mRNA_M-pyrifera_M_contig109902.2067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109902.2067.1
Unique NamemRNA_M-pyrifera_M_contig109902.2067.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2D8IS05_9GAMM (Integrase n=2 Tax=Haliea TaxID=475794 RepID=A0A2D8IS05_9GAMM)

HSP 1 Score: 290 bits (741), Expect = 3.430e-95
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR 417
            WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR
Sbjct:  291 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR 429          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2E3P3L8_9PROT (Integrase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E3P3L8_9PROT)

HSP 1 Score: 262 bits (669), Expect = 2.960e-84
Identity = 125/139 (89.93%), Postives = 129/139 (92.81%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR 417
            WTIP ERMKGGRDHKVPLC EAVDLLKSLPRDHDS +IFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHT+YPEEVCELALAHVNSDATR AYARSELI+KRRKLMADWERFCREGLP+  K   IR R
Sbjct:  291 WTIPCERMKGGRDHKVPLCREAVDLLKSLPRDHDSNLIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTTYPEEVCELALAHVNSDATRVAYARSELIDKRRKLMADWERFCREGLPATAKMKSIRGR 429          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A356VJ65_9GAMM (Integrase n=2 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A356VJ65_9GAMM)

HSP 1 Score: 197 bits (501), Expect = 3.080e-59
Identity = 96/136 (70.59%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKI 408
            WTIP ERMKGGR HKVPLC  AV LL+SL RD  SE +F +  G  LS+++++KV K +GH VT HGFRATFRTWAQEHT+Y +EVCELALAHVNSD+TRAAYARSEL++KRR LM DWERFCREGLP++GK  +I
Sbjct:  277 WTIPAERMKGGRAHKVPLCTSAVSLLESLSRD--SEYLFHNTKGGPLSDVSVSKVPKQLGHDVTVHGFRATFRTWAQEHTNYRDEVCELALAHVNSDSTRAAYARSELLDKRRLLMQDWERFCREGLPARGKVIRI 410          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2N5Y2N9_9GAMM (Integrase n=2 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y2N9_9GAMM)

HSP 1 Score: 196 bits (497), Expect = 2.110e-58
Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKI 408
            WTI   RMK G+ HKVPLC+ A+D+LK+LPRDHD  +IF +  G  LS++TL KV KDMGH VTQHGFR++FRTWAQEHT+Y +EVCELALAHVNSDA+RAAYARSELI+KRR LM DWE+FC+ GLP    +N +
Sbjct:  297 WTIDANRMKEGKSHKVPLCNAAIDILKALPRDHD--LIFPNRNGDRLSDVTLVKVAKDMGHAVTQHGFRSSFRTWAQEHTTYADEVCELALAHVNSDASRAAYARSELIDKRRLLMNDWEQFCKYGLPEDTGDNVV 430          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2A2F910_9GAMM (Integrase n=1 Tax=Halovibrio salipaludis TaxID=2032626 RepID=A0A2A2F910_9GAMM)

HSP 1 Score: 168 bits (426), Expect = 6.630e-48
Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLP 384
            WT+P ERMK G++H +PLC EAV +L+S+P+    +++F  P G + SN  L+ +LK M   VT HGFR+TF+ WA++HT Y +EV ELALAHVN+DATRAAYARS LIEKRR+LM DWERF REGLP
Sbjct:  289 WTVPAERMKTGKEHTIPLCDEAVAILQSVPQGGPDDLVFAGPKGDIPSNNFLSSLLKRMEVPVTAHGFRSTFKDWARKHTGYADEVSELALAHVNTDATRAAYARSGLIEKRRQLMGDWERFTREGLP 416          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: UPI001D11FC59 (site-specific integrase n=2 Tax=Marinobacter zhanjiangensis TaxID=578215 RepID=UPI001D11FC59)

HSP 1 Score: 166 bits (419), Expect = 6.990e-48
Identity = 77/136 (56.62%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKI 408
            WT+P +RMK G+ H+VPL   A+DLLK + +    +++F  P G + SN  L+ +LK M   VT HGFR+TF+ WA+EHT+YP+EV ELALAHVNSDATRAAYARSELI+KRR LMADWE++C  G   K    K+
Sbjct:  185 WTVPADRMKSGKLHRVPLTDTAIDLLKGMEQGKPEDLVFPGPKGDVPSNNFLSALLKRMDQPVTSHGFRSTFKDWAREHTAYPDEVSELALAHVNSDATRAAYARSELIDKRRLLMADWEQYCYHGEAQKDDSGKV 320          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A142FLK0_9GAMM (Integrase n=1 Tax=Marinobacter sp. LQ44 TaxID=1749259 RepID=A0A142FLK0_9GAMM)

HSP 1 Score: 165 bits (418), Expect = 1.030e-46
Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRA 414
            WT+P +RMK G++H+VPL + A+DLLK + +    ++IF  P G + SN  L+ +LK M   VT HGFR+TF+ WA+EHT+Y +EV ELALAHVNSDATRAAYARSELI+KRR LMADWE++C  G   K +  K+ A
Sbjct:  289 WTVPADRMKSGKEHRVPLTNAAMDLLKGMEQGKPDDLIFPGPKGDIPSNNFLSALLKRMDQPVTAHGFRSTFKDWAREHTAYADEVSELALAHVNSDATRAAYARSELIDKRRLLMADWEQYCYHGKAKKEEGGKVVA 426          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: UPI0019D41D81 (site-specific integrase n=1 Tax=Marinobacter sp. LPB0319 TaxID=2769486 RepID=UPI0019D41D81)

HSP 1 Score: 163 bits (413), Expect = 5.660e-46
Identity = 81/134 (60.45%), Postives = 101/134 (75.37%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKEN 402
            WT+P +RMK G++H+VPL   AV+LLK +P    +++IF  P G + SN  LT +LK M  + T HGFR+TF+ WA+E TSY +EV ELALAHVNSDATRAAYARSELI+KRR LMADWE+FC EG   K +EN
Sbjct:  290 WTVPAQRMKSGKEHRVPLSETAVNLLKDMPPGEPNQLIFPGPKGDIPSNNFLTALLKRMEIESTIHGFRSTFKDWARECTSYADEVSELALAHVNSDATRAAYARSELIDKRRLLMADWEKFCTEG--EKAQEN 421          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: UPI001C2D34AD (site-specific integrase n=1 Tax=Marinobacterium ramblicola TaxID=2849041 RepID=UPI001C2D34AD)

HSP 1 Score: 163 bits (412), Expect = 6.920e-46
Identity = 79/127 (62.20%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPT-GKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREG 378
            WTIP ERMKGG+ HK+PL   AV L+++ PR   SE +F  P  G+ ++++ ++KV K +GH VT HGFR+TFRTWAQE+TSY EE+CELALAHVNSDATRAAYAR EL++KRR LM+DWE F   G
Sbjct:  283 WTIPAERMKGGKAHKIPLTASAVKLVEAQPRL--SEYVFAGPRKGRPITDVAVSKVPKLLGHDVTAHGFRSTFRTWAQEYTSYAEEICELALAHVNSDATRAAYARGELVDKRRLLMSDWEHFILNG 407          
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A6N7M0Z7_9GAMM (DUF4102 domain-containing protein n=1 Tax=Alcanivorax sediminis TaxID=2663008 RepID=A0A6N7M0Z7_9GAMM)

HSP 1 Score: 161 bits (408), Expect = 2.120e-45
Identity = 75/123 (60.98%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFC 369
            WTIP +RMK G+ HKVPLC +AV++L+ +PR   S+ IF +P G   S++ LT +LK M  + T HGFR+TF+ WA+E TSY +EV ELALAHVNSDATRAAYARSELI+KRR+LMA+W  F 
Sbjct:  282 WTIPADRMKAGKPHKVPLCPDAVEILREIPRFEGSDFIFTAPRGGKFSDVALTALLKRMDIKATAHGFRSTFKDWAREQTSYADEVSELALAHVNSDATRAAYARSELIDKRRQLMAEWAAFA 404          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8IS05_9GAMM3.430e-95100.00Integrase n=2 Tax=Haliea TaxID=475794 RepID=A0A2D8... [more]
A0A2E3P3L8_9PROT2.960e-8489.93Integrase n=2 Tax=Proteobacteria TaxID=1224 RepID=... [more]
A0A356VJ65_9GAMM3.080e-5970.59Integrase n=2 Tax=Halieaceae bacterium TaxID=20267... [more]
A0A2N5Y2N9_9GAMM2.110e-5867.65Integrase n=2 Tax=Kineobactrum sediminis TaxID=190... [more]
A0A2A2F910_9GAMM6.630e-4860.94Integrase n=1 Tax=Halovibrio salipaludis TaxID=203... [more]
UPI001D11FC596.990e-4856.62site-specific integrase n=2 Tax=Marinobacter zhanj... [more]
A0A142FLK0_9GAMM1.030e-4656.52Integrase n=1 Tax=Marinobacter sp. LQ44 TaxID=1749... [more]
UPI0019D41D815.660e-4660.45site-specific integrase n=1 Tax=Marinobacter sp. L... [more]
UPI001C2D34AD6.920e-4662.20site-specific integrase n=1 Tax=Marinobacterium ra... [more]
A0A6N7M0Z7_9GAMM2.120e-4560.98DUF4102 domain-containing protein n=1 Tax=Alcanivo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109902contigM-pyrifera_M_contig109902:182..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score245.7
Seed ortholog evalue1.2e-62
Seed eggNOG ortholog1121937.AUHJ01000004_gene1113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Arm DNA-binding domain
EggNOG OGs1MU23@1224,1RMJ1@1236,465VD@72275,COG0582@1,COG0582@2
COG Functional cat.L
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.509693-CDS-M-pyrifera_M_contig109902:181..5801622815609.509693-CDS-M-pyrifera_M_contig109902:181..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109902 182..580 -
1692277485.9204116-CDS-M-pyrifera_M_contig109902:181..5801692277485.9204116-CDS-M-pyrifera_M_contig109902:181..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109902 182..580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.5251415-UTR-M-pyrifera_M_contig109902:580..6011622815609.5251415-UTR-M-pyrifera_M_contig109902:580..601Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109902 581..601 -
1692277485.9330645-UTR-M-pyrifera_M_contig109902:580..6011692277485.9330645-UTR-M-pyrifera_M_contig109902:580..601Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109902 581..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109902.2067.1prot_M-pyrifera_M_contig109902.2067.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109902 182..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109902.2067.1

>prot_M-pyrifera_M_contig109902.2067.1 ID=prot_M-pyrifera_M_contig109902.2067.1|Name=mRNA_M-pyrifera_M_contig109902.2067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLK
DMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSE
LIEKRRKLMADWERFCREGLPSKGKENKIRAR*
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mRNA from alignment at M-pyrifera_M_contig109902:182..601-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109902.2067.1 ID=mRNA_M-pyrifera_M_contig109902.2067.1|Name=mRNA_M-pyrifera_M_contig109902.2067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig109902:182..601- (Macrocystis pyrifera P11B4 male)
TGGACGATTCCGGGTGAGCGCATGAAAGGCGGTCGCGACCATAAGGTACC TTTGTGCCACGAGGCGGTAGATCTGCTGAAATCACTGCCCCGCGACCATG ACTCCGAGGTGATATTTGTGAGCCCGACCGGCAAGATGTTATCTAATATG ACCCTAACAAAGGTGTTAAAGGATATGGGGCATCAGGTCACGCAGCACGG CTTTAGGGCCACGTTCCGCACATGGGCACAGGAACACACTAGCTACCCAG AAGAAGTCTGCGAGCTCGCCTTGGCGCACGTCAACAGCGATGCCACCCGC GCCGCCTATGCCCGGTCCGAATTGATCGAAAAGCGCCGCAAGCTGATGGC CGATTGGGAGCGATTTTGCCGCGAAGGACTGCCATCCAAGGGTAAGGAGA ATAAGATCCGGGCGCGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109902:182..601-

>mRNA_M-pyrifera_M_contig109902.2067.1 ID=mRNA_M-pyrifera_M_contig109902.2067.1|Name=mRNA_M-pyrifera_M_contig109902.2067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig109902:182..601- (Macrocystis pyrifera P11B4 male)
ATGAAAGGCGGTCGCGACCATAAGGTACCTTTGTGCCACGAGGCGGTAGA
TCTGCTGAAATCACTGCCCCGCGACCATGACTCCGAGGTGATATTTGTGA
GCCCGACCGGCAAGATGTTATCTAATATGACCCTAACAAAGGTGTTAAAG
GATATGGGGCATCAGGTCACGCAGCACGGCTTTAGGGCCACGTTCCGCAC
ATGGGCACAGGAACACACTAGCTACCCAGAAGAAGTCTGCGAGCTCGCCT
TGGCGCACGTCAACAGCGATGCCACCCGCGCCGCCTATGCCCGGTCCGAA
TTGATCGAAAAGCGCCGCAAGCTGATGGCCGATTGGGAGCGATTTTGCCG
CGAAGGACTGCCATCCAAGGGTAAGGAGAATAAGATCCGGGCGCGCTAGA
TGAAAGGCGGTCGCGACCATAAGGTACCTTTGTGCCACGAGGCGGTAGAT
CTGCTGAAATCACTGCCCCGCGACCATGACTCCGAGGTGATATTTGTGAG
CCCGACCGGCAAGATGTTATCTAATATGACCCTAACAAAGGTGTTAAAGG
ATATGGGGCATCAGGTCACGCAGCACGGCTTTAGGGCCACGTTCCGCACA
TGGGCACAGGAACACACTAGCTACCCAGAAGAAGTCTGCGAGCTCGCCTT
GGCGCACGTCAACAGCGATGCCACCCGCGCCGCCTATGCCCGGTCCGAAT
TGATCGAAAAGCGCCGCAAGCTGATGGCCGATTGGGAGCGATTTTGCCGC
GAAGGACTGCCATCCAAGGGTAAGGAGAATAAGATCCGGGCGCGCTAG
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