mRNA_M-pyrifera_M_contig109562.2009.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109562.2009.1
Unique NamemRNA_M-pyrifera_M_contig109562.2009.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Match: A0A2E7KLQ8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLQ8_9PLAN)

HSP 1 Score: 366 bits (940), Expect = 8.130e-125
Identity = 180/185 (97.30%), Postives = 183/185 (98.92%), Query Frame = 1
Query:    1 KVERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIERQQSVSAGV 555
            KVERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQ EQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGV+VRNYTNGVRF +DGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIER+QSVSAGV
Sbjct:  224 KVERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQAEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVEVRNYTNGVRFTADGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIEREQSVSAGV 408          
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Match: A0A517WF59_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WF59_9PLAN)

HSP 1 Score: 287 bits (734), Expect = 1.880e-93
Identity = 141/185 (76.22%), Postives = 159/185 (85.95%), Query Frame = 1
Query:    1 KVERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIERQQSVSAGV 555
            + +R + + GI+ VNFDP RQFLPLAYRLE  +++ +GR LRWFEAMRVEQ EQQQGIWFP R +LL+   LPT   G S  E+ V+A+SFGTVTD+DLAFTFPAGVDVRNYTNGVRFI+DGKGGVQGEVEGIPYLNGYYLGS+ GPG+ K LFPCVGISTFLLGWYLVRRQERIERQQSVSAGV
Sbjct:  235 QFKRMKKYPGILTVNFDPERQFLPLAYRLECSEEQEQGRTLRWFEAMRVEQAEQQQGIWFPHRFHLLKCNGLPTGAEGSSVEEVLVKAISFGTVTDRDLAFTFPAGVDVRNYTNGVRFIADGKGGVQGEVEGIPYLNGYYLGSVVGPGIHKILFPCVGISTFLLGWYLVRRQERIERQQSVSAGV 419          
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Match: A0A6I6AMB0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AMB0_9PLAN)

HSP 1 Score: 286 bits (733), Expect = 2.660e-93
Identity = 141/185 (76.22%), Postives = 158/185 (85.41%), Query Frame = 1
Query:    1 KVERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIERQQSVSAGV 555
            + +R + + GI+ VNFDP RQFLPLAYRLE  + + +GR LRWFEAMRVEQ EQQQ IWFP R +LL+   LPT   G S  E+ V+AVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFI+DGKGGVQGEVEGIPYLNGYYLGS+FGPG+ K+LFPCVGISTFLLGWYLVRRQERIER+QSVS GV
Sbjct:  235 QFKRMKKYPGILTVNFDPERQFLPLAYRLECSEGQEQGRTLRWFEAMRVEQAEQQQAIWFPQRFHLLKCNGLPTGAEGSSVEEVLVKAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFIADGKGGVQGEVEGIPYLNGYYLGSVFGPGIHKFLFPCVGISTFLLGWYLVRRQERIERKQSVSTGV 419          
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Match: A0A518FRH4_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FRH4_9PLAN)

HSP 1 Score: 205 bits (521), Expect = 2.210e-61
Identity = 108/182 (59.34%), Postives = 131/182 (71.98%), Query Frame = 1
Query:   10 RRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIERQQSVSAGV 555
            R + + GI+ V+FDPARQFLPLAYRLE   ++ +GR+LRWFEAMRVEQ  Q QGIWFP R +LL+   LPT     S  E++VE+VSFGTVT  DLAFTFPAG++V + T GVR+ +DGKGGVQGEV+GIPYLN  YL     P LL  L P  GI+ FLL  Y+ RR  R ER+Q+ S GV
Sbjct:  240 RMKKYPGILTVHFDPARQFLPLAYRLECSQKQEQGRELRWFEAMRVEQAVQTQGIWFPQRFHLLKCNRLPTGAEAESVDEVRVESVSFGTVTKDDLAFTFPAGIEVEDNTTGVRYTADGKGGVQGEVQGIPYLNERYLRGKILPFLLLILLPGTGIALFLLVRYVDRRFARSEREQTASPGV 421          
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Match: A0A518A8M0_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A8M0_9PLAN)

HSP 1 Score: 204 bits (520), Expect = 2.970e-61
Identity = 107/182 (58.79%), Postives = 130/182 (71.43%), Query Frame = 1
Query:   10 RRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIERQQSVSAGV 555
            R + + GI+ V+FDP RQFLPLAYRLE   ++ +GR+LRWFEAMRVEQ  Q QGIWFP R +LL+   LPT     S  E++VE+VSFGTVT +DLAFTFPAG++V + T GVR+ +DGKGGV GEV+GIPYLN  YL     P LL  L P  GI+ FLL  Y+ RR  RIER+Q  S GV
Sbjct:  238 RMKKYPGILTVHFDPVRQFLPLAYRLECSQKQEQGRELRWFEAMRVEQAAQTQGIWFPQRFHLLKCNRLPTGAEAESVDEVRVESVSFGTVTQEDLAFTFPAGIEVEDNTTGVRYTADGKGGVLGEVQGIPYLNERYLRGKILPFLLLILLPGTGIALFLLVRYVDRRYARIEREQPASPGV 419          
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Match: A0A355GNG0_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GNG0_9PLAN)

HSP 1 Score: 154 bits (389), Expect = 7.880e-42
Identity = 80/180 (44.44%), Postives = 115/180 (63.89%), Query Frame = 1
Query:    4 VERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQERIERQQSV 543
            + R+ +  G + V+FDP RQFLP+AY LER + R    ++RWFEAMR+    QQQG WFP+R   LQ   LPTA    +A +++V++++FG+V+  +LAFTFPAG+DV +   GV F +DG GG QGE++GIPYLN  YL  L      K + P      F +GW + R++   + +Q+V
Sbjct:  237 LPRQVNQRGSLTVHFDPQRQFLPVAYLLERMEYRDGFSRVRWFEAMRLLDAVQQQGHWFPSRFQWLQSGGLPTADGLVAAYDVKVDSIAFGSVSQDELAFTFPAGIDVTDNIRGVSFTADGNGGAQGEIQGIPYLNLTYLRVLLRRYFPKTVIPVTIAGLFFIGWCMRRQRPLTDFEQAV 416          
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Match: A0A517VF40_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VF40_9PLAN)

HSP 1 Score: 136 bits (343), Expect = 4.800e-35
Identity = 71/172 (41.28%), Postives = 104/172 (60.47%), Query Frame = 1
Query:    1 KVERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVEQTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLAFTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLLKYLFPCVGISTFLLGWYLVRRQ 516
            ++ R+    G + V+FDP RQFLP+AYRLER + R    ++RWFEAM +    +QQG WFP+R   LQ   +PT+    +A ++ VE+++F +V+  +LAF FPAG+DV +   GV F +DGKGG QG+++GIPY N  YL         K + P        +GW + R +
Sbjct:  243 ELPRQTGRRGTLTVHFDPQRQFLPVAYRLERTENRAGVFEVRWFEAMLLLDAVKQQGHWFPSRFQWLQSGGVPTSDRLVTAYDVNVESIAFDSVSQDELAFKFPAGIDVTDNIRGVSFTADGKGGAQGDIQGIPYWNLTYLRVCLRRYFPKLVIPVSIAGLLFIGWCMRRHR 414          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109562.2009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E7KLQ8_9PLAN8.130e-12597.30Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517WF59_9PLAN1.880e-9376.22Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A6I6AMB0_9PLAN2.660e-9376.22Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A518FRH4_9PLAN2.210e-6159.34Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518A8M0_9PLAN2.970e-6158.79Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A355GNG0_9PLAN7.880e-4244.44Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517VF40_9PLAN4.800e-3541.28Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109562contigM-pyrifera_M_contig109562:1..558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size558
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.1908498-CDS-M-pyrifera_M_contig109562:0..5581622815606.1908498-CDS-M-pyrifera_M_contig109562:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109562 1..558 +
1692277484.3330626-CDS-M-pyrifera_M_contig109562:0..5581692277484.3330626-CDS-M-pyrifera_M_contig109562:0..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109562 1..558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109562.2009.1prot_M-pyrifera_M_contig109562.2009.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109562 1..558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109562.2009.1

>prot_M-pyrifera_M_contig109562.2009.1 ID=prot_M-pyrifera_M_contig109562.2009.1|Name=mRNA_M-pyrifera_M_contig109562.2009.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
KVERRQSWTGIMCVNFDPARQFLPLAYRLERFDQRVEGRKLRWFEAMRVE
QTEQQQGIWFPARLYLLQGTELPTAKAGGSALEIQVEAVSFGTVTDQDLA
FTFPAGVDVRNYTNGVRFISDGKGGVQGEVEGIPYLNGYYLGSLFGPGLL
KYLFPCVGISTFLLGWYLVRRQERIERQQSVSAGV*
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mRNA from alignment at M-pyrifera_M_contig109562:1..558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109562.2009.1 ID=mRNA_M-pyrifera_M_contig109562.2009.1|Name=mRNA_M-pyrifera_M_contig109562.2009.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig109562:1..558+ (Macrocystis pyrifera P11B4 male)
AAGGTCGAACGTCGGCAGAGTTGGACGGGCATCATGTGCGTGAATTTTGA TCCCGCGCGTCAGTTTCTTCCGCTGGCTTATCGGCTGGAGCGCTTTGATC AACGTGTCGAAGGGCGAAAATTACGCTGGTTTGAGGCCATGCGTGTTGAG CAGACGGAACAGCAGCAGGGGATCTGGTTTCCCGCGCGACTGTATTTACT GCAGGGGACTGAGCTGCCTACAGCCAAAGCCGGTGGATCCGCACTGGAAA TTCAGGTTGAGGCTGTCTCATTCGGGACGGTGACAGACCAGGACCTGGCG TTCACTTTTCCAGCGGGTGTGGATGTGAGGAATTATACTAACGGCGTTCG TTTTATTTCTGACGGGAAAGGGGGCGTACAGGGTGAGGTCGAGGGGATTC CGTACCTGAATGGATACTATCTGGGGAGCCTGTTTGGTCCCGGTCTTCTC AAATATCTGTTTCCCTGTGTGGGGATCTCAACCTTTCTGTTGGGCTGGTA TCTGGTTCGTAGACAGGAACGGATTGAACGGCAGCAGTCTGTGTCAGCGG GCGTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109562:1..558+

>mRNA_M-pyrifera_M_contig109562.2009.1 ID=mRNA_M-pyrifera_M_contig109562.2009.1|Name=mRNA_M-pyrifera_M_contig109562.2009.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig109562:1..558+ (Macrocystis pyrifera P11B4 male)
AAGGTCGAACGTCGGCAGAGTTGGACGGGCATCATGTGCGTGAATTTTGA
TCCCGCGCGTCAGTTTCTTCCGCTGGCTTATCGGCTGGAGCGCTTTGATC
AACGTGTCGAAGGGCGAAAATTACGCTGGTTTGAGGCCATGCGTGTTGAG
CAGACGGAACAGCAGCAGGGGATCTGGTTTCCCGCGCGACTGTATTTACT
GCAGGGGACTGAGCTGCCTACAGCCAAAGCCGGTGGATCCGCACTGGAAA
TTCAGGTTGAGGCTGTCTCATTCGGGACGGTGACAGACCAGGACCTGGCG
TTCACTTTTCCAGCGGGTGTGGATGTGAGGAATTATACTAACGGCGTTCG
TTTTATTTCTGACGGGAAAGGGGGCGTACAGGGTGAGGTCGAGGGGATTC
CGTACCTGAATGGATACTATCTGGGGAGCCTGTTTGGTCCCGGTCTTCTC
AAATATCTGTTTCCCTGTGTGGGGATCTCAACCTTTCTGTTGGGCTGGTA
TCTGGTTCGTAGACAGGAACGGATTGAACGGCAGCAGTCTGTGTCAGCGG
GCGTCTAAAAGGTCGAACGTCGGCAGAGTTGGACGGGCATCATGTGCGTG
AATTTTGATCCCGCGCGTCAGTTTCTTCCGCTGGCTTATCGGCTGGAGCG
CTTTGATCAACGTGTCGAAGGGCGAAAATTACGCTGGTTTGAGGCCATGC
GTGTTGAGCAGACGGAACAGCAGCAGGGGATCTGGTTTCCCGCGCGACTG
TATTTACTGCAGGGGACTGAGCTGCCTACAGCCAAAGCCGGTGGATCCGC
ACTGGAAATTCAGGTTGAGGCTGTCTCATTCGGGACGGTGACAGACCAGG
ACCTGGCGTTCACTTTTCCAGCGGGTGTGGATGTGAGGAATTATACTAAC
GGCGTTCGTTTTATTTCTGACGGGAAAGGGGGCGTACAGGGTGAGGTCGA
GGGGATTCCGTACCTGAATGGATACTATCTGGGGAGCCTGTTTGGTCCCG
GTCTTCTCAAATATCTGTTTCCCTGTGTGGGGATCTCAACCTTTCTGTTG
GGCTGGTATCTGGTTCGTAGACAGGAACGGATTGAACGGCAGCAGTCTGT
GTCAGCGGGCGTCTAA
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