mRNA_M-pyrifera_M_contig109817.2051.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109817.2051.1
Unique NamemRNA_M-pyrifera_M_contig109817.2051.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A8C5A9Z5_GADMO (Deoxycytidine kinase-like n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5A9Z5_GADMO)

HSP 1 Score: 90.9 bits (224), Expect = 3.550e-20
Identity = 45/90 (50.00%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 SLAGNIGAGKSTLLRLLSTRL-NFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            S+ GNI AGKSTL+R+L  RL ++ VVPEP+ KW ++++  D+  +D    +++SQ+ G N+L   Y DP RWS+TFQSYAFLSR++A +
Sbjct:   25 SIEGNIAAGKSTLVRVLGDRLEDWEVVPEPIGKWCSLQNKADDVNQD----LSSSQKSGGNILQMMYTDPRRWSYTFQSYAFLSRIRAQL 110          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: V8NYE6_OPHHA (Deoxycytidine kinase (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8NYE6_OPHHA)

HSP 1 Score: 87.0 bits (214), Expect = 1.470e-19
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 RSHPSSFHFSLAGNIGAGKSTLLRLLS-TRLNFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            RS  S    ++ GNI AGKST + +L   R  + VVPEPV+KW  V+D+ D+ EE     +T+SQ+ G NLL   Y  P RWSFTFQ+YA LSR++A +
Sbjct:    7 RSRSSVKKIAIEGNIAAGKSTFVNILKKAREEWEVVPEPVAKWCNVQDSHDDSEE-----LTSSQKSGGNLLQMMYEKPERWSFTFQAYACLSRIRAQV 100          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A7S0PDI2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PDI2_CAFRO)

HSP 1 Score: 88.2 bits (217), Expect = 5.430e-19
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   28 SLAGNIGAGKSTLLRLLSTR-LNFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            ++ GNI AGKST LR+L+   L F VVPEP+SKW  +   DD     E P V+ASQ+ G N+L +FY+D  RW+FTFQ+YAFLSR++A +
Sbjct:   11 AIEGNIAAGKSTFLRILAEAGLGFFVVPEPLSKWQGIPADDDV----EMP-VSASQDAGMNILDKFYSDQERWAFTFQTYAFLSRLRAQL 95          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A670ZUP0_PSETE (Deoxycytidine kinase n=9 Tax=Colubroidea TaxID=34989 RepID=A0A670ZUP0_PSETE)

HSP 1 Score: 86.3 bits (212), Expect = 1.800e-18
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 RSHPSSFHFSLAGNIGAGKSTLLRLLS-TRLNFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            RS  +    ++ GNI AGKST + +L   R  + VVPEP++KW  V+D+ D+ EE     +TASQ+ G NLL   Y  P RWSFTFQ+YA LSR++A +
Sbjct:    7 RSRSTVKKIAIEGNIAAGKSTFVNILKKAREEWEVVPEPLAKWCNVQDSHDDSEE-----LTASQKSGGNLLQMMYEKPERWSFTFQAYACLSRIRAQL 100          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A5A8DUI2_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUI2_CAFRO)

HSP 1 Score: 88.2 bits (217), Expect = 2.250e-18
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   28 SLAGNIGAGKSTLLRLLSTR-LNFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            ++ GNI AGKST LR+L+   L F VVPEP+SKW  +   DD     E P V+ASQ+ G N+L +FY+D  RW+FTFQ+YAFLSR++A +
Sbjct:    6 AIEGNIAAGKSTFLRILAEAGLGFFVVPEPLSKWQGIPADDDV----EMP-VSASQDAGMNILDKFYSDQERWAFTFQTYAFLSRLRAQL 90          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A7J6A3F4_AMEME (dNK domain-containing protein n=3 Tax=Siluroidei TaxID=1489793 RepID=A0A7J6A3F4_AMEME)

HSP 1 Score: 85.5 bits (210), Expect = 4.160e-18
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   28 SLAGNIGAGKSTLLRLLSTRLN-FVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            S+ GNI AGKST +RLL      + V+PEP+ KW  V+ TD+E EE     +T SQ+ G NLL   Y  P RWS+TFQ+YA LSRV+A +
Sbjct:   26 SIEGNIAAGKSTFVRLLERESEEWEVIPEPIGKWCNVQTTDNEFEE-----LTTSQKSGGNLLQMLYDKPSRWSYTFQTYACLSRVRAQL 110          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A7S3GKR2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GKR2_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 9.480e-18
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    7 HPSSFHFSLAGNIGAGKSTLLRLLSTRLNFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            HP     ++ GNI AGKST L++L   ++FVVVPEP+++W  V    DEG        T SQ  G NLL  FY +P RWS+TFQSYAF+SR++A M
Sbjct:   96 HPM-LKIAIEGNIAAGKSTFLKILEKEVDFVVVPEPLARWQNV--GADEG--------TFSQFHGGNLLDLFYKEPHRWSYTFQSYAFMSRMRAQM 180          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: H0V314_CAVPO (Deoxycytidine kinase n=23 Tax=Eutheria TaxID=9347 RepID=H0V314_CAVPO)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-17
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   28 SLAGNIGAGKSTLLRLLSTRL-NFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            S+ GNI AGKST + +L     ++VVVPEPV++W  V+ T DE EE     +T SQ+ G N+L   Y  P RWSFTFQSYA LSR++A +
Sbjct:   25 SVEGNIAAGKSTFVNILKQVCEDWVVVPEPVARWCNVQSTQDEFEE-----LTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQL 109          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A6I9KJX1_CHRAS (deoxycytidine kinase n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9KJX1_CHRAS)

HSP 1 Score: 84.3 bits (207), Expect = 1.110e-17
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   28 SLAGNIGAGKSTLLRLLSTRL-NFVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            S+ GNIGAGKST + +L     ++ VVPEPV++W  V+ T DE EE     +T SQ+ G N+L   Y  P RWSFTFQSYA LSR++A +
Sbjct:   25 SMEGNIGAGKSTFVNILKQICEDWEVVPEPVARWCNVQTTQDEFEE-----LTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQL 109          
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Match: A0A5N5M102_PANHP (dNK domain-containing protein n=5 Tax=Characiphysae TaxID=186628 RepID=A0A5N5M102_PANHP)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-17
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   28 SLAGNIGAGKSTLLRLLSTRLN-FVVVPEPVSKWTAVEDTDDEGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM 294
            S+ GNI AGKST +RLL      + V+PEP+ KW  V+ T++E EE     +T SQ+ G NLL   Y  P RWS+TFQ+YA LSRV+A +
Sbjct:   26 SIEGNIAAGKSTFVRLLERETEEWEVIPEPIGKWCNVQTTENEYEE-----LTTSQKSGGNLLQMLYDKPSRWSYTFQTYACLSRVRAQL 110          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109817.2051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C5A9Z5_GADMO3.550e-2050.00Deoxycytidine kinase-like n=1 Tax=Gadus morhua Tax... [more]
V8NYE6_OPHHA1.470e-1948.48Deoxycytidine kinase (Fragment) n=1 Tax=Ophiophagu... [more]
A0A7S0PDI2_CAFRO5.430e-1953.33Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A670ZUP0_PSETE1.800e-1847.47Deoxycytidine kinase n=9 Tax=Colubroidea TaxID=349... [more]
A0A5A8DUI2_CAFRO2.250e-1853.33Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7J6A3F4_AMEME4.160e-1851.11dNK domain-containing protein n=3 Tax=Siluroidei T... [more]
A0A7S3GKR2_9EUKA9.480e-1850.00Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
H0V314_CAVPO1.080e-1751.11Deoxycytidine kinase n=23 Tax=Eutheria TaxID=9347 ... [more]
A0A6I9KJX1_CHRAS1.110e-1751.11deoxycytidine kinase n=1 Tax=Chrysochloris asiatic... [more]
A0A5N5M102_PANHP1.140e-1750.00dNK domain-containing protein n=5 Tax=Characiphysa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109817contigM-pyrifera_M_contig109817:309..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score83.6
Seed ortholog evalue5.7e-14
Seed eggNOG ortholog8010.XP_010869531.1
KEGG rclassRC00002,RC00017
KEGG koko:K00893
KEGG ReactionR00185,R01666
KEGG Pathwayko00230,ko00240,ko01100,map00230,map00240,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zgc 110540
EggNOG OGs38G0J@33154,3BMYY@33208,3CW87@33213,48CRT@7711,4952G@7742,4A08Z@7898,COG1428@1,KOG4235@2759
EC2.7.1.74
COG Functional cat.F
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.667114-CDS-M-pyrifera_M_contig109817:308..6021622815608.667114-CDS-M-pyrifera_M_contig109817:308..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109817 309..602 +
1692277485.5455775-CDS-M-pyrifera_M_contig109817:308..6021692277485.5455775-CDS-M-pyrifera_M_contig109817:308..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109817 309..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109817.2051.1prot_M-pyrifera_M_contig109817.2051.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109817 309..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109817.2051.1

>prot_M-pyrifera_M_contig109817.2051.1 ID=prot_M-pyrifera_M_contig109817.2051.1|Name=mRNA_M-pyrifera_M_contig109817.2051.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
RSHPSSFHFSLAGNIGAGKSTLLRLLSTRLNFVVVPEPVSKWTAVEDTDD
EGEEDEAPLVTASQEDGANLLARFYADPCRWSFTFQSYAFLSRVKASM
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mRNA from alignment at M-pyrifera_M_contig109817:309..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109817.2051.1 ID=mRNA_M-pyrifera_M_contig109817.2051.1|Name=mRNA_M-pyrifera_M_contig109817.2051.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig109817:309..602+ (Macrocystis pyrifera P11B4 male)
CGCTCTCATCCTTCTTCTTTCCATTTTTCTCTTGCAGGGAACATTGGAGC GGGCAAGTCTACATTGTTACGTCTTCTGTCGACACGTCTGAACTTTGTCG TAGTGCCCGAACCTGTCTCCAAATGGACTGCTGTGGAGGATACGGACGAC GAAGGTGAGGAGGATGAAGCACCTCTTGTGACGGCATCACAGGAAGATGG AGCCAATCTGTTGGCTCGCTTCTATGCAGACCCTTGCCGTTGGTCGTTCA CCTTCCAAAGCTACGCGTTCTTGAGTCGCGTAAAAGCAAGCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109817:309..602+

>mRNA_M-pyrifera_M_contig109817.2051.1 ID=mRNA_M-pyrifera_M_contig109817.2051.1|Name=mRNA_M-pyrifera_M_contig109817.2051.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig109817:309..602+ (Macrocystis pyrifera P11B4 male)
CGCTCTCATCCTTCTTCTTTCCATTTTTCTCTTGCAGGGAACATTGGAGC
GGGCAAGTCTACATTGTTACGTCTTCTGTCGACACGTCTGAACTTTGTCG
TAGTGCCCGAACCTGTCTCCAAATGGACTGCTGTGGAGGATACGGACGAC
GAAGGTGAGGAGGATGAAGCACCTCTTGTGACGGCATCACAGGAAGATGG
AGCCAATCTGTTGGCTCGCTTCTATGCAGACCCTTGCCGTTGGTCGTTCA
CCTTCCAAAGCTACGCGTTCTTGAGTCGCGTAAAAGCAAGCATGCGCTCT
CATCCTTCTTCTTTCCATTTTTCTCTTGCAGGGAACATTGGAGCGGGCAA
GTCTACATTGTTACGTCTTCTGTCGACACGTCTGAACTTTGTCGTAGTGC
CCGAACCTGTCTCCAAATGGACTGCTGTGGAGGATACGGACGACGAAGGT
GAGGAGGATGAAGCACCTCTTGTGACGGCATCACAGGAAGATGGAGCCAA
TCTGTTGGCTCGCTTCTATGCAGACCCTTGCCGTTGGTCGTTCACCTTCC
AAAGCTACGCGTTCTTGAGTCGCGTAAAAGCAAGCATG
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