mRNA_M-pyrifera_M_contig109631.2017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109631.2017.1
Unique NamemRNA_M-pyrifera_M_contig109631.2017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: A0A1Y2AKL7_9FUNG (DUF229-domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2AKL7_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 2.290e-15
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = 1
Query:   13 KSCAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRN-SFARSPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALR 444
            + C   +Y+H   ++YT  F   Y           P F   + +EAHE +   ++ +D  L   ++ L  +G L+ TA+++ SD G +    F  +  G  E + PF+  ++PERFLK YPE R  L  N  ++ +AYD+YA  +
Sbjct:   79 RRCLTGRYVHNYAVDYTKDFIKTYDGTN-------PWFFRASFIEAHESTASVLKLIDDDLVDLIETLGDEG-LDRTAIIMMSDHGLHMGLCFLFTEQGFVEHKLPFLATLIPERFLKDYPELRQNLDDNEQKLISAYDIYATFK 215          
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: A0A1Y2D5X9_9FUNG (DUF229-domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2D5X9_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 2.990e-14
Identity = 46/145 (31.72%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   13 KSCAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRN-SFARSPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALR 444
            + C   +Y+H   ++YT  F   Y           P F   + +EAHE +   +  +D  L    + L +D  L+ TA+++ SD G +    F  +  G  E + PF+  ++PERFLK YPE R  L  N  ++ +AYD+YA L+
Sbjct:  418 RRCLTGRYVHKYGIDYTKDFIKTYDGTN-------PWFFRASFIEAHEGTASVLSLMDDDLVDLFESL-SDEALDRTAIIMMSDHGLHMGLCFLFTHQGFVEHKLPFLATLIPERFLKEYPELRKNLDDNEQKLISAYDIYATLK 554          
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: L1JB39_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JB39_GUITC)

HSP 1 Score: 76.6 bits (187), Expect = 1.910e-13
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   19 CAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRNSFAR-SPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALRRI 450
            C G + + ++   Y  +F+++Y         + P    +++M+AHEPSMLR R +D  L   L+ L     L +  VVL  D G +   F   +  G+ E + P ++ +VP+ F        A  +HN  ++ T YDV+A LR I
Sbjct:  371 CFGGQSIFSIFANYVKEFWSSYS--------HVPKMVYLSVMDAHEPSMLRARQIDVELRDLLRSLLRISVLREIFVVLCGDHGVWYGEFYEDTKAGRLESKLPALFLLVPDEFASQNAAMAAYAKHNQPKLTTPYDVHATLRHI 507          
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: A0A7S1NGN5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NGN5_9EUGL)

HSP 1 Score: 67.8 bits (164), Expect = 2.250e-10
Identity = 48/153 (31.37%), Postives = 66/153 (43.14%), Query Frame = 1
Query:   10 GKSCAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLM------EAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRNSFARSPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALRRI 450
            GK C G+K+ HTL LE+      AY       GD P   A  +L        AH         +DR L  FL    A G L  + V+L +D GQ    +A +P G  E   P +  I P    +A+P+  A  + +     T YD+YA  R +
Sbjct:  220 GKHCVGDKFYHTLSLEFMRDVAHAYL------GDSPSPAAPTSLALFGGGETAHTEYGQLAHHMDRDLEAFLGAGEASGLLPQSVVLLWADHGQPFGRYATTPAGWVERLNPVLIIIAPPWLGEAFPDLLAQARQSQTARVTPYDIYATFRHL 366          
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: UPI001C718A5B (uncharacterized protein LOC107451315 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C718A5B)

HSP 1 Score: 67.4 bits (163), Expect = 3.140e-10
Identity = 42/141 (29.79%), Postives = 65/141 (46.10%), Query Frame = 1
Query:   19 CAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRNSFARSPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAAL 441
            C G+   +   L+Y  +F   Y  E  +R    P FA   L E       R+ + D     F K L ADGYL++TA+++ SD G   +S   + +G  E   PF    +P R    +P  +  L+ N  ++ T +D +A L
Sbjct:  326 CYGSFPKYFAQLDYLRRFIVTY--ENAKR----PYFAFSFLAELTHDYTTRIASADIYFERFFKSLKADGYLDNTAMIVMSDHGHRFDSIRTTQVGHTEELLPFFSVYIPHRLSSLHPTAKRGLELNSGRLVTPFDTHATL 460          
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: A0A820GE21_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820GE21_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 1.070e-8
Identity = 38/144 (26.39%), Postives = 65/144 (45.14%), Query Frame = 1
Query:   19 CAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRNSFARSPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALRRI 450
            C G+      + ++    F  Y+ +        P F+ +        S  R+   D  L  FL+M+H +GYL+ T +V+ +D G    S  ++  GK E R PFM   +P +F   YP     L+ N H++ T +D++     +
Sbjct:  102 CFGSITRLRAMFDWIRNLFDMYRHQ--------PKFSYLFHSHYSHDSNNRLPYADNELLAFLQMMHTNGYLDHTMLVIMTDHGARFASLRKTYQGKLEERLPFMSIRMPPKFQAQYPTIMRNLRLNSHRLTTPFDIHETFEHL 237          
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: A0A815NU40_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815NU40_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-8
Identity = 38/144 (26.39%), Postives = 65/144 (45.14%), Query Frame = 1
Query:   19 CAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRNSFARSPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALRRI 450
            C G+      + ++    F  Y+ +        P F+ +        S  R+   D  L  FL+M+H +GYL+ T +V+ +D G    S  ++  GK E R PFM   +P +F   YP     L+ N H++ T +D++     +
Sbjct:  180 CFGSITRLRAMFDWIRNLFDMYRHQ--------PKFSYLFHSHYSHDSNNRLPYADNELLAFLQMMHTNGYLDHTMLVIMTDHGARFASLRKTYQGKLEERLPFMSIRMPPKFQAQYPTIMRNLRLNSHRLTTPFDIHETFEHL 315          
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Match: A0A819GTP4_9BILA (Hypothetical protein n=6 Tax=Adineta steineri TaxID=433720 RepID=A0A819GTP4_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 1.460e-7
Identity = 37/144 (25.69%), Postives = 65/144 (45.14%), Query Frame = 1
Query:   19 CAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEAHEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRNSFARSPLGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALRRI 450
            C G+     ++ ++    F  Y+ +        P F+ +        S  R+   D  L  FL+M+H +GYL+ T +V+ +D G    S  ++  GK E R PFM   +P +F   Y      L+ N H++ T +D++     +
Sbjct:  213 CFGSITRLQVMFDWIRNLFDMYRHQ--------PKFSCLFHSHYSHDSNNRLPYADNELLAFLQMMHTNGYLDHTMLVIMTDHGARFASLRKTYQGKLEERLPFMSIRMPPKFQAQYLTIMRNLRLNSHRLTTPFDIHETFEHL 348          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109631.2017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A1Y2AKL7_9FUNG2.290e-1531.03DUF229-domain-containing protein n=1 Tax=Neocallim... [more]
A0A1Y2D5X9_9FUNG2.990e-1431.72DUF229-domain-containing protein n=1 Tax=Neocallim... [more]
L1JB39_GUITC1.910e-1330.34Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S1NGN5_9EUGL2.250e-1031.37Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI001C718A5B3.140e-1029.79uncharacterized protein LOC107451315 n=1 Tax=Paras... [more]
A0A820GE21_9BILA1.070e-826.39Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A815NU40_9BILA1.510e-826.39Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A819GTP4_9BILA1.460e-725.69Hypothetical protein n=6 Tax=Adineta steineri TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109631contigM-pyrifera_M_contig109631:88..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog55529.EKX45753
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF229)
EggNOG OGs28JJT@1,2QQ0X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size450
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.020097-CDS-M-pyrifera_M_contig109631:87..5371622815607.020097-CDS-M-pyrifera_M_contig109631:87..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109631 88..537 +
1692277484.848451-CDS-M-pyrifera_M_contig109631:87..5371692277484.848451-CDS-M-pyrifera_M_contig109631:87..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109631 88..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109631.2017.1prot_M-pyrifera_M_contig109631.2017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109631 88..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109631.2017.1

>prot_M-pyrifera_M_contig109631.2017.1 ID=prot_M-pyrifera_M_contig109631.2017.1|Name=mRNA_M-pyrifera_M_contig109631.2017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
WQRGKSCAGNKYLHTLVLEYTAQFFAAYKRERGERGDYPPLFATVTLMEA
HEPSMLRVRTLDRSLAHFLKMLHADGYLEDTAVVLASDMGQYRNSFARSP
LGKKEMREPFMYAIVPERFLKAYPETRAALQHNIHQVCTAYDVYAALRRI
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mRNA from alignment at M-pyrifera_M_contig109631:88..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109631.2017.1 ID=mRNA_M-pyrifera_M_contig109631.2017.1|Name=mRNA_M-pyrifera_M_contig109631.2017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig109631:88..537+ (Macrocystis pyrifera P11B4 male)
TGGCAGCGAGGAAAGTCTTGTGCAGGCAACAAGTACTTGCACACTCTTGT GCTGGAGTACACTGCCCAGTTTTTCGCAGCCTACAAGAGAGAGCGAGGGG AGAGGGGAGATTACCCGCCACTCTTTGCTACCGTTACGCTTATGGAGGCG CATGAGCCTTCCATGCTGCGAGTGCGCACCCTCGACAGGTCTCTTGCGCA CTTCTTGAAGATGCTGCATGCGGACGGCTACCTGGAAGACACAGCAGTAG TGTTGGCCAGCGACATGGGGCAGTATCGCAACTCCTTTGCACGGTCTCCC CTCGGCAAGAAGGAAATGAGAGAGCCCTTCATGTACGCCATTGTACCTGA ACGGTTTCTTAAGGCCTACCCCGAGACGAGAGCAGCGCTCCAGCACAACA TCCACCAAGTCTGCACTGCTTACGACGTGTACGCTGCTCTACGGAGGATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109631:88..537+

>mRNA_M-pyrifera_M_contig109631.2017.1 ID=mRNA_M-pyrifera_M_contig109631.2017.1|Name=mRNA_M-pyrifera_M_contig109631.2017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig109631:88..537+ (Macrocystis pyrifera P11B4 male)
TGGCAGCGAGGAAAGTCTTGTGCAGGCAACAAGTACTTGCACACTCTTGT
GCTGGAGTACACTGCCCAGTTTTTCGCAGCCTACAAGAGAGAGCGAGGGG
AGAGGGGAGATTACCCGCCACTCTTTGCTACCGTTACGCTTATGGAGGCG
CATGAGCCTTCCATGCTGCGAGTGCGCACCCTCGACAGGTCTCTTGCGCA
CTTCTTGAAGATGCTGCATGCGGACGGCTACCTGGAAGACACAGCAGTAG
TGTTGGCCAGCGACATGGGGCAGTATCGCAACTCCTTTGCACGGTCTCCC
CTCGGCAAGAAGGAAATGAGAGAGCCCTTCATGTACGCCATTGTACCTGA
ACGGTTTCTTAAGGCCTACCCCGAGACGAGAGCAGCGCTCCAGCACAACA
TCCACCAAGTCTGCACTGCTTACGACGTGTACGCTGCTCTACGGAGGATA
TGGCAGCGAGGAAAGTCTTGTGCAGGCAACAAGTACTTGCACACTCTTGT
GCTGGAGTACACTGCCCAGTTTTTCGCAGCCTACAAGAGAGAGCGAGGGG
AGAGGGGAGATTACCCGCCACTCTTTGCTACCGTTACGCTTATGGAGGCG
CATGAGCCTTCCATGCTGCGAGTGCGCACCCTCGACAGGTCTCTTGCGCA
CTTCTTGAAGATGCTGCATGCGGACGGCTACCTGGAAGACACAGCAGTAG
TGTTGGCCAGCGACATGGGGCAGTATCGCAACTCCTTTGCACGGTCTCCC
CTCGGCAAGAAGGAAATGAGAGAGCCCTTCATGTACGCCATTGTACCTGA
ACGGTTTCTTAAGGCCTACCCCGAGACGAGAGCAGCGCTCCAGCACAACA
TCCACCAAGTCTGCACTGCTTACGACGTGTACGCTGCTCTACGGAGGATA
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