mRNA_M-pyrifera_M_contig109485.1984.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109485.1984.1
Unique NamemRNA_M-pyrifera_M_contig109485.1984.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Match: D3BL64_POLPP (WD40 repeat-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL64_POLPP)

HSP 1 Score: 53.1 bits (126), Expect = 6.910e-6
Identity = 26/74 (35.14%), Postives = 39/74 (52.70%), Query Frame = 1 
Query:   46 MVVKKDYLYATSGDKIIR-CSIITGKRATALVGHTGDIVRLRVTKNCLFSGAVDGTLRQWDLSSGKCINVFVGH 264
            +V+  D L   S D+ IR  S+         +GHT  +  +    N LFS + DGT+RQWD ++G+C N+   H
Sbjct:  494 LVINNDLLVTWSDDRTIRVASVKDTDYKRVFLGHTEPVSSVCYFMNRLFSASSDGTIRQWDFTTGRCTNIIHSH 567
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BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Match: A0A8C3JAI6_9CHAR (Uncharacterized protein n=2 Tax=Calidris pygmaea TaxID=425635 RepID=A0A8C3JAI6_9CHAR)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  133 LVGHTGDIVRLRVTKNCLFSGAV-DGTLRQWDLSSGKCINVFVGHLLSVR 279
            LVGHTG +   ++  N + SG   D TLR WD+ +G+C++V +GH+ +VR
Sbjct:   11 LVGHTGGVWSSQMRDNIIISGGSRDATLRVWDIETGQCLHVLMGHVAAVR 60
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BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Match: A0A2T9Y202_9FUNG (F-box domain-containing protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9Y202_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-5
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   61 DYLYATSGDKIIRCSIITGKRATALVGHTGDIVR---LRVTK------------NCLFSGAVDGTLRQWDLSSGKCINVFVGH 264
            DYL++ S D  IR  +++ K+ T +      I+R   L ++             + LFSG++DGT+R WD+ SGKC++V   H
Sbjct:  468 DYLFSCSDDSTIRRWVLSEKKCTHIYNGHSHIIRGISLNISSFLSTDSKPSNNNHKLFSGSLDGTIRVWDIDSGKCLSVLCYH 550
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109485.1984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D3BL64_POLPP6.910e-635.14WD40 repeat-containing protein n=1 Tax=Polysphondy... [more]
A0A8C3JAI6_9CHAR1.160e-544.00Uncharacterized protein n=2 Tax=Calidris pygmaea T... [more]
A0A2T9Y202_9FUNG1.750e-533.73F-box domain-containing protein n=1 Tax=Smittium s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109485contigM-pyrifera_M_contig109485:294..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.1609066-CDS-M-pyrifera_M_contig109485:293..6051622815605.1609066-CDS-M-pyrifera_M_contig109485:293..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109485 294..605 +
1692277483.9674344-CDS-M-pyrifera_M_contig109485:293..6051692277483.9674344-CDS-M-pyrifera_M_contig109485:293..605Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109485 294..605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109485.1984.1prot_M-pyrifera_M_contig109485.1984.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109485 294..605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109485.1984.1

>prot_M-pyrifera_M_contig109485.1984.1 ID=prot_M-pyrifera_M_contig109485.1984.1|Name=mRNA_M-pyrifera_M_contig109485.1984.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
SDRILKVRTKGNVQEMVVKKDYLYATSGDKIIRCSIITGKRATALVGHTG
DIVRLRVTKNCLFSGAVDGTLRQWDLSSGKCINVFVGHLLSVRDFHVYPT
PTVR
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mRNA from alignment at M-pyrifera_M_contig109485:294..605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109485.1984.1 ID=mRNA_M-pyrifera_M_contig109485.1984.1|Name=mRNA_M-pyrifera_M_contig109485.1984.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig109485:294..605+ (Macrocystis pyrifera P11B4 male)
AGCGACCGCATCCTCAAGGTCAGGACCAAGGGCAACGTTCAAGAGATGGT
GGTGAAGAAGGACTACCTCTACGCCACCTCTGGCGACAAGATCATCCGCT
GCAGCATCATCACTGGAAAGAGAGCCACTGCGCTGGTGGGCCATACTGGC
GACATCGTGCGGCTGCGTGTCACAAAGAACTGCCTCTTCAGCGGCGCTGT
TGATGGCACCCTCCGCCAGTGGGACCTCAGCAGTGGCAAGTGCATCAACG
TCTTCGTGGGCCACCTCCTGTCGGTGCGAGACTTCCACGTCTACCCCACC
CCCACTGTGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109485:294..605+

>mRNA_M-pyrifera_M_contig109485.1984.1 ID=mRNA_M-pyrifera_M_contig109485.1984.1|Name=mRNA_M-pyrifera_M_contig109485.1984.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig109485:294..605+ (Macrocystis pyrifera P11B4 male)
AGCGACCGCATCCTCAAGGTCAGGACCAAGGGCAACGTTCAAGAGATGGT
GGTGAAGAAGGACTACCTCTACGCCACCTCTGGCGACAAGATCATCCGCT
GCAGCATCATCACTGGAAAGAGAGCCACTGCGCTGGTGGGCCATACTGGC
GACATCGTGCGGCTGCGTGTCACAAAGAACTGCCTCTTCAGCGGCGCTGT
TGATGGCACCCTCCGCCAGTGGGACCTCAGCAGTGGCAAGTGCATCAACG
TCTTCGTGGGCCACCTCCTGTCGGTGCGAGACTTCCACGTCTACCCCACC
CCCACTGTGAGGAGCGACCGCATCCTCAAGGTCAGGACCAAGGGCAACGT
TCAAGAGATGGTGGTGAAGAAGGACTACCTCTACGCCACCTCTGGCGACA
AGATCATCCGCTGCAGCATCATCACTGGAAAGAGAGCCACTGCGCTGGTG
GGCCATACTGGCGACATCGTGCGGCTGCGTGTCACAAAGAACTGCCTCTT
CAGCGGCGCTGTTGATGGCACCCTCCGCCAGTGGGACCTCAGCAGTGGCA
AGTGCATCAACGTCTTCGTGGGCCACCTCCTGTCGGTGCGAGACTTCCAC
GTCTACCCCACCCCCACTGTGAGG
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