mRNA_M-pyrifera_M_contig109822.2052.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109822.2052.1
Unique NamemRNA_M-pyrifera_M_contig109822.2052.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A3D3R3S1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R3S1_9PLAN)

HSP 1 Score: 155 bits (392), Expect = 2.440e-45
Identity = 70/115 (60.87%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASAGSSQ 345
            WM LGVFALS + QT  ++ ++LAVD QGIIRGN+T++ +++TQ V GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVH G D T+QWLMVR+ QKD+  S+S  +S+
Sbjct:  118 WMPLGVFALSPSGQTKPDSTVELAVDAQGIIRGNFTDTKTNKTQQVEGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHIGKDETQQWLMVRITQKDKDKSSSTSASE 232          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A2D5GUD8_9PLAN (Protocadherin (Fragment) n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5GUD8_9PLAN)

HSP 1 Score: 155 bits (392), Expect = 2.810e-45
Identity = 70/115 (60.87%), Postives = 93/115 (80.87%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASAGSSQ 345
            WM LGVFALS + QT  ++ ++LAVD QGIIRGN+T++ +++TQ V GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVH G D T+QWLMVR+ QKD+  S+S  +S+
Sbjct:  123 WMPLGVFALSPSGQTKPDSTVELAVDAQGIIRGNFTDTKTNKTQQVEGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHIGKDETQQWLMVRITQKDKDKSSSTSASE 237          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A350KEJ2_9PLAN (Protocadherin (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KEJ2_9PLAN)

HSP 1 Score: 156 bits (394), Expect = 1.220e-44
Identity = 70/115 (60.87%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASAGSSQ 345
            WM LGVFALS + QT +++ ++LAVD QGIIRGN+T++ +++TQ V GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVH G D T+QWLMVR+ QKD+  S+S  +S+
Sbjct:  205 WMPLGVFALSPSGQTKSDSTVELAVDAQGIIRGNFTDTKTNKTQQVEGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHIGKDETQQWLMVRITQKDKDKSSSTSASE 319          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A517RD73_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RD73_9PLAN)

HSP 1 Score: 160 bits (405), Expect = 3.370e-44
Identity = 71/111 (63.96%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASA 333
            WM LGVFALS++ QT +++V++LAV+ QGIIRGNYTN+ + +TQ V GS+DK+++RA WT+G D NT++DTGIYNLTKDE P+LVH G D+T+QWLMVRLDQKD+  +A+A
Sbjct:  466 WMPLGVFALSESGQTKSDSVVELAVNSQGIIRGNYTNTKTKKTQQVQGSIDKKSQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHVGKDQTQQWLMVRLDQKDKDKNAAA 576          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A517Q894_9PLAN (Uncharacterized protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q894_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 5.480e-44
Identity = 71/114 (62.28%), Postives = 96/114 (84.21%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASAGSS 342
            WM LGVFALS + +T +N+V++LAVDK GI+RGNYT++ ++++Q + GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVH G D+TEQWLMVRL+QKD+  + +A SS
Sbjct:  477 WMPLGVFALSPSGETKSNSVVELAVDKDGILRGNYTDTKTNKSQQIQGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHIGKDKTEQWLMVRLNQKDKDSNKAATSS 590          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A517WWZ1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WWZ1_9PLAN)

HSP 1 Score: 157 bits (397), Expect = 2.940e-43
Identity = 70/104 (67.31%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKD 312
            WM LGVFALSQ+ QT +++V++LAV+KQGIIRGN+TN  + +TQ V GSVDK+T+R  WT+G+D NTI+DTG+YNLTK+E P+LVH G D T+QWLMVRLDQKD
Sbjct:  428 WMPLGVFALSQSGQTKSDSVVELAVNKQGIIRGNFTNEKTKKTQQVQGSVDKKTQRVAWTVGNDKNTIYDTGVYNLTKEEAPLLVHIGKDETQQWLMVRLDQKD 531          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A2E2BV59_9PLAN (Protocadherin n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BV59_9PLAN)

HSP 1 Score: 154 bits (390), Expect = 4.200e-43
Identity = 69/104 (66.35%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKD 312
            WM LGVFALS + QT +++V++LAVD  GIIRGNYT++ +++TQ V GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVHTG D T+QWLMVR+ QKD
Sbjct:  301 WMPLGVFALSPSGQTKSDSVVELAVDANGIIRGNYTDTKTNKTQQVQGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHTGKDETQQWLMVRITQKD 404          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A517VAV5_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517VAV5_9PLAN)

HSP 1 Score: 155 bits (392), Expect = 2.830e-42
Identity = 69/115 (60.00%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASAGSSQ 345
            WM LGVFALS + QT +++ ++LAVD +GIIRGNYT++ +++TQ + GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVH G D T+QWLMVR+ QKD+  S+S  +S+
Sbjct:  476 WMPLGVFALSPSGQTRSDSTVELAVDAKGIIRGNYTDTKTNKTQQIQGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHIGKDETQQWLMVRITQKDKDKSSSTSASE 590          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A2E7KFR7_9PLAN (Protocadherin n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KFR7_9PLAN)

HSP 1 Score: 153 bits (386), Expect = 3.850e-42
Identity = 68/114 (59.65%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASAGSS 342
            WM LGVFALS   +T ++ V++LAV+K GI+RGN+T++ + +TQ + GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVH G ++TEQWLMVRLDQKD+    S+ S+
Sbjct:  350 WMPLGVFALSPTGETKSDNVVELAVNKDGILRGNFTDTKTKKTQQIQGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHIGKEKTEQWLMVRLDQKDKNTDGSSTST 463          
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Match: A0A517PKQ1_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PKQ1_9PLAN)

HSP 1 Score: 153 bits (386), Expect = 2.000e-41
Identity = 68/114 (59.65%), Postives = 92/114 (80.70%), Query Frame = 1
Query:    1 WMSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVDKQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLDQKDQTGSASAGSS 342
            WM LGVFALS   +T ++ V++LAV+K GI+RGN+T++ + +TQ + GSVDK+T+RA WT+G D NT++DTGIYNLTKDE P+LVH G ++TEQWLMVRLDQKD+    S+ S+
Sbjct:  472 WMPLGVFALSPTGETKSDNVVELAVNKDGILRGNFTDTKTKKTQQIQGSVDKKTQRAAWTVGDDKNTVYDTGIYNLTKDEAPLLVHIGKEKTEQWLMVRLDQKDKNTDGSSTST 585          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109822.2052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D3R3S1_9PLAN2.440e-4560.87Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A2D5GUD8_9PLAN2.810e-4560.87Protocadherin (Fragment) n=3 Tax=Planctomycetaceae... [more]
A0A350KEJ2_9PLAN1.220e-4460.87Protocadherin (Fragment) n=1 Tax=Planctomycetaceae... [more]
A0A517RD73_9PLAN3.370e-4463.96Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517Q894_9PLAN5.480e-4462.28Uncharacterized protein n=6 Tax=Gimesia panareensi... [more]
A0A517WWZ1_9PLAN2.940e-4367.31Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2E2BV59_9PLAN4.200e-4366.35Protocadherin n=2 Tax=Planctomycetaceae TaxID=126 ... [more]
A0A517VAV5_9PLAN2.830e-4260.00Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A2E7KFR7_9PLAN3.850e-4259.65Protocadherin n=1 Tax=Gimesia sp. TaxID=2024833 Re... [more]
A0A517PKQ1_9PLAN2.000e-4159.65Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109822contigM-pyrifera_M_contig109822:3..350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score131.0
Seed ortholog evalue3.7e-28
Seed eggNOG ortholog314230.DSM3645_26374
KEGG koko:K12092
KEGG TC3.A.7.12.1
KEGG Pathwayko05120,map05120
KEGG ModuleM00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein ubiquitination
EggNOG OGs2IX3Y@203682,COG5183@1,COG5183@2
COG Functional cat.A
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size348
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.7343998-UTR-M-pyrifera_M_contig109822:2..51622815608.7343998-UTR-M-pyrifera_M_contig109822:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109822 3..5 +
1692277485.561971-UTR-M-pyrifera_M_contig109822:2..51692277485.561971-UTR-M-pyrifera_M_contig109822:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109822 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.747922-CDS-M-pyrifera_M_contig109822:5..3501622815608.747922-CDS-M-pyrifera_M_contig109822:5..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109822 6..350 +
1692277485.5743868-CDS-M-pyrifera_M_contig109822:5..3501692277485.5743868-CDS-M-pyrifera_M_contig109822:5..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109822 6..350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109822.2052.1prot_M-pyrifera_M_contig109822.2052.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109822 6..350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109822.2052.1

>prot_M-pyrifera_M_contig109822.2052.1 ID=prot_M-pyrifera_M_contig109822.2052.1|Name=mRNA_M-pyrifera_M_contig109822.2052.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MSLGVFALSQANQTSANAVIQLAVDKQGIIRGNYTNSTSSQTQVVHGSVD
KQTERACWTIGSDNNTIFDTGIYNLTKDETPVLVHTGDDRTEQWLMVRLD
QKDQTGSASAGSSQ*
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mRNA from alignment at M-pyrifera_M_contig109822:3..350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109822.2052.1 ID=mRNA_M-pyrifera_M_contig109822.2052.1|Name=mRNA_M-pyrifera_M_contig109822.2052.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig109822:3..350+ (Macrocystis pyrifera P11B4 male)
TGGATGTCGCTGGGCGTCTTTGCCTTGAGTCAGGCCAATCAGACATCAGC CAACGCGGTCATTCAACTCGCAGTGGACAAGCAGGGCATCATTCGCGGGA ACTACACGAACTCAACCTCGAGTCAGACTCAGGTGGTCCACGGCTCGGTC GACAAGCAAACAGAGCGAGCCTGCTGGACGATCGGCAGCGACAACAACAC GATTTTCGACACAGGGATCTATAACCTGACGAAAGACGAAACGCCCGTGC TTGTTCACACCGGTGATGATCGCACAGAGCAGTGGTTGATGGTTCGGCTG GATCAGAAAGATCAGACCGGTTCCGCATCGGCAGGCTCATCTCAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109822:3..350+

>mRNA_M-pyrifera_M_contig109822.2052.1 ID=mRNA_M-pyrifera_M_contig109822.2052.1|Name=mRNA_M-pyrifera_M_contig109822.2052.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig109822:3..350+ (Macrocystis pyrifera P11B4 male)
ATGTCGCTGGGCGTCTTTGCCTTGAGTCAGGCCAATCAGACATCAGCCAA
CGCGGTCATTCAACTCGCAGTGGACAAGCAGGGCATCATTCGCGGGAACT
ACACGAACTCAACCTCGAGTCAGACTCAGGTGGTCCACGGCTCGGTCGAC
AAGCAAACAGAGCGAGCCTGCTGGACGATCGGCAGCGACAACAACACGAT
TTTCGACACAGGGATCTATAACCTGACGAAAGACGAAACGCCCGTGCTTG
TTCACACCGGTGATGATCGCACAGAGCAGTGGTTGATGGTTCGGCTGGAT
CAGAAAGATCAGACCGGTTCCGCATCGGCAGGCTCATCTCAATAGATGTC
GCTGGGCGTCTTTGCCTTGAGTCAGGCCAATCAGACATCAGCCAACGCGG
TCATTCAACTCGCAGTGGACAAGCAGGGCATCATTCGCGGGAACTACACG
AACTCAACCTCGAGTCAGACTCAGGTGGTCCACGGCTCGGTCGACAAGCA
AACAGAGCGAGCCTGCTGGACGATCGGCAGCGACAACAACACGATTTTCG
ACACAGGGATCTATAACCTGACGAAAGACGAAACGCCCGTGCTTGTTCAC
ACCGGTGATGATCGCACAGAGCAGTGGTTGATGGTTCGGCTGGATCAGAA
AGATCAGACCGGTTCCGCATCGGCAGGCTCATCTCAATAG
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