mRNA_M-pyrifera_M_contig109812.2048.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109812.2048.1
Unique NamemRNA_M-pyrifera_M_contig109812.2048.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109812.2048.1 vs. uniprot
Match: A0A0D2X5H7_CAPO3 (RRM domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X5H7_CAPO3)

HSP 1 Score: 50.4 bits (119), Expect = 4.590e-5
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:    1 LAVGGLETEEDVRAVADRVCKLAKREQLFLDILRDDDTGEYRGFAYLSLSDGDLDELLAALKQLNGATWRGRTMHIGLAREDYLAKLRREHEEA 282
            L VGGL  E     V +R       + +   ++RD +TGE RGFAYL + D   + L   +     A W+G+ + + LA+E  L +L+RE EEA
Sbjct:   57 LYVGGLPLEVSEHDVQERFKSFGAVKAV--QLIRDHETGESRGFAYLDV-DYTENSLKKCMSVYANARWKGKLVRVQLAKESVLVRLQREREEA 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109812.2048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0D2X5H7_CAPO34.590e-536.17RRM domain-containing protein n=1 Tax=Capsaspora o... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109812contigM-pyrifera_M_contig109812:318..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.5098097-CDS-M-pyrifera_M_contig109812:317..6021622815608.5098097-CDS-M-pyrifera_M_contig109812:317..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109812 318..602 +
1692277485.4788835-CDS-M-pyrifera_M_contig109812:317..6021692277485.4788835-CDS-M-pyrifera_M_contig109812:317..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109812 318..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109812.2048.1prot_M-pyrifera_M_contig109812.2048.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109812 318..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109812.2048.1

>prot_M-pyrifera_M_contig109812.2048.1 ID=prot_M-pyrifera_M_contig109812.2048.1|Name=mRNA_M-pyrifera_M_contig109812.2048.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
LAVGGLETEEDVRAVADRVCKLAKREQLFLDILRDDDTGEYRGFAYLSLS
DGDLDELLAALKQLNGATWRGRTMHIGLAREDYLAKLRREHEEAL
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mRNA from alignment at M-pyrifera_M_contig109812:318..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109812.2048.1 ID=mRNA_M-pyrifera_M_contig109812.2048.1|Name=mRNA_M-pyrifera_M_contig109812.2048.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig109812:318..602+ (Macrocystis pyrifera P11B4 male)
CTTGCAGTGGGAGGATTGGAGACAGAAGAAGATGTTCGTGCTGTTGCGGA
TCGTGTTTGCAAGTTGGCGAAACGAGAGCAACTTTTCTTGGATATTCTAC
GAGATGATGATACAGGGGAATATCGTGGATTTGCGTACCTGTCCTTGTCA
GATGGAGATTTGGATGAATTGTTGGCAGCGTTAAAACAGTTGAATGGGGC
CACATGGCGTGGTCGTACTATGCATATTGGATTAGCACGTGAAGATTACT
TAGCAAAGTTGCGTCGTGAGCATGAAGAAGCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109812:318..602+

>mRNA_M-pyrifera_M_contig109812.2048.1 ID=mRNA_M-pyrifera_M_contig109812.2048.1|Name=mRNA_M-pyrifera_M_contig109812.2048.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig109812:318..602+ (Macrocystis pyrifera P11B4 male)
CTTGCAGTGGGAGGATTGGAGACAGAAGAAGATGTTCGTGCTGTTGCGGA
TCGTGTTTGCAAGTTGGCGAAACGAGAGCAACTTTTCTTGGATATTCTAC
GAGATGATGATACAGGGGAATATCGTGGATTTGCGTACCTGTCCTTGTCA
GATGGAGATTTGGATGAATTGTTGGCAGCGTTAAAACAGTTGAATGGGGC
CACATGGCGTGGTCGTACTATGCATATTGGATTAGCACGTGAAGATTACT
TAGCAAAGTTGCGTCGTGAGCATGAAGAAGCGCTGCTTGCAGTGGGAGGA
TTGGAGACAGAAGAAGATGTTCGTGCTGTTGCGGATCGTGTTTGCAAGTT
GGCGAAACGAGAGCAACTTTTCTTGGATATTCTACGAGATGATGATACAG
GGGAATATCGTGGATTTGCGTACCTGTCCTTGTCAGATGGAGATTTGGAT
GAATTGTTGGCAGCGTTAAAACAGTTGAATGGGGCCACATGGCGTGGTCG
TACTATGCATATTGGATTAGCACGTGAAGATTACTTAGCAAAGTTGCGTC
GTGAGCATGAAGAAGCGCTG
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