mRNA_M-pyrifera_M_contig109792.2043.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109792.2043.1
Unique NamemRNA_M-pyrifera_M_contig109792.2043.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109792.2043.1 vs. uniprot
Match: I7MEP7_TETTS (Transmembrane protein, putative n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MEP7_TETTS)

HSP 1 Score: 90.5 bits (223), Expect = 4.840e-19
Identity = 43/135 (31.85%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:   19 YASNACCNENQNADLVNNFILIDAVFGG---ECEACAQNLKRFWCSFVCSPQQADHM----RFLRYANHTGLYGDKKLCMEVTLDIDPEYMCGVYASCNGVSFVAETAIMSTALGFFQYQGQQGAAEHGEWIEFN 402
            Y    CCN+ QN  + +NF+ IDA FG     C+ CA NLKRFWC++ C P Q+D +    + +   N            +V++ +D + +C V++SCN   +  + + M T  GF  +QG     +  + I  N
Sbjct:   59 YTGATCCNDYQNNQMASNFLQIDATFGSIGNGCDNCASNLKRFWCTYTCDPNQSDFVVIGPKPIVVPNPIDEGATTLTVQDVSILVDSQTVCDVWSSCNLTPYATQVSAMKTPAGFLSFQGANAVTQAAQSIRVN 193
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BLAST of mRNA_M-pyrifera_M_contig109792.2043.1 vs. uniprot
Match: A0A1R2B7W7_9CILI (NPC1_N domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B7W7_9CILI)

HSP 1 Score: 85.9 bits (211), Expect = 1.770e-17
Identity = 47/136 (34.56%), Postives = 66/136 (48.53%), Query Frame = 1 
Query:    7 ACPQYAS-NACCNENQNADLVNNFILIDAVFG---GECEACAQNLKRFWCSFVCSPQQADHMRFLRYAN-HTGLYGDKKLCMEVTLDIDPEYMCGVYASCNGVSFVAETAIMSTALGFFQYQGQQGAAEHGEWIEF 399
            ACP +A  + CCN +QN  ++  F L+D+ FG   G C+ CA NLKR WC F CSP QAD +     A   + + G           +     C +Y SC    +V E + M +  GF ++QG +G      W  F
Sbjct:   66 ACPMFAGEDVCCNNDQNLQMLYKFSLLDSTFGSQVGGCDICAANLKRLWCYFTCSPNQADFVSAGPQAIVPSPIDGHMMQIFLNNFTVTKSLSCELYNSCQKCPYVTEVSAMQSPEGFLEFQGYEGIPIGLLWTTF 201
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BLAST of mRNA_M-pyrifera_M_contig109792.2043.1 vs. uniprot
Match: A0A0D7A4W8_9AGAR (Multidrug efflux transporter AcrB transmembrane domain-containing protein n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7A4W8_9AGAR)

HSP 1 Score: 55.5 bits (132), Expect = 3.080e-6
Identity = 31/103 (30.10%), Postives = 43/103 (41.75%), Query Frame = 1 
Query:   34 CCNENQNADLVNNFILIDAVFGGECEACAQNLKRFWCSFVCSPQQADHMRFLRYANHTGLYGDKKLCMEVTLDIDPEYMCGVYASCNGVSFVAETAIMSTALG 342
            CC   Q   L +NF  +D +    C AC  N + F+C+F CSP QA   +FL   +       +     +   +DP Y  G Y SC  V   A        +G
Sbjct:   57 CCTSEQLTTLQDNFNTVDNLLSS-CPACRNNFRSFFCTFTCSPNQA---QFLHVTSTQTTSTGQTAVKSLDFFVDPHYGAGFYNSCKDVQVGATNGYAIDLMG 155
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109792.2043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
I7MEP7_TETTS4.840e-1931.85Transmembrane protein, putative n=1 Tax=Tetrahymen... [more]
A0A1R2B7W7_9CILI1.770e-1734.56NPC1_N domain-containing protein n=1 Tax=Stentor c... [more]
A0A0D7A4W8_9AGAR3.080e-630.10Multidrug efflux transporter AcrB transmembrane do... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109792contigM-pyrifera_M_contig109792:198..602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog112098.XP_008614095.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Niemann-Pick C1 N terminus
EggNOG OGs28I52@1,2QQFF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.2935565-CDS-M-pyrifera_M_contig109792:197..6021622815608.2935565-CDS-M-pyrifera_M_contig109792:197..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109792 198..602 +
1692277485.395344-CDS-M-pyrifera_M_contig109792:197..6021692277485.395344-CDS-M-pyrifera_M_contig109792:197..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109792 198..602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109792.2043.1prot_M-pyrifera_M_contig109792.2043.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109792 198..602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109792.2043.1

>prot_M-pyrifera_M_contig109792.2043.1 ID=prot_M-pyrifera_M_contig109792.2043.1|Name=mRNA_M-pyrifera_M_contig109792.2043.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
ALACPQYASNACCNENQNADLVNNFILIDAVFGGECEACAQNLKRFWCSF
VCSPQQADHMRFLRYANHTGLYGDKKLCMEVTLDIDPEYMCGVYASCNGV
SFVAETAIMSTALGFFQYQGQQGAAEHGEWIEFNI
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mRNA from alignment at M-pyrifera_M_contig109792:198..602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109792.2043.1 ID=mRNA_M-pyrifera_M_contig109792.2043.1|Name=mRNA_M-pyrifera_M_contig109792.2043.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig109792:198..602+ (Macrocystis pyrifera P11B4 male)
GCGCTGGCGTGCCCGCAGTACGCTTCGAACGCGTGCTGCAACGAGAACCA
GAACGCGGACTTGGTGAACAACTTCATTCTGATCGACGCGGTGTTTGGCG
GCGAGTGTGAGGCGTGCGCGCAGAACTTGAAGCGCTTCTGGTGCTCTTTC
GTGTGCTCTCCGCAGCAGGCCGACCACATGCGCTTCCTTCGCTACGCCAA
CCACACGGGGTTGTACGGCGACAAGAAGCTGTGCATGGAGGTGACGCTGG
ACATCGATCCGGAGTACATGTGCGGAGTGTACGCTTCGTGCAACGGCGTG
TCGTTCGTGGCGGAGACTGCGATCATGTCGACAGCGCTGGGCTTCTTCCA
GTACCAGGGCCAGCAAGGTGCAGCAGAGCACGGCGAGTGGATCGAGTTCA
ACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109792:198..602+

>mRNA_M-pyrifera_M_contig109792.2043.1 ID=mRNA_M-pyrifera_M_contig109792.2043.1|Name=mRNA_M-pyrifera_M_contig109792.2043.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig109792:198..602+ (Macrocystis pyrifera P11B4 male)
GCGCTGGCGTGCCCGCAGTACGCTTCGAACGCGTGCTGCAACGAGAACCA
GAACGCGGACTTGGTGAACAACTTCATTCTGATCGACGCGGTGTTTGGCG
GCGAGTGTGAGGCGTGCGCGCAGAACTTGAAGCGCTTCTGGTGCTCTTTC
GTGTGCTCTCCGCAGCAGGCCGACCACATGCGCTTCCTTCGCTACGCCAA
CCACACGGGGTTGTACGGCGACAAGAAGCTGTGCATGGAGGTGACGCTGG
ACATCGATCCGGAGTACATGTGCGGAGTGTACGCTTCGTGCAACGGCGTG
TCGTTCGTGGCGGAGACTGCGATCATGTCGACAGCGCTGGGCTTCTTCCA
GTACCAGGGCCAGCAAGGTGCAGCAGAGCACGGCGAGTGGATCGAGTTCA
ACATCGCGCTGGCGTGCCCGCAGTACGCTTCGAACGCGTGCTGCAACGAG
AACCAGAACGCGGACTTGGTGAACAACTTCATTCTGATCGACGCGGTGTT
TGGCGGCGAGTGTGAGGCGTGCGCGCAGAACTTGAAGCGCTTCTGGTGCT
CTTTCGTGTGCTCTCCGCAGCAGGCCGACCACATGCGCTTCCTTCGCTAC
GCCAACCACACGGGGTTGTACGGCGACAAGAAGCTGTGCATGGAGGTGAC
GCTGGACATCGATCCGGAGTACATGTGCGGAGTGTACGCTTCGTGCAACG
GCGTGTCGTTCGTGGCGGAGACTGCGATCATGTCGACAGCGCTGGGCTTC
TTCCAGTACCAGGGCCAGCAAGGTGCAGCAGAGCACGGCGAGTGGATCGA
GTTCAACATC
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