFRFSMGFIDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQERGIEGVQVMPLIPGAGEIINADN 323
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: A0A067C140_SAPPC (ABC transporter domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C140_SAPPC)

HSP 1 Score: 255 bits (652), Expect = 2.570e-78
Identity = 127/203 (62.56%), Postives = 165/203 (81.28%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVS-QPEGSKA--LVPNSGKLIEVDH 600
            ML YL  SG+FLTWLR+PTG+FT+ EQRLEG +R++N+RLIT+ EEIAFY GN++E  +L+ASF  L++L+R++QQFRFSM V+D++IAKY AT++GF +VSRPFLD+   RHLNS+  + MQDY+RSG+MLM L+ A+GRLVL+GRELTRLAGFT RV  ++ VLDDL+ G YTRTMV+  P+ + A  LVPNSG L   DH
Sbjct:  228 MLSYLVGSGMFLTWLRQPTGRFTIAEQRLEGAYRYINARLITHGEEIAFYNGNKREASILQASFDALVSLIRQSQQFRFSMSVIDSVIAKYFATVLGFVLVSRPFLDLNDARHLNSSHADRMQDYFRSGKMLMKLSEAMGRLVLSGRELTRLAGFTCRVAVMISVLDDLHNGKYTRTMVTPSPDDADAMALVPNSGTLEYADH 430
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: A0A8C7WRV7_9TELE (ATP-binding cassette, sub-family D (ALD), member 3b n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7WRV7_9TELE)

HSP 1 Score: 246 bits (627), Expect = 7.290e-78
Identity = 121/204 (59.31%), Postives = 162/204 (79.41%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPEG----SKALVPNSGKLIEVDH 600
            M+ YL  SG+FLT LRRP GK TV EQR EGE+R+VNSRLITN+EEIAFY GN +E+  + ++F++L+  +     FRFSMG VD++IAKY+AT+VG+ VVSRPFL+++HPRHL S+  ++++DYY+SGRML+ ++ A+GR+VLAGRE+TRL+GFTAR+TELM VL +LNAG Y RTMVSQ E     ++ LVP  G++I  DH
Sbjct:    1 MMSYLLISGLFLTRLRRPIGKMTVTEQRYEGEYRYVNSRLITNSEEIAFYNGNSREKQTIYSTFKKLVDHLHSFIFFRFSMGFVDSIIAKYIATVVGYLVVSRPFLNLSHPRHLQSSHSDLLEDYYQSGRMLLRMSQALGRIVLAGREMTRLSGFTARITELMMVLKELNAGKYERTMVSQQETDTTENRPLVPGRGQIIHRDH 204
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: UPI0012632949 (ATP-binding cassette sub-family D member 3 isoform X6 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=UPI0012632949)

HSP 1 Score: 250 bits (638), Expect = 7.780e-78
Identity = 122/203 (60.10%), Postives = 160/203 (78.82%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPEGSKA---LVPNSGKLIEVDH 600
            M+ YL  SG+FLT LRRP GK TV EQ+ EGE+R+VNSRLITN+EEIAFY GN++E+  + + FR+L+  +     FRFSMG +D +IAKYLAT+VG+ VVSRPFLD++HPRHL S+  E+++DYY+SGRML+ ++ A+GR+VLAGRE+TRLAGFTAR+TELM VL DLN G Y RTMVSQ E  +    L+P +G++I  D+
Sbjct:  233 MMAYLIVSGLFLTRLRRPIGKMTVTEQKFEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLHNFILFRFSMGFIDNIIAKYLATVVGYLVVSRPFLDLSHPRHLRSSHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGEQGIPLIPGAGEIINADN 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: A0A1W0A8M1_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8M1_9STRA)

HSP 1 Score: 262 bits (670), Expect = 1.290e-77
Identity = 127/202 (62.87%), Postives = 167/202 (82.67%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVS-QPEGSKA-LVPNSGKLIEVDH 600
            ML YL  SG+FLTWLR+PTG+FT+ EQRLEG +R++N+RLIT+ EEIAFY GN++E  ++++SF  L+ L+R++QQFRFSM V+D +IAKY AT++GF++VSRPFLD+  PRH NS   + MQDY+RSG+MLM L+ A+GRLVL+GRELTRLAGFT RV +++ VL+DL+AG YTRTMV+  PE + A LVPNSGKL+  DH
Sbjct:  966 MLSYLIGSGMFLTWLRQPTGRFTIAEQRLEGNYRYINARLITHGEEIAFYNGNKREASIIQSSFDSLVKLIRQSQQFRFSMSVIDNVIAKYFATVLGFFLVSRPFLDLNDPRHQNSTHADRMQDYFRSGKMLMKLSEAMGRLVLSGRELTRLAGFTCRVADMITVLEDLHAGKYTRTMVAPSPEDAHAPLVPNSGKLVYADH 1167
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: A0A668AMI9_9TELE (ATP binding cassette subfamily D member 3 n=3 Tax=Euteleosteomorpha TaxID=1489388 RepID=A0A668AMI9_9TELE)

HSP 1 Score: 253 bits (646), Expect = 1.940e-77
Identity = 125/201 (62.19%), Postives = 162/201 (80.60%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPEGSKA-LVPNSGKLIEVDH 600
            M+ YL  SG+FLT LRRP GK TV+EQR EGE+R+VNSRLITN+EEIAFY GN +E+  + A+F++L+  +     FRFSMG VD++IAKYLAT+VG+ VVSRPFL+++HPRHL S   E+++DYY+SGRML+ ++ A+GR+VLAGRE+TRL+GFTAR+TELM VL +LNAG Y RTMVSQ E  K  LVP SG++I  D+
Sbjct:  233 MMAYLLISGLFLTRLRRPIGKMTVVEQRYEGEYRYVNSRLITNSEEIAFYNGNIREKQTIHATFKKLVDHLHNFIFFRFSMGFVDSIIAKYLATVVGYLVVSRPFLNLSHPRHLQSTHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLSGFTARITELMKVLKELNAGKYERTMVSQQEKDKVILVPGSGRIINTDN 433
[Close]
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Match: A0A4U1F3S2_MONMO (ABC transmembrane type-1 domain-containing protein n=3 Tax=Laurasiatheria TaxID=314145 RepID=A0A4U1F3S2_MONMO)

HSP 1 Score: 248 bits (633), Expect = 2.050e-77
Identity = 121/203 (59.61%), Postives = 162/203 (79.80%), Query Frame = 1 
Query:    1 MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFYKGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYVVSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELTRLAGFTARVTELMDVLDDLNAGSYTRTMVSQPE-GSKA--LVPNSGKLIEVDH 600
            M+ YL  SG+FLT +RRP GK T+ EQ+LEGE+R+VNSRLITN+EEIAFY GN++E+  + + FR+L+  +     FRFSMG +D++IAKY AT+VG+ VVSRPFLD++HPRHL S+  E+++DYY+SGRML+ ++ A+GR+VLAGRE+TRLAGFTAR+TELM VL DLN G Y RTMVSQ E G++   L+P  G++I  D+
Sbjct:  233 MMAYLLVSGLFLTRIRRPIGKMTITEQKLEGEYRYVNSRLITNSEEIAFYNGNKREKQTIHSVFRKLVEHLHNFILFRFSMGFIDSIIAKYFATVVGYVVVSRPFLDLSHPRHLKSSHSELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNQGKYERTMVSQQEKGAQGIPLIPGVGEIINADN 435
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109911.2070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HJL1_9EUKA5.610e-9875.00Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8K1FFC8_PYTOL1.330e-8060.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
C3XY03_BRAFL7.470e-8063.41Uncharacterized protein n=4 Tax=Branchiostoma TaxI... [more]
L8YAH0_TUPCH4.660e-7958.74ATP-binding cassette sub-family D member 3 n=1 Tax... [more]
A0A067C140_SAPPC2.570e-7862.56ABC transporter domain-containing protein n=3 Tax=... [more]
A0A8C7WRV7_9TELE7.290e-7859.31ATP-binding cassette, sub-family D (ALD), member 3... [more]
UPI00126329497.780e-7860.10ATP-binding cassette sub-family D member 3 isoform... [more]
A0A1W0A8M1_9STRA1.290e-7762.87ATP-binding Cassette (ABC) Superfamily n=1 Tax=Thr... [more]
A0A668AMI9_9TELE1.940e-7762.19ATP binding cassette subfamily D member 3 n=3 Tax=... [more]
A0A4U1F3S2_MONMO2.050e-7759.61ABC transmembrane type-1 domain-containing protein... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109911contigM-pyrifera_M_contig109911:3..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score260.0
Seed ortholog evalue9.1e-67
Seed eggNOG ortholog7739.XP_002611047.1
Preferred nameABCD3
KEGG koko:K05677
KEGG TC3.A.1.203.1
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009987,GO:0010033,GO:0010876,GO:0014070,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016053,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019395,GO:0019752,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031903,GO:0031907,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0034440,GO:0035639,GO:0036094,GO:0042221,GO:0042493,GO:0042579,GO:0042623,GO:0042626,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043621,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0046942,GO:0046983,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0055114,GO:0070013,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0072330,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1901576
EggNOG free text desc.peroxisomal long-chain fatty acid import
EggNOG OGs3AETW@33154,3BFUM@33208,3CZQZ@33213,4893T@7711,COG4178@1,KOG0060@2759
COG Functional cat.I
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size600
Cds size600
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.6883733-CDS-M-pyrifera_M_contig109911:2..6021622815609.6883733-CDS-M-pyrifera_M_contig109911:2..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109911 3..602 -
1692277486.033014-CDS-M-pyrifera_M_contig109911:2..6021692277486.033014-CDS-M-pyrifera_M_contig109911:2..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109911 3..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109911.2070.1prot_M-pyrifera_M_contig109911.2070.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109911 3..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109911.2070.1

>prot_M-pyrifera_M_contig109911.2070.1 ID=prot_M-pyrifera_M_contig109911.2070.1|Name=mRNA_M-pyrifera_M_contig109911.2070.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
MLGYLAFSGVFLTWLRRPTGKFTVMEQRLEGEFRFVNSRLITNAEEIAFY
KGNRKEEGVLRASFRRLLTLVRKAQQFRFSMGVVDTMIAKYLATIVGFYV
VSRPFLDIAHPRHLNSNQDEIMQDYYRSGRMLMNLAGAVGRLVLAGRELT
RLAGFTARVTELMDVLDDLNAGSYTRTMVSQPEGSKALVPNSGKLIEVDH
back to top

mRNA from alignment at M-pyrifera_M_contig109911:3..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109911.2070.1 ID=mRNA_M-pyrifera_M_contig109911.2070.1|Name=mRNA_M-pyrifera_M_contig109911.2070.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig109911:3..602- (Macrocystis pyrifera P11B4 male)
ATGCTGGGCTACCTCGCCTTCTCTGGCGTGTTCCTGACGTGGCTGAGGCG
CCCCACCGGCAAGTTCACCGTCATGGAGCAGCGCCTGGAGGGCGAGTTCC
GCTTCGTCAACTCCCGCCTCATCACCAACGCCGAGGAGATTGCCTTCTAC
AAGGGCAACCGCAAGGAGGAGGGCGTGCTCCGCGCCAGCTTCCGCAGGCT
CCTCACCCTCGTGAGGAAGGCGCAGCAGTTCCGCTTCTCGATGGGAGTGG
TCGACACCATGATTGCCAAGTACCTGGCCACCATTGTGGGCTTCTACGTG
GTGAGCAGGCCCTTCTTGGACATTGCTCACCCGCGCCACCTCAACAGCAA
CCAGGACGAGATCATGCAGGACTACTACAGGAGTGGCCGCATGCTCATGA
ACCTGGCTGGCGCCGTTGGCCGCCTCGTGCTCGCCGGCCGCGAGCTGACG
CGCCTCGCCGGCTTCACTGCCCGTGTGACAGAGCTCATGGACGTCCTCGA
CGACCTGAACGCCGGCAGCTACACGCGCACCATGGTCTCGCAGCCCGAGG
GCAGCAAGGCCCTCGTGCCCAACAGCGGCAAGCTCATCGAGGTGGACCAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109911:3..602-

>mRNA_M-pyrifera_M_contig109911.2070.1 ID=mRNA_M-pyrifera_M_contig109911.2070.1|Name=mRNA_M-pyrifera_M_contig109911.2070.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig109911:3..602- (Macrocystis pyrifera P11B4 male)
ATGCTGGGCTACCTCGCCTTCTCTGGCGTGTTCCTGACGTGGCTGAGGCG
CCCCACCGGCAAGTTCACCGTCATGGAGCAGCGCCTGGAGGGCGAGTTCC
GCTTCGTCAACTCCCGCCTCATCACCAACGCCGAGGAGATTGCCTTCTAC
AAGGGCAACCGCAAGGAGGAGGGCGTGCTCCGCGCCAGCTTCCGCAGGCT
CCTCACCCTCGTGAGGAAGGCGCAGCAGTTCCGCTTCTCGATGGGAGTGG
TCGACACCATGATTGCCAAGTACCTGGCCACCATTGTGGGCTTCTACGTG
GTGAGCAGGCCCTTCTTGGACATTGCTCACCCGCGCCACCTCAACAGCAA
CCAGGACGAGATCATGCAGGACTACTACAGGAGTGGCCGCATGCTCATGA
ACCTGGCTGGCGCCGTTGGCCGCCTCGTGCTCGCCGGCCGCGAGCTGACG
CGCCTCGCCGGCTTCACTGCCCGTGTGACAGAGCTCATGGACGTCCTCGA
CGACCTGAACGCCGGCAGCTACACGCGCACCATGGTCTCGCAGCCCGAGG
GCAGCAAGGCCCTCGTGCCCAACAGCGGCAAGCTCATCGAGGTGGACCAT
ATGCTGGGCTACCTCGCCTTCTCTGGCGTGTTCCTGACGTGGCTGAGGCG
CCCCACCGGCAAGTTCACCGTCATGGAGCAGCGCCTGGAGGGCGAGTTCC
GCTTCGTCAACTCCCGCCTCATCACCAACGCCGAGGAGATTGCCTTCTAC
AAGGGCAACCGCAAGGAGGAGGGCGTGCTCCGCGCCAGCTTCCGCAGGCT
CCTCACCCTCGTGAGGAAGGCGCAGCAGTTCCGCTTCTCGATGGGAGTGG
TCGACACCATGATTGCCAAGTACCTGGCCACCATTGTGGGCTTCTACGTG
GTGAGCAGGCCCTTCTTGGACATTGCTCACCCGCGCCACCTCAACAGCAA
CCAGGACGAGATCATGCAGGACTACTACAGGAGTGGCCGCATGCTCATGA
ACCTGGCTGGCGCCGTTGGCCGCCTCGTGCTCGCCGGCCGCGAGCTGACG
CGCCTCGCCGGCTTCACTGCCCGTGTGACAGAGCTCATGGACGTCCTCGA
CGACCTGAACGCCGGCAGCTACACGCGCACCATGGTCTCGCAGCCCGAGG
GCAGCAAGGCCCTCGTGCCCAACAGCGGCAAGCTCATCGAGGTGGACCAT
back to top