mRNA_M-pyrifera_M_contig109828.2060.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A7Y2N8B1_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8B1_9ACTN) HSP 1 Score: 169 bits (429), Expect = 5.210e-47 Identity = 83/156 (53.21%), Postives = 105/156 (67.31%), Query Frame = 1
Query: 7 VTMYFNSGGGHEDWTQAVANTWLQDLGVEVEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAA--PSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENV 468
VT+YFNSG GHEDW QAVAN W Q G+E EFI QEF+PYLD +Q E + GP+RLGW WD P A FL PLF + S+DN S + + DFDAA+A+FRA P + + + VL +MPV P+FF RGQ VHT+ ++NV T F Y E+E +
Sbjct: 406 VTVYFNSGSGHEDWIQAVANNWNQAFGIEAEFIGQEFAPYLDFVQGGE-IDGPFRLGWGWDYPHAVGFLEPLFKTGSTDNLSGFSNADFDAALAEFRALEDPVSPEAEALIVQMSEVLNEEMPVMPMFFSRGQIVHTDRITNVNLTAFDYVEMEKI 560
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A6L5FBJ1_9ACTN (ABC transporter substrate-binding protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L5FBJ1_9ACTN) HSP 1 Score: 140 bits (354), Expect = 2.730e-39 Identity = 70/159 (44.03%), Postives = 105/159 (66.04%), Query Frame = 1
Query: 1 GTVTMYFNSGGGHEDWTQAVANTWLQDLGVE-VEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENVVV 474
G VT++FNSG GHE+W +AVAN W Q+LG+E ++F + EF+ YL L + + GP+RLGW D P+AEN+L+P+ + +S NY+ Y + +F+ IA A ++ D A A+++L D+P+ P++FG+ Q VH+ENVSNVV F +L V V
Sbjct: 39 GPVTLWFNSGAGHEEWMEAVANLWRQNLGIEEIQFESLEFADYLGRLD-ERTIEGPFRLGWAMDYPSAENYLTPIHATGASSNYTGYDNPEFNDLIAQGDQAETQEDAIAAYNAAEDLLATDVPIIPMWFGQIQAVHSENVSNVVIDPFTRVDLAEVTV 196
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A7W1LKH3_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Geodermatophilaceae bacterium TaxID=1882271 RepID=A0A7W1LKH3_9ACTN) HSP 1 Score: 138 bits (347), Expect = 1.160e-36 Identity = 71/160 (44.38%), Postives = 102/160 (63.75%), Query Frame = 1
Query: 4 TVTMYFNSGGGHEDWTQAVANTWLQDLGVEVEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGAL---EEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENVVV 474
TV ++FN+ GGHEDW QAVA W DLG+E +Q F+PYL L+ +EGV GPYRLGWL D P+AEN+L PL+ E S NY ++ + DA +A A +E A+ +EA +++ +D+PV P+++G+ V+ EN+ NVVY +L +V V
Sbjct: 186 TVEIWFNNDGGHEDWVQAVAEGWKNDLGLEYSLESQPFTPYLKTLE-EEGVGGPYRLGWLPDYPSAENYLDPLY-GEGSSNYGQWAGPEHDAFLAAIEEADAEASAEAAVPIYQEAADIVLSDLPVFPLWYGQTSIVYAENLDNVVYDPLQQIKLGDVTV 343
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A7Y1UNC6_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1UNC6_9ACTN) HSP 1 Score: 140 bits (353), Expect = 3.380e-36 Identity = 69/157 (43.95%), Postives = 98/157 (62.42%), Query Frame = 1
Query: 4 TVTMYFNSGGGHEDWTQAVANTWLQDLGVEVEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENVVV 474
T+ + FNSG GHE W +AVAN W +LG+ F E++ YLD L +E P+RLGW WD P+ NFL+PL+ +S DN + + S + DA + + +E DG AL+EAQ ++ +PV PI +GR +TE++SNV YT FG+ E+VVV
Sbjct: 384 TLQIVFNSGAGHEQWVEAVANDWNANLGITANFQGFEWAAYLDYLFGEEPNTDPFRLGWGWDYPSGYNFLAPLYACDSGDNLTGFCSPELDAELEKVITSLTEEDGIPALKEAQRIVGDLIPVIPITYGRSAVAYTEDLSNVAYTDFGFFIFEDVVV 540
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A7V9T890_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7V9T890_9ACTN) HSP 1 Score: 138 bits (348), Expect = 1.760e-35 Identity = 71/160 (44.38%), Postives = 102/160 (63.75%), Query Frame = 1
Query: 4 TVTMYFNSGGGHEDWTQAVANTWLQDLGVEVEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGAL---EEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENVVV 474
TV ++FN+ GGHEDW QAVA W DLG+E +Q F+PYL L+ +EGV GPYRLGWL D P+AEN+L PL+ E S NY ++ + DA +A A +E A+ +EA +++ +D+PV P+++G+ V+ EN+ NVVY +L +V V
Sbjct: 386 TVEIWFNNDGGHEDWVQAVAEGWKNDLGLEYSLESQPFTPYLKTLE-EEGVGGPYRLGWLPDYPSAENYLDPLY-GEGSSNYGQWAGPEHDAFLATIEEADAEASAEAAVPIYQEAADIVLSDLPVFPLWYGQTSIVYAENLDNVVYDPLQQIKLGDVTV 543
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A6L5F5F4_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L5F5F4_9ACTN) HSP 1 Score: 138 bits (348), Expect = 2.160e-35 Identity = 69/159 (43.40%), Postives = 102/159 (64.15%), Query Frame = 1
Query: 1 GTVTMYFNSGGGHEDWTQAVANTWLQDLGVE-VEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENVVV 474
G VTM+FNSG GHE+W +A+AN W Q+LG+E + F + EF+ YL L + + GP+RLGWL D P+AE++L+ ++ +S NYS Y + DFDA I + A ++ + A A+++L D+P P++F Q +H+E VSNV VF + L VVV
Sbjct: 407 GPVTMWFNSGAGHEEWIEAIANQWRQNLGIEEIVFESLEFADYLGRLDQNS-LTGPFRLGWLMDYPSAESYLTAIYTGGASSNYSGYDNPDFDALIDEGDQAATQEEAIAAYNAAEDLLIEDLPSIPLWFREEQGIHSERVSNVTIDVFAHVNLPKVVV 564
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: UPI0003B438B9 (ABC transporter substrate-binding protein n=1 Tax=Nesterenkonia alba TaxID=515814 RepID=UPI0003B438B9) HSP 1 Score: 132 bits (333), Expect = 2.120e-33 Identity = 68/155 (43.87%), Postives = 104/155 (67.10%), Query Frame = 1
Query: 7 VTMYFNSGGGHEDWTQAVANTWLQDLGVE-VEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENV 468
+T+YFNSG GHEDWT+AVAN W+ +LGV+ V F + EF+ YLD+L+ + + GPYRLGW P+A+ L P++ S++S NY+ + S++FD IA AA ++ + A +EA++VL ++PV P++F V +EN+ NV T G ++E V
Sbjct: 377 LTIYFNSGAGHEDWTEAVANQWMANLGVDDVTFESLEFAQYLDLLEEGD-IAGPYRLGWTLSYPSAQESLEPMYHSQASRNYTGWGSDEFDERIAAANAADAD-EAVEAYQEAEDVLLEELPVLPLWFEDQHVVWSENIDNVHVTSRGLPQVERV 529
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A7W0YEA7_9ACTN (ABC transporter substrate-binding protein n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0YEA7_9ACTN) HSP 1 Score: 131 bits (330), Expect = 6.220e-33 Identity = 63/157 (40.13%), Postives = 99/157 (63.06%), Query Frame = 1
Query: 1 GTVTMYFNSGGGHEDWTQAVANTWLQDLGV-EVEFIAQEFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLFLSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENV 468
G + +FNS GGHE W +AV+N W Q+LG+ E++F + EF+ YL L + + V GP+RLGW+ D P+ +N+L PL E S N + Y +E+ DA IA+ AA S +G + A++++ DMP+ P +FG Q VH++ ++NV F + + +V
Sbjct: 383 GPLKFWFNSDGGHETWVEAVSNMWRQNLGIQEIQFESSEFADYLGSLDAGD-VDGPFRLGWVMDYPSPQNYLEPLHACEGSSNNTGYCNEEVDALIAEGNAAASIDEGIDSYLAAEDIILEDMPIIPTWFGLNQSVHSDRITNVQIDAFSFIRVADV 538
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A0W8IPP0_9MICC (Peptide ABC transporter n=18 Tax=Kocuria TaxID=57493 RepID=A0A0W8IPP0_9MICC) HSP 1 Score: 130 bits (327), Expect = 1.650e-32 Identity = 70/162 (43.21%), Postives = 100/162 (61.73%), Query Frame = 1
Query: 7 VTMYFNSGGGHEDWTQAVANTWLQDLGVEVEFIAQ-EFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLF----LSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFGYTELENVVVG 477
V ++FN+G GHE+W QAV N ++LGVE + +F+ YL Q ++G+ GP+R GW+ D P EN L P + L + N + Y +E+FDA + + AA S A +EA+++L ADMP AP+FFG Q H+ENVS+V FG E+E+VVVG
Sbjct: 382 VDLWFNAGAGHEEWMQAVGNQLRENLGVEYQLRGDLQFAEYLPK-QDEKGMTGPFRSGWIMDYPVMENMLGPTYSTAALPPAGSNVTFYSNEEFDAKLQEGNAADSIDAAIQAYQEAEDLLLADMPAAPLFFGLVQYAHSENVSDVYVNSFGRVEVEDVVVG 542
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Match: A0A5S5CSP7_9ACTN (Peptide/nickel transport system substrate-binding protein/oligopeptide transport system substrate-binding protein n=1 Tax=Blastococcus xanthinilyticus TaxID=1564164 RepID=A0A5S5CSP7_9ACTN) HSP 1 Score: 129 bits (324), Expect = 4.430e-32 Identity = 65/152 (42.76%), Postives = 96/152 (63.16%), Query Frame = 1
Query: 7 VTMYFNSGGGHEDWTQAVANTWLQDLGVEVEFIAQ-EFSPYLDVLQSDEGVLGPYRLGWLWDAPTAENFLSPLF----LSESSDNYSRYVSEDFDAAIADFRAAPSEVDGFGALEEAQNVLCADMPVAPIFFGRGQKVHTENVSNVVYTVFG 447
V ++FN+GGGHE+W QA+ N Q+LGVE + +F+ YL LQ +G+ GP+R GW+ D P AENFL PL+ L + N + Y + +FDAA+A+ AA +E + A + A+++L D+P AP+F+ Q H+ENV NVV +G
Sbjct: 385 VDLWFNAGGGHEEWMQAIGNQIRQNLGVEYQLRGDLQFAEYLP-LQDAQGMTGPFRSGWIMDYPVAENFLGPLYSTAALPPAGSNVTFYSNPEFDAALAEGNAAATEDESVAAYQAAEDILIEDLPAAPLFYRLNQGAHSENVRNVVIDAYG 535 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109828.2060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig109828.2060.1 >prot_M-pyrifera_M_contig109828.2060.1 ID=prot_M-pyrifera_M_contig109828.2060.1|Name=mRNA_M-pyrifera_M_contig109828.2060.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp MYFNSGGGHEDWTQAVANTWLQDLGVEVEFIAQEFSPYLDVLQSDEGVLGback to top mRNA from alignment at M-pyrifera_M_contig109828:5..484+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig109828.2060.1 ID=mRNA_M-pyrifera_M_contig109828.2060.1|Name=mRNA_M-pyrifera_M_contig109828.2060.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig109828:5..484+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig109828:5..484+ >mRNA_M-pyrifera_M_contig109828.2060.1 ID=mRNA_M-pyrifera_M_contig109828.2060.1|Name=mRNA_M-pyrifera_M_contig109828.2060.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig109828:5..484+ (Macrocystis pyrifera P11B4 male)back to top |