mRNA_M-pyrifera_M_contig109492.1987.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109492.1987.1
Unique NamemRNA_M-pyrifera_M_contig109492.1987.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109492.1987.1 vs. uniprot
Match: A0A2D8CE14_9BACT (Uncharacterized protein n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CE14_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 3.470e-14
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 SDWDSDTSRLTAVIGYKLARNVEAKIVVSEQTPFDQSLYAFRFFITAFF 147
            S WD D SR++AV+GYKLARNV AK+ +S+Q+P DQSLYA RF+++AFF
Sbjct:  350 SSWDDDVSRVSAVVGYKLARNVTAKVSISDQSPLDQSLYAVRFYLSAFF 398
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BLAST of mRNA_M-pyrifera_M_contig109492.1987.1 vs. uniprot
Match: A0A3D1G9G6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G9G6_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 2.810e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    4 DWDSDTSRLTAVIGYKLARNVEAKIVVSEQTPFDQSLYAFRFFITAFF 147
            DWD D  R++  +GYKL+RNVE KI+ SEQTPFD SL+ FR  +TAFF
Sbjct:  108 DWDKDKYRVSGALGYKLSRNVEVKILASEQTPFDSSLFTFRALLTAFF 155
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BLAST of mRNA_M-pyrifera_M_contig109492.1987.1 vs. uniprot
Match: UPI00036DB520 (hypothetical protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI00036DB520)

HSP 1 Score: 62.0 bits (149), Expect = 6.150e-10
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 WDSDTSRLTAVIGYKLARNVEAKIVVSEQTPFDQSLYAFRFFITAFF 147
            WD +  R+TAVIGYKL RN+  K+  SEQTPFD S Y+FR  + AFF
Sbjct:  361 WDDNVERITAVIGYKLTRNLITKLSFSEQTPFDASAYSFRISLNAFF 407
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BLAST of mRNA_M-pyrifera_M_contig109492.1987.1 vs. uniprot
Match: A0A3M8G6V4_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G6V4_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.970e-6
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    7 WDSDTSRLTAVIGYKLARNVEAKIVVSEQTPFDQSLYAFRFFITAFF 147
            WD D +R TA++GYKL RNV  K+  +EQ  F+   Y+F+ ++TA F
Sbjct:  353 WDYDVTRFTALVGYKLDRNVLLKVAFAEQDNFNGDFYSFKAYVTAAF 399
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109492.1987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D8CE14_9BACT3.470e-1465.31Uncharacterized protein n=3 Tax=Balneolaceae TaxID... [more]
A0A3D1G9G6_9BACT2.810e-1362.50Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
UPI00036DB5206.150e-1059.57hypothetical protein n=1 Tax=Balneola vulgaris Tax... [more]
A0A3M8G6V4_9BACT3.970e-646.81Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109492contigM-pyrifera_M_contig109492:2..151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog1121104.AQXH01000001_gene1199
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs1IYIB@117747,28IVM@1,2Z8U0@2,4P4P5@976
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.29418-CDS-M-pyrifera_M_contig109492:1..1511622815605.29418-CDS-M-pyrifera_M_contig109492:1..151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109492 2..151 +
1692277484.017449-CDS-M-pyrifera_M_contig109492:1..1511692277484.017449-CDS-M-pyrifera_M_contig109492:1..151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109492 2..151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109492.1987.1prot_M-pyrifera_M_contig109492.1987.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109492 2..151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109492.1987.1

>prot_M-pyrifera_M_contig109492.1987.1 ID=prot_M-pyrifera_M_contig109492.1987.1|Name=mRNA_M-pyrifera_M_contig109492.1987.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
SDWDSDTSRLTAVIGYKLARNVEAKIVVSEQTPFDQSLYAFRFFITAFF*
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mRNA from alignment at M-pyrifera_M_contig109492:2..151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109492.1987.1 ID=mRNA_M-pyrifera_M_contig109492.1987.1|Name=mRNA_M-pyrifera_M_contig109492.1987.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig109492:2..151+ (Macrocystis pyrifera P11B4 male)
TCTGATTGGGATTCAGACACTTCCCGATTAACAGCGGTTATTGGTTACAA
ACTTGCTAGAAATGTAGAAGCAAAAATTGTAGTAAGTGAGCAGACTCCGT
TCGATCAATCACTTTATGCGTTTAGATTCTTTATAACTGCATTCTTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109492:2..151+

>mRNA_M-pyrifera_M_contig109492.1987.1 ID=mRNA_M-pyrifera_M_contig109492.1987.1|Name=mRNA_M-pyrifera_M_contig109492.1987.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig109492:2..151+ (Macrocystis pyrifera P11B4 male)
TCTGATTGGGATTCAGACACTTCCCGATTAACAGCGGTTATTGGTTACAA
ACTTGCTAGAAATGTAGAAGCAAAAATTGTAGTAAGTGAGCAGACTCCGT
TCGATCAATCACTTTATGCGTTTAGATTCTTTATAACTGCATTCTTTTAA
TCTGATTGGGATTCAGACACTTCCCGATTAACAGCGGTTATTGGTTACAA
ACTTGCTAGAAATGTAGAAGCAAAAATTGTAGTAAGTGAGCAGACTCCGT
TCGATCAATCACTTTATGCGTTTAGATTCTTTATAACTGCATTCTTTTAA
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