mRNA_M-pyrifera_M_contig10954.2002.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10954.2002.1
Unique NamemRNA_M-pyrifera_M_contig10954.2002.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10954.2002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10954contigM-pyrifera_M_contig10954:1939..2495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.891389-CDS-M-pyrifera_M_contig10954:1938..20421622815605.891389-CDS-M-pyrifera_M_contig10954:1938..2042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10954 1939..2042 -
1692277484.2296994-CDS-M-pyrifera_M_contig10954:1938..20421692277484.2296994-CDS-M-pyrifera_M_contig10954:1938..2042Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10954 1939..2042 -
1622815605.9074259-CDS-M-pyrifera_M_contig10954:2416..24951622815605.9074259-CDS-M-pyrifera_M_contig10954:2416..2495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10954 2417..2495 -
1692277484.240197-CDS-M-pyrifera_M_contig10954:2416..24951692277484.240197-CDS-M-pyrifera_M_contig10954:2416..2495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10954 2417..2495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10954.2002.1prot_M-pyrifera_M_contig10954.2002.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10954 1939..2495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10954.2002.1

>prot_M-pyrifera_M_contig10954.2002.1 ID=prot_M-pyrifera_M_contig10954.2002.1|Name=mRNA_M-pyrifera_M_contig10954.2002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
RRGRGRGRGRGRGRGRGRGKGEGGGAGGGGGVGRGGGGGRRGGDVRREER
EDEEDGEGEKG
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mRNA from alignment at M-pyrifera_M_contig10954:1939..2495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10954.2002.1 ID=mRNA_M-pyrifera_M_contig10954.2002.1|Name=mRNA_M-pyrifera_M_contig10954.2002.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=557bp|location=Sequence derived from alignment at M-pyrifera_M_contig10954:1939..2495- (Macrocystis pyrifera P11B4 male)
AGACGGGGAAGGGGACGGGGGAGAGGGAGAGGGAGAGGGAGAGGCCGAGG
GAGGGGGAAAGGAGAAGGAGGAGGGGCAGGTAGAGGAGCAGGAGGGGGGC
TAGGAGAAGGAGAAGAGGGTCAAGGGGGAGGAGGGGGGGCTATCCCAACG
GCGGTAGAGGCGGAAGCATGGAAGGTAGCGGTGGCGAAGGGAGTAGCATC
CAAGGGTGCTTTAGGCACCGGCAGCTCCTCGGGTAGTGGCGGTGGTTGGG
TCGACCCCACGGCGCTGCTTTCTCGCGGCTTCCTCCCGTCCCCAGCCGCC
GTGCTATTTTTTGGAGGCGGTGTCGCGAAGGGGGAAGCGGGGAGAGCGGT
CGAGGCCGAAAATGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATAATG
GGAAGGCCGAAAGAGCTAGGAATGCTGGAGGGGTTTCCATGGCAATGGAC
GAGGAGGCGGTGGGGGTGTCGGCCGGGGGGGGGGAGGCGGGAGGAGAGGT
GGTGATGTCCGCCGCGAGGAAAGAGAGGATGAGGAAGACGGCGAGGGCGA
GAAGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10954:1939..2495-

>mRNA_M-pyrifera_M_contig10954.2002.1 ID=mRNA_M-pyrifera_M_contig10954.2002.1|Name=mRNA_M-pyrifera_M_contig10954.2002.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig10954:1939..2495- (Macrocystis pyrifera P11B4 male)
AGACGGGGAAGGGGACGGGGGAGAGGGAGAGGGAGAGGGAGAGGCCGAGG
GAGGGGGAAAGGAGAAGGAGGAGGGGCAGAGACGGGGAAGGGGACGGGGG
AGAGGGAGAGGGAGAGGGAGAGGCCGAGGGAGGGGGAAAGGAGAAGGAGG
AGGGGCAGGAGGCGGTGGGGGTGTCGGCCGGGGGGGGGGAGGCGGGAGGA
GAGGTGGTGATGTCCGCCGCGAGGAAAGAGAGGATGAGGAAGACGGCGAG
GGCGAGAAGGGCGAGGCGGTGGGGGTGTCGGCCGGGGGGGGGGAGGCGGG
AGGAGAGGTGGTGATGTCCGCCGCGAGGAAAGAGAGGATGAGGAAGACGG
CGAGGGCGAGAAGGGC
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