mRNA_M-pyrifera_M_contig109664.2019.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109664.2019.1
Unique NamemRNA_M-pyrifera_M_contig109664.2019.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109664.2019.1 vs. uniprot
Match: A0A7S0PGC2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PGC2_CAFRO)

HSP 1 Score: 133 bits (335), Expect = 9.350e-36
Identity = 84/183 (45.90%), Postives = 110/183 (60.11%), Query Frame = 1 
Query:   13 RLAEMEEQTEVLRRKLRAWAAEAEALAHAGAGEVDSDKITGTTQRYEARWLRARLEEAVEEFRIQLEAIQREREDVEPSLREAQRRSRALRRELGPRMEAATQRVIAGRRSKHEKRRRMRQEAARVVQAAWRGTQVRRAIRRGANPWIPVLPRHADERPYFYNPVTQVSRWTMPVDFEVWGAS 561
            R A+  E+   +R ++R+WA EAE L H G  EVDS+K+TGT QRY A WLR RL EA++  + +L  +++E ED + +L   QRR RA  R +GP  E A + V+  RR+  +  R  R+  A  VQA WRG  VR A+RRG N W  V    A    YF N VTQ SR T P DF+VWG +
Sbjct:   23 RRADAAEEAANVRAQMRSWAREAEELRHQGTAEVDSEKLTGTKQRYRADWLRTRLVEAMDGLQRELRRLEQEDEDAQAALTAVQRRVRACERVVGPTQEEAVRTVLMARRAAAKADRERRRAGASRVQALWRGHCVRAAVRRGGNTWAAVWDAAASRVVYF-NVVTQRSRLTRPADFDVWGGA 204
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BLAST of mRNA_M-pyrifera_M_contig109664.2019.1 vs. uniprot
Match: A0A5A8BZX5_CAFRO (WW domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8BZX5_CAFRO)

HSP 1 Score: 132 bits (332), Expect = 2.650e-32
Identity = 81/171 (47.37%), Postives = 104/171 (60.82%), Query Frame = 1 
Query:   49 RRKLRAWAAEAEALAHAGAGEVDSDKITGTTQRYEARWLRARLEEAVEEFRIQLEAIQREREDVEPSLREAQRRSRALRRELGPRMEAATQRVIAGRRSKHEKRRRMRQEAARVVQAAWRGTQVRRAIRRGANPWIPVLPRHADERPYFYNPVTQVSRWTMPVDFEVWGAS 561
            R ++R+WA EAE L H G  EVDS+K+TGT QRY A WLR RL EA++  + +L  +++E ED + +L   QRR RA  R +GP  E A + V+  RR+  +  R  R+  A  VQA WRG  VR A+RRG N W  V    A    YF N VTQ SR T P DF+VWG +
Sbjct:  450 RERMRSWAREAEELRHQGTAEVDSEKLTGTKQRYRADWLRTRLVEAMDGLQRELRRLEQEDEDAQAALTAVQRRVRACERVVGPTQEEAVRTVLLARRAAAKADRERRRAGASRVQALWRGHCVRAAVRRGGNTWAAVWDAAASRVVYF-NVVTQRSRLTRPADFDVWGGA 619
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BLAST of mRNA_M-pyrifera_M_contig109664.2019.1 vs. uniprot
Match: A0A5A8E873_CAFRO (WW domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E873_CAFRO)

HSP 1 Score: 132 bits (332), Expect = 2.730e-32
Identity = 81/171 (47.37%), Postives = 104/171 (60.82%), Query Frame = 1 
Query:   49 RRKLRAWAAEAEALAHAGAGEVDSDKITGTTQRYEARWLRARLEEAVEEFRIQLEAIQREREDVEPSLREAQRRSRALRRELGPRMEAATQRVIAGRRSKHEKRRRMRQEAARVVQAAWRGTQVRRAIRRGANPWIPVLPRHADERPYFYNPVTQVSRWTMPVDFEVWGAS 561
            R ++R+WA EAE L H G  EVDS+K+TGT QRY A WLR RL EA++  + +L  +++E ED + +L   QRR RA  R +GP  E A + V+  RR+  +  R  R+  A  VQA WRG  VR A+RRG N W  V    A    YF N VTQ SR T P DF+VWG +
Sbjct:  755 RERMRSWAREAEELRHQGTAEVDSEKLTGTKQRYRADWLRTRLVEAMDGLQRELRRLEQEDEDAQAALTAVQRRVRACERVVGPTQEEAVRTVLMARRAAAKADRERRRAGASRVQALWRGHCVRAAVRRGGNTWAAVWDAAASRVVYF-NVVTQRSRLTRPADFDVWGGA 924
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BLAST of mRNA_M-pyrifera_M_contig109664.2019.1 vs. uniprot
Match: A0A5A8CFH5_CAFRO (WW domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CFH5_CAFRO)

HSP 1 Score: 130 bits (327), Expect = 1.240e-31
Identity = 80/168 (47.62%), Postives = 102/168 (60.71%), Query Frame = 1 
Query:   58 LRAWAAEAEALAHAGAGEVDSDKITGTTQRYEARWLRARLEEAVEEFRIQLEAIQREREDVEPSLREAQRRSRALRRELGPRMEAATQRVIAGRRSKHEKRRRMRQEAARVVQAAWRGTQVRRAIRRGANPWIPVLPRHADERPYFYNPVTQVSRWTMPVDFEVWGAS 561
            +R+WA EAE L H G  EVDS+K+TGT QRY A WLR RL EA++  + +L  +++E ED + +L   QRR RA  R +GP  E A + V+  RR+  +  R  R+  A  VQA WRG  VR A+RRG N W  V    A    YF N VTQ SR T P DF+VWG +
Sbjct:  534 MRSWAREAEELRHQGTAEVDSEKLTGTKQRYRADWLRTRLVEAMDGLQRELRRLEQEDEDAQAALTAVQRRVRACERVVGPTQEEAVRTVLLARRAAAKADRERRRAGASRVQALWRGHCVRAAVRRGGNTWAAVWDAAASRVVYF-NVVTQRSRLTRPADFDVWGGA 700
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BLAST of mRNA_M-pyrifera_M_contig109664.2019.1 vs. uniprot
Match: A0A225WN89_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WN89_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.110e-11
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:  115 DSDKITGTTQRYEARWLRARLEEAVEEFRIQLEAIQREREDVEPSLREAQRRSRALRRELGPRMEAATQRVIAGRRSKHEKRRRMRQEAARVVQAAWRGTQVRRAIRRGANPWIPVL-PRHADERPYFYNPVTQVSRWTMPVDFEVWGASPAT 570
            DS +ITGT QRY   +L+  L + +   R ++    R  E++  SL +AQR+ R +RREL P  +   ++    R  + + + R  + AA  +Q  +RG +VR A+R G N WI ++ P +A  RPYFYN +T  +RW  P    V+   P T
Sbjct:  794 DSSRITGTPQRYLTEYLQ--LADQLRAKRTEVALDGRALENLTTSLNDAQRQLRGVRRELEPLTDGVIKKTRENRVKRLQDKVRHERHAAISIQKIFRGFRVRSAVREGGNCWIQLVSPDNA--RPYFYNVLTNATRWHRPFTEYVFFYHPPT 942
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109664.2019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S0PGC2_CAFRO9.350e-3645.90Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8BZX5_CAFRO2.650e-3247.37WW domain-containing protein n=2 Tax=Cafeteria roe... [more]
A0A5A8E873_CAFRO2.730e-3247.37WW domain-containing protein n=2 Tax=Cafeteria roe... [more]
A0A5A8CFH5_CAFRO1.240e-3147.62WW domain-containing protein n=1 Tax=Cafeteria roe... [more]
A0A225WN89_9STRA9.110e-1135.95Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109664contigM-pyrifera_M_contig109664:9..578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue6.2e-14
Seed eggNOG ortholog4792.ETI56676
KEGG koko:K10268,ko:K10280
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs3QC6Y@4776,KOG4341@1,KOG4341@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size570
Cds size546
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.081989-UTR-M-pyrifera_M_contig109664:8..321622815607.081989-UTR-M-pyrifera_M_contig109664:8..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109664 9..32 +
1692277484.8721933-UTR-M-pyrifera_M_contig109664:8..321692277484.8721933-UTR-M-pyrifera_M_contig109664:8..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109664 9..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.0929506-CDS-M-pyrifera_M_contig109664:32..5781622815607.0929506-CDS-M-pyrifera_M_contig109664:32..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109664 33..578 +
1692277484.8922389-CDS-M-pyrifera_M_contig109664:32..5781692277484.8922389-CDS-M-pyrifera_M_contig109664:32..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109664 33..578 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109664.2019.1prot_M-pyrifera_M_contig109664.2019.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109664 33..578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109664.2019.1

>prot_M-pyrifera_M_contig109664.2019.1 ID=prot_M-pyrifera_M_contig109664.2019.1|Name=mRNA_M-pyrifera_M_contig109664.2019.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
MEEQTEVLRRKLRAWAAEAEALAHAGAGEVDSDKITGTTQRYEARWLRAR
LEEAVEEFRIQLEAIQREREDVEPSLREAQRRSRALRRELGPRMEAATQR
VIAGRRSKHEKRRRMRQEAARVVQAAWRGTQVRRAIRRGANPWIPVLPRH
ADERPYFYNPVTQVSRWTMPVDFEVWGASPAT
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mRNA from alignment at M-pyrifera_M_contig109664:9..578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109664.2019.1 ID=mRNA_M-pyrifera_M_contig109664.2019.1|Name=mRNA_M-pyrifera_M_contig109664.2019.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig109664:9..578+ (Macrocystis pyrifera P11B4 male)
CGACTGGAACATCGATTGGCGGAAATGGAGGAGCAAACAGAAGTGTTGCG
ACGAAAGCTTCGTGCATGGGCAGCAGAGGCGGAAGCTCTAGCTCATGCAG
GTGCTGGAGAAGTTGATTCTGACAAAATTACTGGTACGACGCAACGATAT
GAAGCTCGGTGGCTGCGTGCCCGCTTGGAAGAAGCTGTGGAAGAGTTTAG
AATTCAACTGGAGGCAATCCAAAGAGAAAGAGAAGATGTGGAGCCATCTC
TTCGTGAAGCACAGAGAAGAAGTAGGGCGTTACGTCGTGAACTTGGTCCA
AGAATGGAAGCTGCCACACAACGTGTCATTGCTGGTAGGCGGTCAAAGCA
TGAAAAACGTCGACGAATGCGGCAAGAGGCTGCGCGTGTGGTACAAGCTG
CATGGCGAGGCACGCAAGTACGAAGAGCTATTCGAAGAGGTGCCAATCCA
TGGATTCCAGTGCTACCACGGCATGCAGACGAACGTCCATATTTCTACAA
CCCAGTGACACAAGTCTCTCGCTGGACAATGCCTGTTGACTTTGAAGTCT
GGGGAGCTTCACCTGCGACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109664:9..578+

>mRNA_M-pyrifera_M_contig109664.2019.1 ID=mRNA_M-pyrifera_M_contig109664.2019.1|Name=mRNA_M-pyrifera_M_contig109664.2019.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig109664:9..578+ (Macrocystis pyrifera P11B4 male)
ATGGAGGAGCAAACAGAAGTGTTGCGACGAAAGCTTCGTGCATGGGCAGC
AGAGGCGGAAGCTCTAGCTCATGCAGGTGCTGGAGAAGTTGATTCTGACA
AAATTACTGGTACGACGCAACGATATGAAGCTCGGTGGCTGCGTGCCCGC
TTGGAAGAAGCTGTGGAAGAGTTTAGAATTCAACTGGAGGCAATCCAAAG
AGAAAGAGAAGATGTGGAGCCATCTCTTCGTGAAGCACAGAGAAGAAGTA
GGGCGTTACGTCGTGAACTTGGTCCAAGAATGGAAGCTGCCACACAACGT
GTCATTGCTGGTAGGCGGTCAAAGCATGAAAAACGTCGACGAATGCGGCA
AGAGGCTGCGCGTGTGGTACAAGCTGCATGGCGAGGCACGCAAGTACGAA
GAGCTATTCGAAGAGGTGCCAATCCATGGATTCCAGTGCTACCACGGCAT
GCAGACGAACGTCCATATTTCTACAACCCAGTGACACAAGTCTCTCGCTG
GACAATGCCTGTTGACTTTGAAGTCTGGGGAGCTTCACCTGCGACAATGG
AGGAGCAAACAGAAGTGTTGCGACGAAAGCTTCGTGCATGGGCAGCAGAG
GCGGAAGCTCTAGCTCATGCAGGTGCTGGAGAAGTTGATTCTGACAAAAT
TACTGGTACGACGCAACGATATGAAGCTCGGTGGCTGCGTGCCCGCTTGG
AAGAAGCTGTGGAAGAGTTTAGAATTCAACTGGAGGCAATCCAAAGAGAA
AGAGAAGATGTGGAGCCATCTCTTCGTGAAGCACAGAGAAGAAGTAGGGC
GTTACGTCGTGAACTTGGTCCAAGAATGGAAGCTGCCACACAACGTGTCA
TTGCTGGTAGGCGGTCAAAGCATGAAAAACGTCGACGAATGCGGCAAGAG
GCTGCGCGTGTGGTACAAGCTGCATGGCGAGGCACGCAAGTACGAAGAGC
TATTCGAAGAGGTGCCAATCCATGGATTCCAGTGCTACCACGGCATGCAG
ACGAACGTCCATATTTCTACAACCCAGTGACACAAGTCTCTCGCTGGACA
ATGCCTGTTGACTTTGAAGTCTGGGGAGCTTCACCTGCGACA
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