mRNA_M-pyrifera_M_contig109632.2018.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109632.2018.1
Unique NamemRNA_M-pyrifera_M_contig109632.2018.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig109632.2018.1 vs. uniprot
Match: A0A7S4HH53_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HH53_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.010e-11
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 ELLDYIHFAAQNGDSTSQGDLGRVYLFGLYHEEKDYELARYYLGLAHEQEDAKATAFLGKLYEFGYGVDIDIERAADLYREASD 252
            E+L+Y+ F A   ++ S  ++G +YLFG Y +E DY +A+ Y     E  + +A A LG+LYEFG GVD D ++A + Y  A++
Sbjct:  274 EILEYVKFNANPDNAKSLVEIGILYLFGYYGQEVDYAVAKDYFEQV-EDVEPRAQAMLGRLYEFGLGVDADAQKAEEYYSRAAE 356
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109632.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4HH53_9EUKA1.010e-1140.48Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109632contigM-pyrifera_M_contig109632:70..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.0506263-CDS-M-pyrifera_M_contig109632:69..3271622815607.0506263-CDS-M-pyrifera_M_contig109632:69..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109632 70..327 +
1692277484.8598766-CDS-M-pyrifera_M_contig109632:69..3271692277484.8598766-CDS-M-pyrifera_M_contig109632:69..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109632 70..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109632.2018.1prot_M-pyrifera_M_contig109632.2018.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109632 70..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109632.2018.1

>prot_M-pyrifera_M_contig109632.2018.1 ID=prot_M-pyrifera_M_contig109632.2018.1|Name=mRNA_M-pyrifera_M_contig109632.2018.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
ELLDYIHFAAQNGDSTSQGDLGRVYLFGLYHEEKDYELARYYLGLAHEQE
DAKATAFLGKLYEFGYGVDIDIERAADLYREASDGV
back to top

mRNA from alignment at M-pyrifera_M_contig109632:70..327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109632.2018.1 ID=mRNA_M-pyrifera_M_contig109632.2018.1|Name=mRNA_M-pyrifera_M_contig109632.2018.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig109632:70..327+ (Macrocystis pyrifera P11B4 male)
GAGTTGCTGGACTACATCCACTTTGCAGCCCAGAATGGCGATTCTACGTC
ACAAGGAGACTTGGGACGGGTGTATTTGTTTGGTCTCTATCATGAGGAAA
AGGACTACGAGCTCGCAAGATATTACTTGGGCCTTGCCCACGAGCAGGAG
GACGCGAAGGCGACTGCATTCCTTGGAAAGCTTTATGAGTTTGGCTACGG
CGTGGATATCGACATCGAGCGAGCTGCCGACCTTTACAGAGAAGCCAGTG
ACGGTGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109632:70..327+

>mRNA_M-pyrifera_M_contig109632.2018.1 ID=mRNA_M-pyrifera_M_contig109632.2018.1|Name=mRNA_M-pyrifera_M_contig109632.2018.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig109632:70..327+ (Macrocystis pyrifera P11B4 male)
GAGTTGCTGGACTACATCCACTTTGCAGCCCAGAATGGCGATTCTACGTC
ACAAGGAGACTTGGGACGGGTGTATTTGTTTGGTCTCTATCATGAGGAAA
AGGACTACGAGCTCGCAAGATATTACTTGGGCCTTGCCCACGAGCAGGAG
GACGCGAAGGCGACTGCATTCCTTGGAAAGCTTTATGAGTTTGGCTACGG
CGTGGATATCGACATCGAGCGAGCTGCCGACCTTTACAGAGAAGCCAGTG
ACGGTGTAGAGTTGCTGGACTACATCCACTTTGCAGCCCAGAATGGCGAT
TCTACGTCACAAGGAGACTTGGGACGGGTGTATTTGTTTGGTCTCTATCA
TGAGGAAAAGGACTACGAGCTCGCAAGATATTACTTGGGCCTTGCCCACG
AGCAGGAGGACGCGAAGGCGACTGCATTCCTTGGAAAGCTTTATGAGTTT
GGCTACGGCGTGGATATCGACATCGAGCGAGCTGCCGACCTTTACAGAGA
AGCCAGTGACGGTGTA
back to top