mRNA_M-pyrifera_M_contig109830.2061.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109830.2061.1
Unique NamemRNA_M-pyrifera_M_contig109830.2061.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A0A517W7M2_9PLAN (YHS domain protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517W7M2_9PLAN)

HSP 1 Score: 287 bits (734), Expect = 1.200e-90
Identity = 191/201 (95.02%), Postives = 192/201 (95.52%), Query Frame = 1
Query:    1 NSGSAAGRGTVNQ-PAAQAQSTPAQXXXXQTSATPQNVVVMPQQQVPPAPEERKWYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPPAPAPESVVTTPTADDEAKFTKSMVPSQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            N GSAAGRGTVNQ PAAQAQSTP  XXXX T ATPQNVVVMPQQQVPPAPEERKWYDKFLPGKTKQTPKRLPQSNQV KKAPVDSPAVEEVQ  AAPELPPAPAPESVVTTPTADDEAKFTKSMVPSQE+LDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE
Sbjct:  181 NGGSAAGRGTVNQQPAAQAQSTPXXXXXXXTPATPQNVVVMPQQQVPPAPEERKWYDKFLPGKTKQTPKRLPQSNQVVKKAPVDSPAVEEVQI-AAPELPPAPAPESVVTTPTADDEAKFTKSMVPSQEDLDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 380          
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A0A517Q261_9PLAN (YHS domain protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q261_9PLAN)

HSP 1 Score: 209 bits (531), Expect = 1.100e-60
Identity = 155/206 (75.24%), Postives = 171/206 (83.01%), Query Frame = 1
Query:    1 NSGSAAGRGTVN-QPAAQAQSTPAQXXXXQTSATPQNVVVMPQQQVPPAPEERKWYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSA---APELPPAPAPESVVTTP--TADDEAKFTKSMVPSQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            N+GS  GRGTVN QPAAQ    PA XXXX  +  PQNVVV PQ Q+PP PEERKWYDKFLPGK+KQTPKRL QS+QVAKKAPVD+PAVEE + +    AP+LP APAP+SVV TP    D EA   KS+ P+QEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLI+E+KT  VVEEKVAKNPEDDFN+LFP+
Sbjct:  181 NNGSGVGRGTVNAQPAAQ----PAAXXXXXXA--PQNVVVQPQPQLPPKPEERKWYDKFLPGKSKQTPKRLSQSHQVAKKAPVDAPAVEETKAAPLPPAPQLPAAPAPQSVVNTPEPATDQEATVAKSVTPTQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIIEKKTAVVVEEKVAKNPEDDFNDLFPD 380          
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A0A518I7P8_9PLAN (YHS domain protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I7P8_9PLAN)

HSP 1 Score: 122 bits (307), Expect = 5.950e-29
Identity = 97/199 (48.74%), Postives = 118/199 (59.30%), Query Frame = 1
Query:   19 GRGTVNQPAAQAQSTPAQXXXXQTSATPQNVVVMPQQQVPPAPEERK-WYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPPAPAPE--SVVTTP-TADDEAK-FTKSMVPSQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            GRGTV Q  A            Q +  PQ +V  PQQ + P PEE+K WY+KFLP KTKQTPKRLPQS+QV KKAPV+ P  E+ +  A P+LP APAP   S+VT P T + E +   K+ +P  EELDE+                  Q+IAA K     KE A E PLI EEKT +V +EK+  +PEDDFNNLFPE
Sbjct:  183 GRGTVKQNPA-----------PQLTPAPQKMVGAPQQNIIPQPEEKKKWYEKFLPTKTKQTPKRLPQSHQVVKKAPVNVPVAEKTKAPALPQLPAAPAPAQPSIVTGPQTLETETESVVKTPMPVTEELDEDK----LEELEEAAERLEEQRIAAAK---QAKESAVETPLI-EEKTAKVAQEKILISPEDDFNNLFPE 362          
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A0A2E2BUL8_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BUL8_9PLAN)

HSP 1 Score: 109 bits (273), Expect = 2.740e-24
Identity = 100/206 (48.54%), Postives = 123/206 (59.71%), Query Frame = 1
Query:   19 GRGTVNQ-------PAAQAQSTPAQXXXXQTSATPQNVVVMPQQQVPPAPEER-KWYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPPAPAPESV--VTTPT--ADDEAKFTKSMVPSQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            GRGTVN        PAA A++TPA        A PQNV+V PQQ V   PEE+ KWY+KFLP K   TPK+LP+SNQ+AKKAP ++P     Q    P+ PPAPAPE+   +  P   AD      ++M P+  ELDE+       XXXXXXXXXXX       AEK+ KE AA++P+IVE+         VA NPED+F NLFPE
Sbjct:  229 GRGTVNPTPAAPQTPAATARTTPAPQ-----QAAPQNVIVAPQQNVAQQPEEKTKWYEKFLPSKN--TPKKLPKSNQIAKKAPTETPVAPPAQQPVTPDFPPAPAPENQPQIAGPEQPADSPESVARTMTPAASELDEDDLEELREXXXXXXXXXXXA------AEKLAKEAAADMPVIVEQSPQSETPAVVA-NPEDEFKNLFPE 420          
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A0A517VCZ7_9PLAN (YHS domain protein n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VCZ7_9PLAN)

HSP 1 Score: 103 bits (257), Expect = 3.680e-22
Identity = 99/205 (48.29%), Postives = 119/205 (58.05%), Query Frame = 1
Query:   19 GRGTVN-QPAAQ----AQSTPAQXXXXQTSATPQNVVVMPQQQVPPAPEERK-WYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPPAPAPESVVTT-----PTADDEAKFTKSMVPSQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            GRGTVN  PA Q    A +TPA    X        V+V PQQ V    E++K WY+ FLP KTK++PKRLP+SNQ+AKKAPVD+   E ++  A P L PAPAPE+         P A  E+   K+M P+  ELDE+             XXXXX +IAAEK  K   E AAELP IVE  T E    KVA NPED+F +LFPE
Sbjct:  175 GRGTVNTNPAPQQTPAATATPAPQQAXXXXXXXXXVIVAPQQNVAQDSEDKKKWYEMFLPSKTKKSPKRLPKSNQIAKKAPVDNSVTESIEQPATPVLAPAPAPENQPVAAGPEQPVATPES-VAKTMTPAVGELDEDE---LEELREEAEXXXXXXRIAAEKRSK---EAAAELPAIVEN-TPESGAAKVAINPEDEFEDLFPE 371          
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A0A517RAN8_9PLAN (YHS domain protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RAN8_9PLAN)

HSP 1 Score: 101 bits (251), Expect = 2.270e-21
Identity = 103/206 (50.00%), Postives = 119/206 (57.77%), Query Frame = 1
Query:    1 NSGSAAGRGTVNQPAAQAQSTPAQXXXXQTSATPQNVVVMPQQQ-VPPAPEERKWYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPPAPAPESVVTTPTADDEAKFTKSMVPSQEEL-----DEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            NSGSAAGRG VN P A  Q+ P Q          QNV    QQ  +P   E++KWY+KFLP KTKQTPKRLPQS+QV KKAPV++P +E+    A P+LP AP                                 DEE +XXXXXXXXXXXX    Q+IAA       KE AAE PLI EEKTVEV +EK+  +PEDDF NLFPE
Sbjct:  177 NSGSAAGRGVVNPPPA-TQAAPVQ----------QNVAGAAQQHLIPKMEEKKKWYEKFLPAKTKQTPKRLPQSHQVVKKAPVNTPVMEKTIAPAQPQLPAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDDEELKXXXXXXXXXXXX----QRIAA------AKESAAETPLI-EEKTVEVAQEKIIISPEDDFKNLFPE 360          
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A0A517WU91_9PLAN (YHS domain protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WU91_9PLAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.720e-17
Identity = 82/204 (40.20%), Postives = 106/204 (51.96%), Query Frame = 1
Query:   10 SAAGRGTVNQPAAQAQSTPAQXXXXQTSATPQNVVVMPQQQVPPAPE-ERKWYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPPAPAPES--VVTTPT--ADDEAKFTKSMVPSQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAE--KMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            SA+GRG VN+P                   PQN+V  P Q     P  +RKWY+KFLP K  QTPKRL QSNQ  KKAP+ SPA ++  +SA P+LP APAPE+  VVTTP    ++EA    ++ PS E+L +E                  Q+ AA+  E  K+ + K  +     EEK  E   E V    ED+F NLFP+
Sbjct:  179 SASGRGVVNRP-----------QPSNAQPAPQNIVRTPSQNGLQQPNVKRKWYEKFLPRKANQTPKRLQQSNQYVKKAPLSSPATKKPVSSAQPQLPTAPAPETQTVVTTPQKPVENEASVANTVAPSTEKLSDEE-----------------QEEAAKGLEEQKIAETKETDETQFTEEKITETSPENVVL--EDEFKNLFPD 352          
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Match: A6C726_9PLAN (Zinc metalloprotease ZmpB, putative n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6C726_9PLAN)

HSP 1 Score: 77.8 bits (190), Expect = 3.210e-13
Identity = 80/206 (38.83%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   19 GRGTVNQ-------PAAQAQSTPAQXXXXQTSATPQNVVVMPQQQVPPAPEER-KWYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPPAPAPE--SVVTTPT--ADDEAKFTKSMVPSQEELDEEARXXXXXXXXXXXXXXXXQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE 600
            GRGTVN        PA  A++T   XXXX  ++ P+NV+V+PQQ V    EE+ KWY+KFLP KTK+TPK                          +PE  PAPAPE  S+V  P   AD      ++M P+ EELDE+                  Q++AAEK   + K+ + E+P IVE+      + KV  NPEDDF +LFPE
Sbjct:  175 GRGTVNTSPAPQQTPATTAKATXXXXXXXXXNSAPRNVIVVPQQSVAQESEEKPKWYEKFLPSKTKKTPKXXXXXXXXXXXXXXXXXXXXXXXXXVSPEFDPAPAPEAPSIVAGPEQPADTPESVARTMTPAGEELDEDE---LEELREEAEERLEEQRMAAEK---LAKDASVEVPAIVEQSPASE-DGKVVINPEDDFKDLFPE 373          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109830.2061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A517W7M2_9PLAN1.200e-9095.02YHS domain protein n=6 Tax=Gimesia TaxID=1649453 R... [more]
A0A517Q261_9PLAN1.100e-6075.24YHS domain protein n=2 Tax=Gimesia panareensis Tax... [more]
A0A518I7P8_9PLAN5.950e-2948.74YHS domain protein n=1 Tax=Gimesia fumaroli TaxID=... [more]
A0A2E2BUL8_9PLAN2.740e-2448.54Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517VCZ7_9PLAN3.680e-2248.29YHS domain protein n=2 Tax=Gimesia algae TaxID=252... [more]
A0A517RAN8_9PLAN2.270e-2150.00YHS domain protein n=2 Tax=Gimesia alba TaxID=2527... [more]
A0A517WU91_9PLAN1.720e-1740.20YHS domain protein n=2 Tax=Gimesia aquarii TaxID=2... [more]
A6C726_9PLAN3.210e-1338.83Zinc metalloprotease ZmpB, putative n=8 Tax=Planct... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109830contigM-pyrifera_M_contig109830:2..601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.9
Seed ortholog evalue2.4e-14
Seed eggNOG ortholog344747.PM8797T_04060
Hectar predicted targeting categoryother localisation
EggNOG free text desc.monooxygenase activity
EggNOG OGsCOG3350@1,COG3350@2
COG Functional cat.T
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size600
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.1164324-CDS-M-pyrifera_M_contig109830:1..6011622815609.1164324-CDS-M-pyrifera_M_contig109830:1..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109830 2..601 +
1692277485.731726-CDS-M-pyrifera_M_contig109830:1..6011692277485.731726-CDS-M-pyrifera_M_contig109830:1..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109830 2..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109830.2061.1prot_M-pyrifera_M_contig109830.2061.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109830 2..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109830.2061.1

>prot_M-pyrifera_M_contig109830.2061.1 ID=prot_M-pyrifera_M_contig109830.2061.1|Name=mRNA_M-pyrifera_M_contig109830.2061.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=200bp
NSGSAAGRGTVNQPAAQAQSTPAQSAPAQTSATPQNVVVMPQQQVPPAPE
ERKWYDKFLPGKTKQTPKRLPQSNQVAKKAPVDSPAVEEVQTSAAPELPP
APAPESVVTTPTADDEAKFTKSMVPSQEELDEEAREELEEAAEEAAERLE
EQKIAAEKAEKMLKEKAAELPLIVEEKTVEVVEEKVAKNPEDDFNNLFPE
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mRNA from alignment at M-pyrifera_M_contig109830:2..601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109830.2061.1 ID=mRNA_M-pyrifera_M_contig109830.2061.1|Name=mRNA_M-pyrifera_M_contig109830.2061.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig109830:2..601+ (Macrocystis pyrifera P11B4 male)
AACAGTGGATCTGCCGCAGGTCGGGGAACCGTCAATCAACCTGCAGCTCA GGCTCAGAGCACACCAGCTCAATCGGCTCCAGCTCAGACATCCGCCACTC CTCAGAACGTAGTCGTCATGCCTCAACAGCAGGTACCACCGGCTCCCGAA GAGCGGAAATGGTATGACAAGTTTCTGCCTGGCAAAACCAAGCAGACTCC TAAACGACTGCCTCAATCGAATCAGGTTGCTAAAAAAGCACCCGTCGATT CACCGGCTGTCGAAGAAGTTCAAACCTCAGCAGCTCCTGAGCTGCCTCCC GCACCGGCCCCTGAGTCTGTCGTAACCACACCGACTGCAGACGATGAAGC GAAGTTCACCAAATCCATGGTTCCTTCACAGGAAGAACTGGATGAAGAAG CTCGCGAAGAGTTGGAAGAAGCAGCAGAGGAAGCAGCCGAACGTCTGGAA GAGCAGAAAATCGCTGCTGAAAAGGCAGAAAAGATGCTGAAAGAAAAAGC CGCTGAACTGCCTCTCATCGTAGAAGAGAAAACGGTAGAAGTGGTAGAAG AAAAAGTTGCTAAAAACCCGGAAGATGATTTCAACAATCTGTTTCCCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109830:2..601+

>mRNA_M-pyrifera_M_contig109830.2061.1 ID=mRNA_M-pyrifera_M_contig109830.2061.1|Name=mRNA_M-pyrifera_M_contig109830.2061.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1200bp|location=Sequence derived from alignment at M-pyrifera_M_contig109830:2..601+ (Macrocystis pyrifera P11B4 male)
AACAGTGGATCTGCCGCAGGTCGGGGAACCGTCAATCAACCTGCAGCTCA
GGCTCAGAGCACACCAGCTCAATCGGCTCCAGCTCAGACATCCGCCACTC
CTCAGAACGTAGTCGTCATGCCTCAACAGCAGGTACCACCGGCTCCCGAA
GAGCGGAAATGGTATGACAAGTTTCTGCCTGGCAAAACCAAGCAGACTCC
TAAACGACTGCCTCAATCGAATCAGGTTGCTAAAAAAGCACCCGTCGATT
CACCGGCTGTCGAAGAAGTTCAAACCTCAGCAGCTCCTGAGCTGCCTCCC
GCACCGGCCCCTGAGTCTGTCGTAACCACACCGACTGCAGACGATGAAGC
GAAGTTCACCAAATCCATGGTTCCTTCACAGGAAGAACTGGATGAAGAAG
CTCGCGAAGAGTTGGAAGAAGCAGCAGAGGAAGCAGCCGAACGTCTGGAA
GAGCAGAAAATCGCTGCTGAAAAGGCAGAAAAGATGCTGAAAGAAAAAGC
CGCTGAACTGCCTCTCATCGTAGAAGAGAAAACGGTAGAAGTGGTAGAAG
AAAAAGTTGCTAAAAACCCGGAAGATGATTTCAACAATCTGTTTCCCGAA
AACAGTGGATCTGCCGCAGGTCGGGGAACCGTCAATCAACCTGCAGCTCA
GGCTCAGAGCACACCAGCTCAATCGGCTCCAGCTCAGACATCCGCCACTC
CTCAGAACGTAGTCGTCATGCCTCAACAGCAGGTACCACCGGCTCCCGAA
GAGCGGAAATGGTATGACAAGTTTCTGCCTGGCAAAACCAAGCAGACTCC
TAAACGACTGCCTCAATCGAATCAGGTTGCTAAAAAAGCACCCGTCGATT
CACCGGCTGTCGAAGAAGTTCAAACCTCAGCAGCTCCTGAGCTGCCTCCC
GCACCGGCCCCTGAGTCTGTCGTAACCACACCGACTGCAGACGATGAAGC
GAAGTTCACCAAATCCATGGTTCCTTCACAGGAAGAACTGGATGAAGAAG
CTCGCGAAGAGTTGGAAGAAGCAGCAGAGGAAGCAGCCGAACGTCTGGAA
GAGCAGAAAATCGCTGCTGAAAAGGCAGAAAAGATGCTGAAAGAAAAAGC
CGCTGAACTGCCTCTCATCGTAGAAGAGAAAACGGTAGAAGTGGTAGAAG
AAAAAGTTGCTAAAAACCCGGAAGATGATTTCAACAATCTGTTTCCCGAA
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