mRNA_M-pyrifera_M_contig10986.2064.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10986.2064.1
Unique NamemRNA_M-pyrifera_M_contig10986.2064.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10986.2064.1 vs. uniprot
Match: D7FZY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY1_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 7.650e-37
Identity = 55/76 (72.37%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 HGWTLHSSPGNTRDEPRTAFAVSYLRDGARLLSDSTGRKPDPEDKWSYADWAKDLPPGGVIEHPSVPLVWNGGKPL 228
            HGWTLHSS GN R+ PR A AVSY RDG  LLSD+ GR PDPEDKWSY DW  DLP GGV++HPSVPLVW+GG+P+
Sbjct:  132 HGWTLHSSLGNRRETPRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVKHPSVPLVWDGGRPV 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig10986.2064.1 vs. uniprot
Match: A0A6H5KL54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL54_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 6.700e-36
Identity = 56/76 (73.68%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 HGWTLHSSPGNTRDEPRTAFAVSYLRDGARLLSDSTGRKPDPEDKWSYADWAKDLPPGGVIEHPSVPLVWNGGKPL 228
            HGWTLHSSPGN R+  R A AVSY RDG  LLSD+ GR PDPEDKWSY DW  DLP GGV++HPSVPLVWNGG+P+
Sbjct:  321 HGWTLHSSPGNRRETRRVALAVSYFRDGTCLLSDTAGRSPDPEDKWSYGDWVGDLPVGGVVKHPSVPLVWNGGRPV 396
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10986.2064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZY1_ECTSI7.650e-3772.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL54_9PHAE6.700e-3673.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10986contigM-pyrifera_M_contig10986:6543..7805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size274
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10986.2064.1prot_M-pyrifera_M_contig10986.2064.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10986 6588..7804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.2228239-UTR-M-pyrifera_M_contig10986:6542..65871622815609.2228239-UTR-M-pyrifera_M_contig10986:6542..6587Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10986 6543..6587 -
1692277485.7641544-UTR-M-pyrifera_M_contig10986:6542..65871692277485.7641544-UTR-M-pyrifera_M_contig10986:6542..6587Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10986 6543..6587 -
1622815609.265299-UTR-M-pyrifera_M_contig10986:7804..78051622815609.265299-UTR-M-pyrifera_M_contig10986:7804..7805Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10986 7805..7805 -
1692277485.78969-UTR-M-pyrifera_M_contig10986:7804..78051692277485.78969-UTR-M-pyrifera_M_contig10986:7804..7805Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10986 7805..7805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.237193-CDS-M-pyrifera_M_contig10986:6587..67061622815609.237193-CDS-M-pyrifera_M_contig10986:6587..6706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10986 6588..6706 -
1692277485.7730587-CDS-M-pyrifera_M_contig10986:6587..67061692277485.7730587-CDS-M-pyrifera_M_contig10986:6587..6706Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10986 6588..6706 -
1622815609.2521045-CDS-M-pyrifera_M_contig10986:7695..78041622815609.2521045-CDS-M-pyrifera_M_contig10986:7695..7804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10986 7696..7804 -
1692277485.7810886-CDS-M-pyrifera_M_contig10986:7695..78041692277485.7810886-CDS-M-pyrifera_M_contig10986:7695..7804Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10986 7696..7804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10986.2064.1

>prot_M-pyrifera_M_contig10986.2064.1 ID=prot_M-pyrifera_M_contig10986.2064.1|Name=mRNA_M-pyrifera_M_contig10986.2064.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MGGRSTVRRATRGMNLERPSPSATCGTVHASSRILPGESLTPRTSGATRT
GRRICLQEALLSTLRFLSCGTAASP*
back to top

mRNA from alignment at M-pyrifera_M_contig10986:6543..7805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10986.2064.1 ID=mRNA_M-pyrifera_M_contig10986.2064.1|Name=mRNA_M-pyrifera_M_contig10986.2064.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at M-pyrifera_M_contig10986:6543..7805- (Macrocystis pyrifera P11B4 male)
CATGGGTGGACGCTCCACAGTTCGCCGGGCAACACGAGGGATGAACCTCG
AACGGCCTTCGCCGTCAGCTACCTGCGGGACGGTGCACGCCTCCTCTCGG
ATTCTACCGGGTGCGTATGTACTACGTATTTCGTATTGCTATCAGTTCGT
ATTCCGCTGTACGTTTTGTAGAACCGTCGGGGCTCCTTGTCTTCCCCCTT
GGGCAGTGGCGGAACCTGTTCTGCTGCTGTGTTCTGGTCTCGTGTGCTCG
ACGGATGACCGAAGCCCATCCATGAAATGCAGCACTGCTTCGTACTGTAC
TTCGTATTGCTATTATTGATGATAGCTGTACTTGGGCCGTTATGCGCCTC
GTAGTAGACCTGCTATCTACAGTGCGGTAGTGCTGCTTCTCTGGTTGTGC
ACCTCTAGGCTAGTGGTTGCATACGCATGTACATATGTAGCGATATGCGT
CTGTAATACGAACAGCGCACCTATATGTTGTTGTACATCTCCCGTTGTGC
ATACGTCTACTACTGTTGTTGCTGTGCATCTACTGCTGCTGCTGCACATC
TACTGTTGTTGTACACCCACTGCCGGGCATCATCTACTGCCTCGCATCTA
CTGCAAAACTTCTCCAATTGCATGAGGTCAACTCATGCAATCCCTCGATT
CATCCTGTGCCAAATTGTTGAAGTCTCTCAAAGGGTCAGCAATGTTTGCA
GTAGTGTTTACGCCTGGGCACAGCTTCAGCTTCGCCAAAATGGTTGATAA
ATCACCTTAATTCCTCATTACGTGTTCATTCCGAGAAATTTCCCGGGGTT
AGAGTTATCATGGGTTTTAGGTTTAGAGTCGAGTGTAGCTCAACCATGTT
TCATCGAAGATGAGACCAAGAACTTTCAGTCCCTTCATGTTTTTCTCTCG
CGTGGGGTTCAAGAAGATTCCCTTTGCTCGTTGATTTTCATCGAATTTTA
TTTTTCTGCGCAGGACAAAATGTACGCAAACAACTGCAGTTAGTTGTATT
GTACACACTGCAAGAAAAATGGAATTTTCGGAGATAAACCCGACTTCTTC
TCTTATCCGGCTTCTGCACGATCGCTGCGCGTGCGTCCTCACTCTTCAGG
AGAAAGCCTGACCCCGAGGACAAGTGGAGCTACGCGGACTGGGCGAAGGA
TTTGCCTCCAGGAGGCGTTATTGAGCACCCTTCGGTTCCTCTCGTGTGGA
ACGGCGGCAAGCCCCTGAGTCCTAAAAGATGATGACCCGTTTGTTGTGGT
CCGTATGTTTTCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10986:6543..7805-

>mRNA_M-pyrifera_M_contig10986.2064.1 ID=mRNA_M-pyrifera_M_contig10986.2064.1|Name=mRNA_M-pyrifera_M_contig10986.2064.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig10986:6543..7805- (Macrocystis pyrifera P11B4 male)
ATGGGTGGACGCTCCACAGTTCGCCGGGCAACACGAGGGATGAACCTCGA
ACGGCCTTCGCCGTCAGCTACCTGCGGGACGGTGCACGCCTCCTCTCGGA
TTCTACCGGATGGGTGGACGCTCCACAGTTCGCCGGGCAACACGAGGGAT
GAACCTCGAACGGCCTTCGCCGTCAGCTACCTGCGGGACGGTGCACGCCT
CCTCTCGGATTCTACCGGGAGAAAGCCTGACCCCGAGGACAAGTGGAGCT
ACGCGGACTGGGCGAAGGATTTGCCTCCAGGAGGCGTTATTGAGCACCCT
TCGGTTCCTCTCGTGTGGAACGGCGGCAAGCCCCTGAGAGAAAGCCTGAC
CCCGAGGACAAGTGGAGCTACGCGGACTGGGCGAAGGATTTGCCTCCAGG
AGGCGTTATTGAGCACCCTTCGGTTCCTCTCGTGTGGAACGGCGGCAAGC
CCCTGA
back to top