mRNA_M-pyrifera_M_contig109839.2062.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109839.2062.1
Unique NamemRNA_M-pyrifera_M_contig109839.2062.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A354B6B6_9ACTN (Uncharacterized protein n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B6B6_9ACTN)

HSP 1 Score: 160 bits (404), Expect = 6.940e-46
Identity = 87/150 (58.00%), Postives = 107/150 (71.33%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVE----GETLVGEVLWVDRFGNCQLNIDPLELATF----GEHLMVTIGG-----DERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATLDENPNR-GVVTSVELGKRP 408
            +T+LGPEI+PA L+PG+LP+S+ E    G+ LV EVLWVD +GNCQLN+DPLEL +     G  +MVTIG      DERV VR DA+D +P GR+GLVVDSSGLLS+ VAR SA+ E GL EG E+RI  LD +    GV  SV+LG RP
Sbjct:  155 ITELGPEIDPATLLPGVLPISRFESGEHGQELVCEVLWVDHYGNCQLNVDPLELLSITDSPGGEVMVTIGAGSATPDERVGVRVDAYDQIPAGRIGLVVDSSGLLSIAVARGSAALELGLGEGIELRIRDLDPSDRGPGVSKSVQLGPRP 304          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A3M2FSR7_ACTSX (Uncharacterized protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2FSR7_ACTSX)

HSP 1 Score: 155 bits (392), Expect = 2.700e-44
Identity = 75/136 (55.15%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLELATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATLDENPNRGVVTSVELGKRP 408
            LT LGPE++PA L+PGILPV+++EG+ LV EVLW+DRFGN QL++ P E+A  GE   +  G + R  VR  AFD++P GR+G +VDSSGL+++ VAR SA+A  G+ EGDEIR+  LD +   GVVT V+L  RP
Sbjct:  151 LTALGPELDPATLLPGILPVARMEGDELVTEVLWIDRFGNVQLDVGPDEIAGLGEEFRLRRGTESRTVVRVTAFDEIPAGRIGALVDSSGLVALAVARGSAAAVLGVTEGDEIRLVPLDADEAGGVVTPVDLSPRP 286          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A6B1AYY5_9ACTN (SAM-dependent chlorinase/fluorinase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AYY5_9ACTN)

HSP 1 Score: 153 bits (386), Expect = 2.150e-43
Identity = 70/135 (51.85%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLELATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATLDENPNRGVVTSVELGKR 405
            L  LG +I+  GL+PG+LPVSQ+EG+ LV EVLW+DRFGNCQLN+DP ++   G  ++V +   E++ +R +A+D +PTGR GL+VDSSGLLS+ +AR SA++EF L EGDEIR+A  D     G   +VE+ ++
Sbjct:  152 LEQLGEDIDTTGLVPGVLPVSQIEGDELVAEVLWIDRFGNCQLNVDPADIDHLGTTMLVIMANTEKIGMRTEAYDQIPTGRAGLMVDSSGLLSLAIARGSAASEFNLAEGDEIRLAATDGQQG-GATIAVEIQRK 285          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A7K2A1V1_9ACTN (SAM-dependent chlorinase/fluorinase n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A1V1_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 1.370e-40
Identity = 79/142 (55.63%), Postives = 98/142 (69.01%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLE---LATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATLDENPNRG----VVTSVELGKR 405
            L+DLGP ++ A L PG+LPVS+ +G+ LV EVLWVDRFGNCQLN+DP E   +A  G  L VT+G D R A RA A+ DVP GRVGLV DSSGL+S+ + + SA+ E GLHEG E+R+AT   +  R     VVT V L  R
Sbjct:  158 LSDLGPAVDVATLTPGMLPVSRRDGDDLVAEVLWVDRFGNCQLNVDPAEVDEMAATGALLQVTVGEDLRTAERARAYADVPPGRVGLVTDSSGLVSLALPQRSAADELGLHEGSEVRVATAAASDRRAGSRTVVTPVGLNPR 299          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A6B1EC47_9ACTN (SAM-dependent chlorinase/fluorinase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EC47_9ACTN)

HSP 1 Score: 142 bits (359), Expect = 3.140e-39
Identity = 78/142 (54.93%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLEL---ATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATLDENPNRGVV---TSVELGKRP 408
            ++ LGP I+PA LMPG+LPVS  EG+ LV EVLW+DRFGNCQLN+DP EL   A  G  L V  G D R A R  A+ DV  GRVGL+VDSSGL+S+ V R S + + GLHEG E+RI       + G V   T V LG+RP
Sbjct:  147 ISALGPPIDPATLMPGMLPVSGREGDDLVAEVLWIDRFGNCQLNLDPAELDELAPAGAPLQVAAGEDLRTAERVSAYADVSPGRVGLLVDSSGLVSLAVPRRSVAEDLGLHEGAEVRIGATATGGSDGAVPTATRVGLGRRP 288          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A349B680_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B680_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 5.160e-36
Identity = 68/138 (49.28%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLELATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATLDENPNRG-VVTSVELGKRPQ 411
            LT+LG  ++P+ L PG++PV + E   LV +VLW+DRFGNCQLN+DP ++A +G+ + + IGG  R A R DAF  +  G VGLVVDS GLL+V + R SA  E  L  G E+R+  LD++   G + T V LG RPQ
Sbjct:  152 LTELGDLVDPSSLTPGLIPVMREEDGDLVCDVLWIDRFGNCQLNVDPDDIADWGDRIGLRIGGQLRTARRVDAFARIKEGEVGLVVDSYGLLTVALDRRSAHVELDLGTGQEVRLQRLDDDEGAGGITTPVGLGPRPQ 289          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: UPI001AA0438C (SAM-dependent chlorinase/fluorinase n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0438C)

HSP 1 Score: 130 bits (328), Expect = 1.110e-34
Identity = 62/138 (44.93%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLELATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATL---DENPNRGVVTSVELGKR 405
            L +LG  ++P  L+PG+LPV+  +G  LVGEVLW+DR+GN QLN+DP E+  +GE + +   G++R A R   F ++  G +GLVVDS GL+SVVV R SA+ E GL    E+R+  +   DE    G+ T+V L ++
Sbjct:  151 LEELGEVVDPVTLLPGVLPVTHEDGAALVGEVLWIDRYGNAQLNVDPAEIEPYGERVRLRFEGEQRTARRVRTFAELAAGEIGLVVDSYGLVSVVVDRHSAAQELGLRPSTEVRLEPIPDSDEGEESGITTAVHLARK 288          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A7X7HRY2_9ACTN (SAM-dependent chlorinase/fluorinase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HRY2_9ACTN)

HSP 1 Score: 130 bits (326), Expect = 2.110e-34
Identity = 64/142 (45.07%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLELATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIAT------LDENPNRGVVTSVELGKRP 408
            L +LGPE++P  L PG++P+++ E   L+ EVLW D FGN QLN+DP E+ + GE + +   G  R  +R  A+D++  G VGLVVDS GL+S+ V R SA+ E G+  GDE++I        +D  P  G VTSV LG +P
Sbjct:  150 LLELGPEVDPVTLTPGMIPITREEEGHLIAEVLWTDHFGNLQLNVDPAEIESLGERIELRFDGRARTGIRRTAYDEIGVGEVGLVVDSYGLMSLAVNRGSAAEELGIATGDEVKIVLGEAGDDIDPGPT-GAVTSVTLGAKP 290          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A8F4J490_9ACTN (SAM-dependent chlorinase/fluorinase n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4J490_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 5.770e-34
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLELATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIATL-DENPNRGVVTSVELGKR 405
            L DLG E++ AGLMP  +P+++VE + L  EVLW DR+GN QLN+DP E+   G+ + +  GG  R  VR   + +VPTG +GLVVDS GL+S+ V R+SA+ E  L  GDE+ +  L D+ P  G  T V L ++
Sbjct:  152 LLDLGVEVDTAGLMPATIPITRVEEDVLYAEVLWTDRYGNLQLNVDPAEVEAHGDRIELRFGGKVRTGVRHHTYAEVPTGEIGLVVDSYGLISIAVDRASAAEELRLDTGDEVALVALPDDGPQPGRSTPVTLREK 287          
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Match: A0A537THB9_9ACTN (SAM-dependent chlorinase/fluorinase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537THB9_9ACTN)

HSP 1 Score: 127 bits (320), Expect = 2.340e-33
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLELATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSSASAEFGLHEGDEIRIA 348
            L  LGPEI+P  L+PGI+P++++E   LVGEVLWVDRFGN QLN+DP E+A  G+ + +      R A RA  +DD+  GR+GL+VDS GLLSV +AR SAS E  LH GD + +A
Sbjct:  152 LDALGPEIDPVTLLPGIVPLTRIEDGALVGEVLWVDRFGNAQLNVDPEEVAAMGDVVTLRWSDKTRTAHRAGTYDDLGPGRIGLIVDSYGLLSVALARRSASDELHLHAGDAVTLA 267          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109839.2062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A354B6B6_9ACTN6.940e-4658.00Uncharacterized protein n=9 Tax=Acidimicrobiaceae ... [more]
A0A3M2FSR7_ACTSX2.700e-4455.15Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A6B1AYY5_9ACTN2.150e-4351.85SAM-dependent chlorinase/fluorinase n=1 Tax=Acidim... [more]
A0A7K2A1V1_9ACTN1.370e-4055.63SAM-dependent chlorinase/fluorinase n=7 Tax=Acidim... [more]
A0A6B1EC47_9ACTN3.140e-3954.93SAM-dependent chlorinase/fluorinase n=2 Tax=Acidim... [more]
A0A349B680_9ACTN5.160e-3649.28Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI001AA0438C1.110e-3444.93SAM-dependent chlorinase/fluorinase n=1 Tax=Rhabdo... [more]
A0A7X7HRY2_9ACTN2.110e-3445.07SAM-dependent chlorinase/fluorinase n=1 Tax=Acidim... [more]
A0A8F4J490_9ACTN5.770e-3446.32SAM-dependent chlorinase/fluorinase n=1 Tax=Aquiha... [more]
A0A537THB9_9ACTN2.340e-3354.31SAM-dependent chlorinase/fluorinase n=1 Tax=Actino... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109839contigM-pyrifera_M_contig109839:189..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score108.2
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog1313172.YM304_37870
KEGG koko:K22205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring alkyl or aryl (other than methyl) groups
EggNOG OGs2IASJ@201174,COG1912@1,COG1912@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.1496482-CDS-M-pyrifera_M_contig109839:188..6021622815609.1496482-CDS-M-pyrifera_M_contig109839:188..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109839 189..602 -
1692277485.7419088-CDS-M-pyrifera_M_contig109839:188..6021692277485.7419088-CDS-M-pyrifera_M_contig109839:188..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109839 189..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109839.2062.1prot_M-pyrifera_M_contig109839.2062.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109839 189..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109839.2062.1

>prot_M-pyrifera_M_contig109839.2062.1 ID=prot_M-pyrifera_M_contig109839.2062.1|Name=mRNA_M-pyrifera_M_contig109839.2062.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
LTDLGPEIEPAGLMPGILPVSQVEGETLVGEVLWVDRFGNCQLNIDPLEL
ATFGEHLMVTIGGDERVAVRADAFDDVPTGRVGLVVDSSGLLSVVVARSS
ASAEFGLHEGDEIRIATLDENPNRGVVTSVELGKRPQ*
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mRNA from alignment at M-pyrifera_M_contig109839:189..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109839.2062.1 ID=mRNA_M-pyrifera_M_contig109839.2062.1|Name=mRNA_M-pyrifera_M_contig109839.2062.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig109839:189..602- (Macrocystis pyrifera P11B4 male)
CTCACCGACCTCGGACCCGAGATCGAGCCGGCCGGGCTGATGCCCGGGAT CCTGCCGGTCAGCCAGGTCGAGGGTGAGACGCTCGTGGGCGAGGTCCTGT GGGTCGACCGCTTCGGCAACTGTCAGCTCAACATCGACCCGCTCGAGCTC GCGACGTTCGGCGAACACCTCATGGTCACCATCGGCGGCGACGAGCGAGT CGCCGTTCGAGCCGACGCCTTCGACGACGTGCCCACCGGGCGGGTCGGAC TCGTCGTCGACTCCAGCGGGCTCCTGTCCGTCGTGGTGGCCCGCTCCTCG GCCTCGGCCGAGTTCGGTCTCCACGAAGGCGACGAGATCCGGATCGCCAC CCTCGACGAGAACCCCAACCGGGGCGTCGTCACCTCGGTCGAACTCGGAA AGCGGCCCCAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109839:189..602-

>mRNA_M-pyrifera_M_contig109839.2062.1 ID=mRNA_M-pyrifera_M_contig109839.2062.1|Name=mRNA_M-pyrifera_M_contig109839.2062.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig109839:189..602- (Macrocystis pyrifera P11B4 male)
CTCACCGACCTCGGACCCGAGATCGAGCCGGCCGGGCTGATGCCCGGGAT
CCTGCCGGTCAGCCAGGTCGAGGGTGAGACGCTCGTGGGCGAGGTCCTGT
GGGTCGACCGCTTCGGCAACTGTCAGCTCAACATCGACCCGCTCGAGCTC
GCGACGTTCGGCGAACACCTCATGGTCACCATCGGCGGCGACGAGCGAGT
CGCCGTTCGAGCCGACGCCTTCGACGACGTGCCCACCGGGCGGGTCGGAC
TCGTCGTCGACTCCAGCGGGCTCCTGTCCGTCGTGGTGGCCCGCTCCTCG
GCCTCGGCCGAGTTCGGTCTCCACGAAGGCGACGAGATCCGGATCGCCAC
CCTCGACGAGAACCCCAACCGGGGCGTCGTCACCTCGGTCGAACTCGGAA
AGCGGCCCCAATGACTCACCGACCTCGGACCCGAGATCGAGCCGGCCGGG
CTGATGCCCGGGATCCTGCCGGTCAGCCAGGTCGAGGGTGAGACGCTCGT
GGGCGAGGTCCTGTGGGTCGACCGCTTCGGCAACTGTCAGCTCAACATCG
ACCCGCTCGAGCTCGCGACGTTCGGCGAACACCTCATGGTCACCATCGGC
GGCGACGAGCGAGTCGCCGTTCGAGCCGACGCCTTCGACGACGTGCCCAC
CGGGCGGGTCGGACTCGTCGTCGACTCCAGCGGGCTCCTGTCCGTCGTGG
TGGCCCGCTCCTCGGCCTCGGCCGAGTTCGGTCTCCACGAAGGCGACGAG
ATCCGGATCGCCACCCTCGACGAGAACCCCAACCGGGGCGTCGTCACCTC
GGTCGAACTCGGAAAGCGGCCCCAATGA
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