mRNA_M-pyrifera_M_contig109803.2045.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109803.2045.1
Unique NamemRNA_M-pyrifera_M_contig109803.2045.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109803.2045.1 vs. uniprot
Match: UPI000644E4B4 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E4B4)

HSP 1 Score: 61.6 bits (148), Expect = 9.130e-8
Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 1 
Query:   10 NAAFSALLAGLDLEVSWDPTQRAFVATNAGEAIKWVLLVTTIALLAQLAEFYLWLYREKRE---SLRAEG---------RSGVVTPLRWWYGVLEALICALTPLPHSLLGAAS----ERISLLVFLRLYLLGRVFHRFSPAYRLRKRVWELCQQGGGTVGEQVNRV--RFDVWLSLKTMFDSQPLAVVLVLLAATYFPLAFGIYVQER 579
            N      L  ++L+VSW+  ++  V   + +  + ++  ++I LL QL ++Y  L         + RA G         RS  + PL W     E LI  L P+P +  G        +  LL++LR+Y+ GRVF  FS  Y++R  +    ++         N V  +F+  LS+KTM   +PLA  + +     F  +  IYV ER
Sbjct:   54 NGVIGIALMIVELQVSWNSEKKILVLDTSSKWFRGIIFFSSILLLCQLMDYYRLLLSNVTHGWLTKRARGFRVTPLNVLRSTQMAPLFW----TEVLITILQPIPFAS-GQVQLWNDPKWGLLMWLRIYMFGRVFRDFSHVYKIRHSIVAKYREK--------NEVPPKFNWALSMKTMLYQRPLATFIPITLLIIFICSHIIYVFER 248
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BLAST of mRNA_M-pyrifera_M_contig109803.2045.1 vs. uniprot
Match: UPI000644E02C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E02C)

HSP 1 Score: 58.5 bits (140), Expect = 1.030e-6
Identity = 55/210 (26.19%), Postives = 98/210 (46.67%), Query Frame = 1 
Query:    1 LATNAAFSALLAGLDLEVSWDPTQRAFVATNAGEAIKWVLLVTTIALLAQLAEFYLWLYREKRE---SLRAEG---------RSGVVTPLRWWYGVLEALICALTPLPHS---LLGAASERISLLVFLRLYLLGRVFHRFSPAYRLRKRVWELCQQGGGTVGEQVNRV--RFDVWLSLKTMFDSQPLAVVLVLLAATYFPLAFGIYVQER 579
            ++ N     +L  ++L++SW+ T    +     +A++  +  +T+ LL QL ++Y  L         + RA G         RS  + PL W     E +IC + P+P +   +      +  LL++LR+Y+ GR++  FS  YR+R+++ +  +          N V  +F+  LSLKT+   +PL   +       F  +  IYV ER
Sbjct:   53 ISLNGLTGIILMIVELQLSWNGTS--LLIDGRTKALRMTIFFSTLVLLCQLMDYYRLLLSHVTHGWMTKRARGFRVTPLNVLRSTTLAPLFW----TEVIICLVQPIPFASGPIHVWNDPKWGLLMWLRIYMFGRLYRDFSRVYRIRQKITDKYKAK--------NEVPPKFNWSLSLKTLLYQRPLMTFIPFTLFIIFICSHIIYVFER 248
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109803.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000644E4B49.130e-828.37hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI000644E02C1.030e-626.19hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109803contigM-pyrifera_M_contig109803:23..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.3700936-CDS-M-pyrifera_M_contig109803:22..6011622815608.3700936-CDS-M-pyrifera_M_contig109803:22..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109803 23..601 -
1692277485.4246347-CDS-M-pyrifera_M_contig109803:22..6011692277485.4246347-CDS-M-pyrifera_M_contig109803:22..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109803 23..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109803.2045.1prot_M-pyrifera_M_contig109803.2045.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109803 23..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109803.2045.1

>prot_M-pyrifera_M_contig109803.2045.1 ID=prot_M-pyrifera_M_contig109803.2045.1|Name=mRNA_M-pyrifera_M_contig109803.2045.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
LATNAAFSALLAGLDLEVSWDPTQRAFVATNAGEAIKWVLLVTTIALLAQ
LAEFYLWLYREKRESLRAEGRSGVVTPLRWWYGVLEALICALTPLPHSLL
GAASERISLLVFLRLYLLGRVFHRFSPAYRLRKRVWELCQQGGGTVGEQV
NRVRFDVWLSLKTMFDSQPLAVVLVLLAATYFPLAFGIYVQER
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mRNA from alignment at M-pyrifera_M_contig109803:23..601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109803.2045.1 ID=mRNA_M-pyrifera_M_contig109803.2045.1|Name=mRNA_M-pyrifera_M_contig109803.2045.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig109803:23..601- (Macrocystis pyrifera P11B4 male)
CTAGCGACCAACGCCGCCTTTTCTGCGCTCCTGGCAGGCCTGGACCTCGA
GGTGTCCTGGGATCCCACGCAGCGGGCCTTTGTGGCCACGAATGCAGGGG
AGGCCATCAAGTGGGTGCTGCTGGTGACCACGATCGCCCTACTGGCTCAA
CTCGCCGAGTTTTATCTGTGGCTGTACCGTGAAAAACGCGAATCCCTGCG
TGCAGAGGGCCGCAGTGGGGTGGTCACGCCGCTTCGGTGGTGGTATGGCG
TGCTGGAAGCGCTGATATGCGCCCTCACCCCTCTACCCCACTCGCTCCTG
GGTGCTGCCAGCGAACGCATCTCCCTCCTCGTTTTCTTGCGTCTCTACCT
GCTGGGCAGAGTGTTCCACCGCTTCTCCCCGGCCTACAGGCTGCGAAAGC
GCGTGTGGGAGCTGTGCCAGCAAGGTGGGGGAACTGTGGGGGAGCAGGTG
AATCGGGTTCGATTCGACGTGTGGTTGAGTCTCAAGACCATGTTCGATTC
CCAGCCTCTCGCGGTGGTTCTCGTCCTCCTTGCCGCCACTTACTTCCCGC
TGGCCTTTGGCATTTATGTGCAGGAGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109803:23..601-

>mRNA_M-pyrifera_M_contig109803.2045.1 ID=mRNA_M-pyrifera_M_contig109803.2045.1|Name=mRNA_M-pyrifera_M_contig109803.2045.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig109803:23..601- (Macrocystis pyrifera P11B4 male)
CTAGCGACCAACGCCGCCTTTTCTGCGCTCCTGGCAGGCCTGGACCTCGA
GGTGTCCTGGGATCCCACGCAGCGGGCCTTTGTGGCCACGAATGCAGGGG
AGGCCATCAAGTGGGTGCTGCTGGTGACCACGATCGCCCTACTGGCTCAA
CTCGCCGAGTTTTATCTGTGGCTGTACCGTGAAAAACGCGAATCCCTGCG
TGCAGAGGGCCGCAGTGGGGTGGTCACGCCGCTTCGGTGGTGGTATGGCG
TGCTGGAAGCGCTGATATGCGCCCTCACCCCTCTACCCCACTCGCTCCTG
GGTGCTGCCAGCGAACGCATCTCCCTCCTCGTTTTCTTGCGTCTCTACCT
GCTGGGCAGAGTGTTCCACCGCTTCTCCCCGGCCTACAGGCTGCGAAAGC
GCGTGTGGGAGCTGTGCCAGCAAGGTGGGGGAACTGTGGGGGAGCAGGTG
AATCGGGTTCGATTCGACGTGTGGTTGAGTCTCAAGACCATGTTCGATTC
CCAGCCTCTCGCGGTGGTTCTCGTCCTCCTTGCCGCCACTTACTTCCCGC
TGGCCTTTGGCATTTATGTGCAGGAGCGACTAGCGACCAACGCCGCCTTT
TCTGCGCTCCTGGCAGGCCTGGACCTCGAGGTGTCCTGGGATCCCACGCA
GCGGGCCTTTGTGGCCACGAATGCAGGGGAGGCCATCAAGTGGGTGCTGC
TGGTGACCACGATCGCCCTACTGGCTCAACTCGCCGAGTTTTATCTGTGG
CTGTACCGTGAAAAACGCGAATCCCTGCGTGCAGAGGGCCGCAGTGGGGT
GGTCACGCCGCTTCGGTGGTGGTATGGCGTGCTGGAAGCGCTGATATGCG
CCCTCACCCCTCTACCCCACTCGCTCCTGGGTGCTGCCAGCGAACGCATC
TCCCTCCTCGTTTTCTTGCGTCTCTACCTGCTGGGCAGAGTGTTCCACCG
CTTCTCCCCGGCCTACAGGCTGCGAAAGCGCGTGTGGGAGCTGTGCCAGC
AAGGTGGGGGAACTGTGGGGGAGCAGGTGAATCGGGTTCGATTCGACGTG
TGGTTGAGTCTCAAGACCATGTTCGATTCCCAGCCTCTCGCGGTGGTTCT
CGTCCTCCTTGCCGCCACTTACTTCCCGCTGGCCTTTGGCATTTATGTGC
AGGAGCGA
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