mRNA_M-pyrifera_M_contig109523.1995.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109523.1995.1
Unique NamemRNA_M-pyrifera_M_contig109523.1995.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A0A7V9A5B3_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V9A5B3_9BACT)

HSP 1 Score: 157 bits (396), Expect = 5.400e-48
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 MTKYSFGLLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            MTKYSFGLLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET
Sbjct:    1 MTKYSFGLLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 73          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: UPI001CCED36A (hypothetical protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCED36A)

HSP 1 Score: 119 bits (298), Expect = 4.780e-33
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 MTKYSFGLLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            +TK+S  LLL VF CT T+GCGPGGPPSG+V G+VTY DKPL TGT++L+PE+EG+ YAQGTIQPDGTY  ET
Sbjct:    3 VTKHSIALLLFVFACTVTIGCGPGGPPSGQVIGNVTYKDKPLPTGTIMLIPEKEGMPYAQGTIQPDGTYHVET 75          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: UPI001CCDFFD4 (hypothetical protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCDFFD4)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-15
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   25 LLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            L   F  T  VGCG  GP  G VTG+VTY  KPL TGT+  +PE++G+  A   +Q DGT+QAET
Sbjct:    9 LSLAFAVTTMVGCGSSGPEMGDVTGTVTYKGKPLPTGTITFIPEEDGIPRASAEVQEDGTFQAET 73          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A4A1R0_9BACT (Uncharacterized protein n=2 Tax=Blastopirellula marina TaxID=124 RepID=A4A1R0_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 5.370e-12
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    4 TKYSFGLLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            +K   GL++   V    +GCG  GP  G VTG+VT+  KPL TGT+  +PE+EGL  A   IQ DG Y+  T
Sbjct:    7 SKLILGLIVASLVTH--LGCGAHGPEMGDVTGTVTFQGKPLHTGTITFIPEEEGLPLAYAEIQADGAYEGFT 76          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A0A5C5VA30_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula retiformator TaxID=2527970 RepID=A0A5C5VA30_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 2.010e-11
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    7 KYSFGLLLCVFVCTF-TVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            KYS    + V   T  +VGCG  GP  G V GSVTY  KPL TGT+  +PE  G+  A   I+ DGTY+  T
Sbjct:    2 KYSTLATMVVAAATIASVGCGARGPEMGDVVGSVTYQGKPLPTGTITFMPETAGVPTAYANIKDDGTYEGYT 73          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A0A517SM90_9PLAN (Uncharacterized protein n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SM90_9PLAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.960e-9
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   22 LLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            LLL + +C    GCG    P   VTG+VT+ND+P+ TG+V+ VP+  G   AQGTI  DG Y   T
Sbjct:    4 LLLSLVLCGLLAGCGETTAPVYHVTGTVTFNDQPITTGSVVFVPKGGGP-TAQGTIGADGKYSLTT 68          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A4A1R2_9BACT (Uncharacterized protein n=2 Tax=Blastopirellula marina TaxID=124 RepID=A4A1R2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 8.530e-9
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   85 GKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            G V G+VTY  KPL TGTV  VPE+EGL  A   IQ DGTY+A T
Sbjct:    2 GHVFGTVTYEGKPLPTGTVSFVPEKEGLPMAYAQIQADGTYEAST 46          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A6C5X0_9PLAN (Uncharacterized protein n=3 Tax=Gimesia maris TaxID=122 RepID=A6C5X0_9PLAN)

HSP 1 Score: 54.7 bits (130), Expect = 3.030e-7
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   25 LLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            L C+ + T T GCG G P    V+G+++YN KPL  G+++ VP + G   AQG ++ DG Y  ET
Sbjct:   57 LFCLIIVTMT-GCGDGHPARSPVSGTISYNGKPLKIGSLLFVPVKGGPP-AQGKVRGDGFYVMET 119          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A0A517Q3M5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q3M5_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 7.130e-7
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 1
Query:   16 FGLLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTY 207
            FGLL+ V+      GCG G P    VTG+V+YN KPL  G+++ +P   G   AQG I  DG Y
Sbjct:   23 FGLLISVW------GCGDGHPARSPVTGTVSYNGKPLSIGSLVFIPVSGGPP-AQGKIDRDGNY 79          
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Match: A0A517RCJ1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RCJ1_9PLAN)

HSP 1 Score: 52.4 bits (124), Expect = 1.420e-6
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   22 LLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILVPEQEGLGYAQGTIQPDGTYQAET 219
            +LLC F+   T GCG G P    VTG+V+YN KPL  G+++ +P   G   AQG I  +G Y+  T
Sbjct:   21 ILLC-FILLSTWGCGDGHPKRSLVTGTVSYNGKPLSIGSLVFIPVGGGPP-AQGKINREGFYEMGT 84          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109523.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A7V9A5B3_9BACT5.400e-48100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
UPI001CCED36A4.780e-3371.23hypothetical protein n=1 Tax=Bremerella volcania T... [more]
UPI001CCDFFD41.180e-1552.31hypothetical protein n=1 Tax=Bremerella volcania T... [more]
A4A1R0_9BACT5.370e-1245.83Uncharacterized protein n=2 Tax=Blastopirellula ma... [more]
A0A5C5VA30_9BACT2.010e-1147.22Uncharacterized protein n=1 Tax=Blastopirellula re... [more]
A0A517SM90_9PLAN2.960e-946.97Uncharacterized protein n=1 Tax=Caulifigura conifo... [more]
A4A1R2_9BACT8.530e-962.22Uncharacterized protein n=2 Tax=Blastopirellula ma... [more]
A6C5X0_9PLAN3.030e-743.08Uncharacterized protein n=3 Tax=Gimesia maris TaxI... [more]
A0A517Q3M5_9PLAN7.130e-745.31Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517RCJ1_9PLAN1.420e-643.94Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109523contigM-pyrifera_M_contig109523:385..603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.6019828-CDS-M-pyrifera_M_contig109523:384..6031622815605.6019828-CDS-M-pyrifera_M_contig109523:384..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109523 385..603 +
1692277484.1447394-CDS-M-pyrifera_M_contig109523:384..6031692277484.1447394-CDS-M-pyrifera_M_contig109523:384..603Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109523 385..603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109523.1995.1prot_M-pyrifera_M_contig109523.1995.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109523 385..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109523.1995.1

>prot_M-pyrifera_M_contig109523.1995.1 ID=prot_M-pyrifera_M_contig109523.1995.1|Name=mRNA_M-pyrifera_M_contig109523.1995.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MTKYSFGLLLCVFVCTFTVGCGPGGPPSGKVTGSVTYNDKPLMTGTVILV
PEQEGLGYAQGTIQPDGTYQAET
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mRNA from alignment at M-pyrifera_M_contig109523:385..603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109523.1995.1 ID=mRNA_M-pyrifera_M_contig109523.1995.1|Name=mRNA_M-pyrifera_M_contig109523.1995.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig109523:385..603+ (Macrocystis pyrifera P11B4 male)
ATGACGAAATATTCCTTCGGTTTGCTACTTTGTGTTTTTGTCTGCACGTT TACCGTCGGCTGTGGTCCCGGCGGCCCGCCGTCGGGCAAGGTCACCGGCA GCGTCACCTATAACGACAAGCCCTTGATGACCGGCACCGTGATTCTGGTC CCAGAGCAAGAGGGCTTAGGTTACGCGCAGGGGACCATCCAACCTGACGG CACCTACCAGGCCGAAACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109523:385..603+

>mRNA_M-pyrifera_M_contig109523.1995.1 ID=mRNA_M-pyrifera_M_contig109523.1995.1|Name=mRNA_M-pyrifera_M_contig109523.1995.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig109523:385..603+ (Macrocystis pyrifera P11B4 male)
ATGACGAAATATTCCTTCGGTTTGCTACTTTGTGTTTTTGTCTGCACGTT
TACCGTCGGCTGTGGTCCCGGCGGCCCGCCGTCGGGCAAGGTCACCGGCA
GCGTCACCTATAACGACAAGCCCTTGATGACCGGCACCGTGATTCTGGTC
CCAGAGCAAGAGGGCTTAGGTTACGCGCAGGGGACCATCCAACCTGACGG
CACCTACCAGGCCGAAACCATGACGAAATATTCCTTCGGTTTGCTACTTT
GTGTTTTTGTCTGCACGTTTACCGTCGGCTGTGGTCCCGGCGGCCCGCCG
TCGGGCAAGGTCACCGGCAGCGTCACCTATAACGACAAGCCCTTGATGAC
CGGCACCGTGATTCTGGTCCCAGAGCAAGAGGGCTTAGGTTACGCGCAGG
GGACCATCCAACCTGACGGCACCTACCAGGCCGAAACC
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