mRNA_M-pyrifera_M_contig109691.2025.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109691.2025.1
Unique NamemRNA_M-pyrifera_M_contig109691.2025.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109691.2025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109691contigM-pyrifera_M_contig109691:4..555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.3305876-CDS-M-pyrifera_M_contig109691:3..5551622815607.3305876-CDS-M-pyrifera_M_contig109691:3..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109691 4..555 +
1692277484.9806533-CDS-M-pyrifera_M_contig109691:3..5551692277484.9806533-CDS-M-pyrifera_M_contig109691:3..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109691 4..555 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109691.2025.1prot_M-pyrifera_M_contig109691.2025.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109691 4..555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109691.2025.1

>prot_M-pyrifera_M_contig109691.2025.1 ID=prot_M-pyrifera_M_contig109691.2025.1|Name=mRNA_M-pyrifera_M_contig109691.2025.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
NSKHKLVFANILNAMGRCSRSQGDYSSSITYHSRSLAIKEELGDIKGISI
TLNNLGLALESQGDYARAIEYYMRSLVMKEKLGDQQIIAVALNNIGKLHK
KQQNYARAYDYYTRSLAILEKSGNRKRIALSLNNIGNIYRLSGDFAEAIK
YYSRSLAIAEEISEKKTIAITVGNFANVYVDQGD
back to top

mRNA from alignment at M-pyrifera_M_contig109691:4..555+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109691.2025.1 ID=mRNA_M-pyrifera_M_contig109691.2025.1|Name=mRNA_M-pyrifera_M_contig109691.2025.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig109691:4..555+ (Macrocystis pyrifera P11B4 male)
AATTCTAAGCATAAGCTTGTATTTGCCAATATTCTAAATGCTATGGGGAG
GTGTAGCAGATCCCAAGGCGATTATTCAAGCTCAATTACATATCATAGTA
GAAGCTTGGCCATAAAAGAAGAATTAGGGGATATAAAGGGAATCTCTATC
ACTTTAAACAATCTTGGCCTGGCTTTAGAATCGCAAGGCGATTATGCTCG
TGCCATTGAATATTACATGCGCAGTTTAGTCATGAAAGAAAAATTGGGAG
ATCAACAAATTATAGCTGTGGCATTAAACAATATTGGCAAACTACATAAG
AAACAACAAAATTATGCCAGGGCTTATGATTATTATACACGTAGTTTGGC
GATTTTAGAAAAAAGTGGAAATAGAAAACGAATTGCGTTGTCGTTAAACA
ATATTGGGAATATCTACCGATTAAGTGGCGACTTTGCTGAAGCCATCAAA
TATTATAGCCGCAGTTTAGCCATTGCGGAAGAAATTAGTGAAAAAAAGAC
AATTGCTATTACGGTAGGGAATTTTGCTAACGTGTATGTCGATCAAGGAG
AT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109691:4..555+

>mRNA_M-pyrifera_M_contig109691.2025.1 ID=mRNA_M-pyrifera_M_contig109691.2025.1|Name=mRNA_M-pyrifera_M_contig109691.2025.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig109691:4..555+ (Macrocystis pyrifera P11B4 male)
AATTCTAAGCATAAGCTTGTATTTGCCAATATTCTAAATGCTATGGGGAG
GTGTAGCAGATCCCAAGGCGATTATTCAAGCTCAATTACATATCATAGTA
GAAGCTTGGCCATAAAAGAAGAATTAGGGGATATAAAGGGAATCTCTATC
ACTTTAAACAATCTTGGCCTGGCTTTAGAATCGCAAGGCGATTATGCTCG
TGCCATTGAATATTACATGCGCAGTTTAGTCATGAAAGAAAAATTGGGAG
ATCAACAAATTATAGCTGTGGCATTAAACAATATTGGCAAACTACATAAG
AAACAACAAAATTATGCCAGGGCTTATGATTATTATACACGTAGTTTGGC
GATTTTAGAAAAAAGTGGAAATAGAAAACGAATTGCGTTGTCGTTAAACA
ATATTGGGAATATCTACCGATTAAGTGGCGACTTTGCTGAAGCCATCAAA
TATTATAGCCGCAGTTTAGCCATTGCGGAAGAAATTAGTGAAAAAAAGAC
AATTGCTATTACGGTAGGGAATTTTGCTAACGTGTATGTCGATCAAGGAG
ATAATTCTAAGCATAAGCTTGTATTTGCCAATATTCTAAATGCTATGGGG
AGGTGTAGCAGATCCCAAGGCGATTATTCAAGCTCAATTACATATCATAG
TAGAAGCTTGGCCATAAAAGAAGAATTAGGGGATATAAAGGGAATCTCTA
TCACTTTAAACAATCTTGGCCTGGCTTTAGAATCGCAAGGCGATTATGCT
CGTGCCATTGAATATTACATGCGCAGTTTAGTCATGAAAGAAAAATTGGG
AGATCAACAAATTATAGCTGTGGCATTAAACAATATTGGCAAACTACATA
AGAAACAACAAAATTATGCCAGGGCTTATGATTATTATACACGTAGTTTG
GCGATTTTAGAAAAAAGTGGAAATAGAAAACGAATTGCGTTGTCGTTAAA
CAATATTGGGAATATCTACCGATTAAGTGGCGACTTTGCTGAAGCCATCA
AATATTATAGCCGCAGTTTAGCCATTGCGGAAGAAATTAGTGAAAAAAAG
ACAATTGCTATTACGGTAGGGAATTTTGCTAACGTGTATGTCGATCAAGG
AGAT
back to top