mRNA_M-pyrifera_M_contig109564.2010.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109564.2010.1
Unique NamemRNA_M-pyrifera_M_contig109564.2010.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109564.2010.1 vs. uniprot
Match: A0A7S0PAG6_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PAG6_CAFRO)

HSP 1 Score: 87.0 bits (214), Expect = 6.880e-19
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 WGHTSPLVHACRTGNHEAVHLLLLFGESVNAKSKGGERALHVAAQQGNPKVMEALLGRTPLRP 189
            WG+T+PL  A  TGN  AVHLLLLFG+S NA++K G R L +AA+QGN  V+EALLGR PLRP
Sbjct:  209 WGYTTPLCQAAATGNAAAVHLLLLFGDSPNARTKAGHRPLAIAAEQGNVAVVEALLGRAPLRP 271
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BLAST of mRNA_M-pyrifera_M_contig109564.2010.1 vs. uniprot
Match: A0A5A8C7Z5_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C7Z5_CAFRO)

HSP 1 Score: 87.0 bits (214), Expect = 1.710e-18
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 WGHTSPLVHACRTGNHEAVHLLLLFGESVNAKSKGGERALHVAAQQGNPKVMEALLGRTPLRP 189
            WG+T+PL  A  TGN  AVHLLLLFG+S NA++K G R L +AA+QGN  V+EALLGR PLRP
Sbjct:  144 WGYTTPLCQAAATGNAAAVHLLLLFGDSPNARTKAGHRPLAIAAEQGNVAVVEALLGRAPLRP 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig109564.2010.1 vs. uniprot
Match: A0A812K208_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812K208_9DINO)

HSP 1 Score: 77.0 bits (188), Expect = 5.610e-15
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 WGHTSPLVHACRTGNHEAVHLLLLFGESVNAKSKGGERALHVAAQQGNPKVMEALLGRTPLRP 189
            WGHT+PL  A  TGN +AVHLLLLFGE VN +++  +R L VA QQGN   + A+LGRT L P
Sbjct:  199 WGHTTPLARAAETGNWQAVHLLLLFGEDVNGRTRSKDRPLLVAVQQGNVASVLAMLGRTRLVP 261
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109564.2010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0PAG6_CAFRO6.880e-1965.08Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8C7Z5_CAFRO1.710e-1865.08Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A812K208_9DINO5.610e-1558.73Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109564contigM-pyrifera_M_contig109564:371..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_000150.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.2353551-CDS-M-pyrifera_M_contig109564:370..5591622815606.2353551-CDS-M-pyrifera_M_contig109564:370..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109564 371..559 -
1692277484.3442929-CDS-M-pyrifera_M_contig109564:370..5591692277484.3442929-CDS-M-pyrifera_M_contig109564:370..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109564 371..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109564.2010.1prot_M-pyrifera_M_contig109564.2010.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109564 371..559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109564.2010.1

>prot_M-pyrifera_M_contig109564.2010.1 ID=prot_M-pyrifera_M_contig109564.2010.1|Name=mRNA_M-pyrifera_M_contig109564.2010.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
WGHTSPLVHACRTGNHEAVHLLLLFGESVNAKSKGGERALHVAAQQGNPK
VMEALLGRTPLRP
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mRNA from alignment at M-pyrifera_M_contig109564:371..559-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109564.2010.1 ID=mRNA_M-pyrifera_M_contig109564.2010.1|Name=mRNA_M-pyrifera_M_contig109564.2010.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig109564:371..559- (Macrocystis pyrifera P11B4 male)
TGGGGCCACACTTCTCCCTTGGTGCACGCTTGTCGCACTGGGAATCACGA
GGCGGTGCATTTGCTGCTCTTGTTCGGGGAGAGCGTGAACGCGAAGAGCA
AAGGGGGTGAGCGGGCGCTGCATGTAGCTGCCCAGCAAGGGAACCCCAAA
GTGATGGAGGCCCTGTTGGGTAGAACTCCATTACGACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109564:371..559-

>mRNA_M-pyrifera_M_contig109564.2010.1 ID=mRNA_M-pyrifera_M_contig109564.2010.1|Name=mRNA_M-pyrifera_M_contig109564.2010.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig109564:371..559- (Macrocystis pyrifera P11B4 male)
TGGGGCCACACTTCTCCCTTGGTGCACGCTTGTCGCACTGGGAATCACGA
GGCGGTGCATTTGCTGCTCTTGTTCGGGGAGAGCGTGAACGCGAAGAGCA
AAGGGGGTGAGCGGGCGCTGCATGTAGCTGCCCAGCAAGGGAACCCCAAA
GTGATGGAGGCCCTGTTGGGTAGAACTCCATTACGACCTTGGGGCCACAC
TTCTCCCTTGGTGCACGCTTGTCGCACTGGGAATCACGAGGCGGTGCATT
TGCTGCTCTTGTTCGGGGAGAGCGTGAACGCGAAGAGCAAAGGGGGTGAG
CGGGCGCTGCATGTAGCTGCCCAGCAAGGGAACCCCAAAGTGATGGAGGC
CCTGTTGGGTAGAACTCCATTACGACCT
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