mRNA_M-pyrifera_M_contig109898.2066.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109898.2066.1
Unique NamemRNA_M-pyrifera_M_contig109898.2066.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A7Y2IIH1_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IIH1_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 4.440e-24
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEF 297
            RLY AF DRE  + G  YWI    +G   D ++  FA S EF   YG++ NR +LE+LY+N+L RQ D  GF+YW   ++S +L++  VVRW+ ANDEF
Sbjct:  236 RLYLAFFDREAGINGANYWIGVNAHGYSIDAISGQFAVSDEFINTYGSVDNRRYLEILYQNVLGRQPDAKGFNYWLGLLDSGQLNRGSVVRWVAANDEF 334          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A7Y2IHD0_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IHD0_9ACTN)

HSP 1 Score: 103 bits (258), Expect = 8.160e-24
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEFFARY 309
            RLYRAFL+REPD +G +YWI     GA  D +A  FA S+EFT  YG LSN+EFLE++Y+N+L R+AD +G  YW   ++   L +   VRWI A+ EF A Y
Sbjct:   68 RLYRAFLNREPDASGAQYWITVGE-GASLDAIAEQFAISQEFTETYGDLSNQEFLEVVYQNVLGRRADSSGLQYWLALVDDG-LERSRAVRWITASGEFRAAY 168          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A7Y2GRJ4_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GRJ4_9ACTN)

HSP 1 Score: 99.4 bits (246), Expect = 8.060e-23
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEF 297
            RLY AF +R+ ++AG  YWI     G   D ++  FA S+EF   YG++ N  +L++LY+N+L RQ DQAGFDYW   + + +L + GVVRW+  + EF
Sbjct:  228 RLYLAFFNRQAEIAGANYWIGLNATGVSIDRISAEFAVSQEFQNTYGSVDNEGYLQILYQNVLGRQPDQAGFDYWLGLLNNGDLDRGGVVRWVANDVEF 326          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A7Y2IGB7_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IGB7_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.330e-21
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEFFARY 309
            RLY AF +R+PD++G +YWI    +GA  D +AF F+ S EF   YG  S+R+F+ ++Y N+L RQ D +GF YW   +     ++  VVRWI  + EF A +
Sbjct:   84 RLYWAFFERDPDLSGARYWIDVFNDGASIDAIAFAFSSSAEFRQTYGATSDRDFVRIVYANVLGRQPDSSGFAYWTGLLRETPATRVDVVRWISGSTEFIAAH 186          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A7Y2IJ36_9ACTN (DUF4214 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IJ36_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 6.830e-20
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMES----------AELSQHGVVRWIVANDEFFARY 309
            RLYRAF DREP+++G KYW+    +G    ++A  F  S EF   Y   +N E+L  +Y N+L R  DQAGF+YW   ++           A LS+  +VRWI A  EF A+Y
Sbjct:   74 RLYRAFFDREPELSGAKYWLGVRESGHSLTNIAGYFTLSDEFANNYDGTNNEEYLRRVYPNVLGRDYDQAGFNYWLDLLQGTNTGGGNDSLATLSRGALVRWITAGAEFKAQY 186          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A7X7D7W9_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D7W9_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 1.490e-18
Identity = 42/99 (42.42%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEF 297
            RLY A+  R PD +G KYW+ + RN    DD++  FA+S EF  RYG+L N EF++L+YEN+LAR+ D AG+ +W  +++  + S+  V+R +  + E+
Sbjct:  309 RLYSAYFLRRPDTSGLKYWVGKVRNQTSLDDISEEFAQSTEFKDRYGSLGNAEFVKLVYENVLAREPDNAGYLHWTYRLDHGK-SRGWVMRQMCESPEY 406          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A2E3IM79_9PROT (P/Homo B domain-containing protein n=1 Tax=Geminicoccus sp. TaxID=2024832 RepID=A0A2E3IM79_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 2.510e-18
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEFFA 303
            R+Y+A LDREPD  G +YW  E  +G    D+   F  S EFT++YG  +N EF+ LLY+N+L R+ DQ G+DYW  +++S   ++  VV     +DEF A
Sbjct:  788 RIYQATLDREPDQEGFEYWTDELSSGQSVSDVISSFLSSPEFTSKYGDTTNGEFVTLLYQNVLDREPDQGGYDYWVGELDSG-TTRDDVVVGFAESDEFKA 887          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A349AZN9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349AZN9_9ACTN)

HSP 1 Score: 85.9 bits (211), Expect = 1.470e-17
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEF 297
            RLYRA+  REPD  G  YW      G   D ++  FARS EF  RYG++ NR FLEL+Y N+L R  DQ+G+DYW  +M    L    V+ +   +DEF
Sbjct:   48 RLYRAYFLREPDADGFAYWNGVYAMGYPLDKISNDFARSDEFQQRYGSVDNRRFLELVYHNVLGRDPDQSGYDYWLDQMNRGMLRGF-VMIYFSDSDEF 145          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: UPI001FB225DE (DUF4214 domain-containing protein n=1 Tax=Orrella sp. f23 TaxID=2782176 RepID=UPI001FB225DE)

HSP 1 Score: 85.5 bits (210), Expect = 2.940e-17
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNRE-FLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEFFA 303
            R+Y+A  DR PD +G  YWIA+   GA    +A GF +S EF TRYG  S+ E F++LLY N+L RQ DQ+G+DYW   M S  LS+  V+ +   + E  A
Sbjct:  541 RIYQAAFDRAPDTSGLGYWIAQMDQGASLSSVAMGFVQSLEFETRYGASSSDEQFVDLLYANVLDRQPDQSGYDYWIDVM-SKGLSRADVLAYFSESAENIA 641          
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Match: A0A7Y2IKT8_9ACTN (DUF4214 domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IKT8_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 2.410e-16
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = 1
Query:    1 RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLSNREFLELLYENMLARQADQAGFDYWWQKMESA----------ELSQHGVVRWIVANDEFFARY 309
            RLY+A+ DR+PD+AG KYW+   R G     +A   A S+EF   Y ++S+  +L  +Y+NML R AD++G++YW   +             +LS+  VV ++ A  EF   Y
Sbjct:   70 RLYQAYFDRQPDLAGAKYWLGVRRQGHRQLAIAKFMAASQEFANNYQSVSDEVYLTRVYQNMLGRDADESGYNYWLDAVRGTNEFGGNPNRTDLSRGEVVFYVTAGQEFIRNY 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109898.2066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2IIH1_9ACTN4.440e-2447.47DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7Y2IHD0_9ACTN8.160e-2451.46DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7Y2GRJ4_9ACTN8.060e-2344.44DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7Y2IGB7_9ACTN1.330e-2142.72DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A7Y2IJ36_9ACTN6.830e-2041.59DUF4214 domain-containing protein (Fragment) n=1 T... [more]
A0A7X7D7W9_9ACTN1.490e-1842.42DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]
A0A2E3IM79_9PROT2.510e-1843.56P/Homo B domain-containing protein n=1 Tax=Geminic... [more]
A0A349AZN9_9ACTN1.470e-1745.45Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI001FB225DE2.940e-1746.08DUF4214 domain-containing protein n=1 Tax=Orrella ... [more]
A0A7Y2IKT8_9ACTN2.410e-1636.28DUF4214 domain-containing protein n=1 Tax=Acidimic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109898contigM-pyrifera_M_contig109898:17..325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue2.5e-12
Seed eggNOG ortholog1054213.HMPREF9946_00064
KEGG koko:K01406
KEGG Pathwayko01503,map01503
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4214)
EggNOG OGs1NN0T@1224,2VFRC@28211,COG2340@1,COG2340@2,COG2931@1,COG2931@2
EC3.4.24.40
COG Functional cat.Q
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.4713132-CDS-M-pyrifera_M_contig109898:16..3251622815609.4713132-CDS-M-pyrifera_M_contig109898:16..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109898 17..325 +
1692277485.9027686-CDS-M-pyrifera_M_contig109898:16..3251692277485.9027686-CDS-M-pyrifera_M_contig109898:16..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109898 17..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109898.2066.1prot_M-pyrifera_M_contig109898.2066.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109898 17..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109898.2066.1

>prot_M-pyrifera_M_contig109898.2066.1 ID=prot_M-pyrifera_M_contig109898.2066.1|Name=mRNA_M-pyrifera_M_contig109898.2066.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
RLYRAFLDREPDVAGGKYWIAEARNGADPDDLAFGFARSREFTTRYGTLS
NREFLELLYENMLARQADQAGFDYWWQKMESAELSQHGVVRWIVANDEFF
ARY
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mRNA from alignment at M-pyrifera_M_contig109898:17..325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109898.2066.1 ID=mRNA_M-pyrifera_M_contig109898.2066.1|Name=mRNA_M-pyrifera_M_contig109898.2066.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig109898:17..325+ (Macrocystis pyrifera P11B4 male)
CGGCTCTATCGAGCCTTCCTTGATCGCGAACCCGACGTCGCCGGCGGCAA GTACTGGATCGCCGAGGCTCGCAATGGCGCCGACCCTGACGACCTCGCGT TCGGCTTCGCTCGCTCTCGCGAGTTCACCACTCGATACGGCACGCTCTCC AACCGTGAGTTCTTGGAGCTGCTCTATGAGAACATGCTCGCTCGTCAGGC CGATCAGGCGGGGTTCGACTACTGGTGGCAGAAGATGGAGTCAGCCGAGC TGAGCCAGCACGGTGTGGTGCGATGGATCGTGGCCAACGACGAGTTCTTC GCCCGGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109898:17..325+

>mRNA_M-pyrifera_M_contig109898.2066.1 ID=mRNA_M-pyrifera_M_contig109898.2066.1|Name=mRNA_M-pyrifera_M_contig109898.2066.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig109898:17..325+ (Macrocystis pyrifera P11B4 male)
CGGCTCTATCGAGCCTTCCTTGATCGCGAACCCGACGTCGCCGGCGGCAA
GTACTGGATCGCCGAGGCTCGCAATGGCGCCGACCCTGACGACCTCGCGT
TCGGCTTCGCTCGCTCTCGCGAGTTCACCACTCGATACGGCACGCTCTCC
AACCGTGAGTTCTTGGAGCTGCTCTATGAGAACATGCTCGCTCGTCAGGC
CGATCAGGCGGGGTTCGACTACTGGTGGCAGAAGATGGAGTCAGCCGAGC
TGAGCCAGCACGGTGTGGTGCGATGGATCGTGGCCAACGACGAGTTCTTC
GCCCGGTACCGGCTCTATCGAGCCTTCCTTGATCGCGAACCCGACGTCGC
CGGCGGCAAGTACTGGATCGCCGAGGCTCGCAATGGCGCCGACCCTGACG
ACCTCGCGTTCGGCTTCGCTCGCTCTCGCGAGTTCACCACTCGATACGGC
ACGCTCTCCAACCGTGAGTTCTTGGAGCTGCTCTATGAGAACATGCTCGC
TCGTCAGGCCGATCAGGCGGGGTTCGACTACTGGTGGCAGAAGATGGAGT
CAGCCGAGCTGAGCCAGCACGGTGTGGTGCGATGGATCGTGGCCAACGAC
GAGTTCTTCGCCCGGTAC
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