mRNA_M-pyrifera_M_contig109789.2042.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109789.2042.1
Unique NamemRNA_M-pyrifera_M_contig109789.2042.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: A0A812ZWQ1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZWQ1_9DINO)

HSP 1 Score: 65.1 bits (157), Expect = 3.830e-11
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   16 VDYRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDIDRTFTYV 201
            VDY+ VF + ++PMAVA++DG FLD N  FC +TG     +  RS FN T P ++  TF+ V
Sbjct:   94 VDYKGVFQYSAMPMAVASMDGSFLDCNLAFCDITGYSRAEVLQRSFFNFTPPQELQMTFSIV 155          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: UPI00199740FF (PAS domain S-box protein n=1 Tax=Steroidobacteraceae bacterium TaxID=2689616 RepID=UPI00199740FF)

HSP 1 Score: 60.8 bits (146), Expect = 3.470e-9
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   25 RLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDIDRTFTYV 201
            R VFS  +V +A+A L+G FL+AN+ FCS+ G P   LR R+  +LTHP D+++T  +V
Sbjct:  135 RAVFSQAAVGIAIADLNGVFLEANEKFCSILGYPLVELRDRTFLDLTHPEDMEQTRAHV 193          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 7.880e-8
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   22 YRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDIDRTFTYV 201
            YRL F  G +PMA+A +DG F+D NK F  +T      L   ++FNLT P D+  TF+ V
Sbjct:  581 YRLAFFDGCIPMAIATMDGCFVDGNKRFVEVTSYSKAELLKLTIFNLTAPHDLQDTFSRV 640          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: A0A7W1KBL2_9ACTN (PAS domain S-box protein (Fragment) n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7W1KBL2_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1
Query:   22 YRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDIDRTF 192
            +R  F    + MAVAALDG+FL+ N+  C++TG     L   +   +THP D+D  +
Sbjct:  497 FRRAFEDAPIGMAVAALDGRFLEVNQALCTITGYTAEELTETTFSTITHPDDLDADY 553          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: W7TXM2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXM2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.780e-6
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 PTSFDVDYRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGD 177
            P     DY L+F + S+ MAVA+LDGKF+D N  F  ++G     +  RS+F+LT   D
Sbjct:  298 PNKKSADYALMFQNASIAMAVASLDGKFVDCNSAFSIISGYSNGEVLQRSVFDLTPAED 356          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: UPI001E4488B2 (PAS domain S-box protein n=1 Tax=Methanocella sp. CWC-04 TaxID=2052831 RepID=UPI001E4488B2)

HSP 1 Score: 52.8 bits (125), Expect = 2.450e-6
Identity = 21/60 (35.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   22 YRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDIDRTFTYV 201
            +R  F++ ++  A+AA DG+F+DAN  +C +TG     LR++ + NL HP D++     +
Sbjct:  271 FRSAFANAAIGFAMAAPDGRFVDANPAYCMITGYSIEELRTQMIRNLIHPDDLEENMRLI 330          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: A0A366ZHH5_9ACTN (GGDEF domain-containing protein n=1 Tax=Blastococcus sp. TF02-9 TaxID=2250576 RepID=A0A366ZHH5_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 3.080e-6
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1
Query:   19 DYRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDI 180
            D   VF+H    +A+   DG  +D N +   L G+P   LR RS+F+LTHPGD+
Sbjct:   12 DRASVFAHAPTGVALTTPDGVLIDVNGVLAELLGVPEDELRGRSLFDLTHPGDL 65          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: A0A7S3VFC8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VFC8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.280e-6
Identity = 23/59 (38.98%), Postives = 34/59 (57.63%), Query Frame = 1
Query:   16 VDYRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDIDRTF 192
            +DY+ ++   S+P+ VAALDG+F+  N  F   TG   H L SR++F L     +D  F
Sbjct:  481 LDYKAIYDQCSIPLGVAALDGRFIMCNSKFEEWTGYSMHDLDSRTLFGLLPSTGVDEVF 539          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: A0A535PFC5_9CHLR (PAS domain S-box protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535PFC5_9CHLR)

HSP 1 Score: 51.6 bits (122), Expect = 6.360e-6
Identity = 21/59 (35.59%), Postives = 33/59 (55.93%), Query Frame = 1
Query:   13 DVDYRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDIDRT 189
            ++ +R +F      M  A LDGK +  N  +C L G     L+S S+F++THP D++ T
Sbjct:  333 EMRFRTLFEQAQAGMTFAGLDGKIMSVNPAYCELLGYTPDELKSMSIFDVTHPDDVEAT 391          
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Match: A0A1G7QN05_9ACTN (PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Blastococcus sp. DSM 44268 TaxID=1550231 RepID=A0A1G7QN05_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 1.090e-5
Identity = 24/54 (44.44%), Postives = 29/54 (53.70%), Query Frame = 1
Query:   19 DYRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRSMFNLTHPGDI 180
            D   VF H    +A+   DG  LD N     L G P   LR RS+F+LTHPGD+
Sbjct:   12 DRASVFLHAPTGVALTTTDGVLLDVNAALSELLGAPEADLRGRSLFDLTHPGDL 65          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109789.2042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A812ZWQ1_9DINO3.830e-1146.77Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
UPI00199740FF3.470e-947.46PAS domain S-box protein n=1 Tax=Steroidobacterace... [more]
A0A7S2CTA7_9STRA7.880e-845.00Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7W1KBL2_9ACTN1.310e-638.60PAS domain S-box protein (Fragment) n=1 Tax=Soliru... [more]
W7TXM2_9STRA1.780e-642.37Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
UPI001E4488B22.450e-635.00PAS domain S-box protein n=1 Tax=Methanocella sp. ... [more]
A0A366ZHH5_9ACTN3.080e-642.59GGDEF domain-containing protein n=1 Tax=Blastococc... [more]
A0A7S3VFC8_9STRA6.280e-638.98Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A535PFC5_9CHLR6.360e-635.59PAS domain S-box protein n=1 Tax=Chloroflexi bacte... [more]
A0A1G7QN05_9ACTN1.090e-544.44PAS domain S-box-containing protein/diguanylate cy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109789contigM-pyrifera_M_contig109789:85..288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.253786-CDS-M-pyrifera_M_contig109789:84..2881622815608.253786-CDS-M-pyrifera_M_contig109789:84..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109789 85..288 -
1692277485.3851147-CDS-M-pyrifera_M_contig109789:84..2881692277485.3851147-CDS-M-pyrifera_M_contig109789:84..288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109789 85..288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109789.2042.1prot_M-pyrifera_M_contig109789.2042.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109789 85..288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109789.2042.1

>prot_M-pyrifera_M_contig109789.2042.1 ID=prot_M-pyrifera_M_contig109789.2042.1|Name=mRNA_M-pyrifera_M_contig109789.2042.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
PTSFDVDYRLVFSHGSVPMAVAALDGKFLDANKLFCSLTGLPTHSLRSRS
MFNLTHPGDIDRTFTYVV
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mRNA from alignment at M-pyrifera_M_contig109789:85..288-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109789.2042.1 ID=mRNA_M-pyrifera_M_contig109789.2042.1|Name=mRNA_M-pyrifera_M_contig109789.2042.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig109789:85..288- (Macrocystis pyrifera P11B4 male)
CCCACCTCCTTCGATGTGGACTATCGCCTCGTGTTCTCACATGGCTCCGT GCCCATGGCTGTTGCTGCGCTGGACGGGAAGTTCTTGGACGCCAACAAGC TCTTCTGCTCCCTCACCGGCTTGCCCACCCACTCGTTGCGGTCGCGCTCC ATGTTCAACCTGACGCACCCTGGCGACATTGATCGGACGTTCACGTACGT AGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109789:85..288-

>mRNA_M-pyrifera_M_contig109789.2042.1 ID=mRNA_M-pyrifera_M_contig109789.2042.1|Name=mRNA_M-pyrifera_M_contig109789.2042.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig109789:85..288- (Macrocystis pyrifera P11B4 male)
CCCACCTCCTTCGATGTGGACTATCGCCTCGTGTTCTCACATGGCTCCGT
GCCCATGGCTGTTGCTGCGCTGGACGGGAAGTTCTTGGACGCCAACAAGC
TCTTCTGCTCCCTCACCGGCTTGCCCACCCACTCGTTGCGGTCGCGCTCC
ATGTTCAACCTGACGCACCCTGGCGACATTGATCGGACGTTCACGTACGT
AGTGCCCACCTCCTTCGATGTGGACTATCGCCTCGTGTTCTCACATGGCT
CCGTGCCCATGGCTGTTGCTGCGCTGGACGGGAAGTTCTTGGACGCCAAC
AAGCTCTTCTGCTCCCTCACCGGCTTGCCCACCCACTCGTTGCGGTCGCG
CTCCATGTTCAACCTGACGCACCCTGGCGACATTGATCGGACGTTCACGT
ACGTAGTG
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