mRNA_M-pyrifera_M_contig109423.1979.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109423.1979.1
Unique NamemRNA_M-pyrifera_M_contig109423.1979.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109423.1979.1 vs. uniprot
Match: A0A812UY97_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UY97_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 8.120e-12
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 AVPPQKAWVGLETTTPNDNQPYPEKTLQHRFQRIQQANLCHVGLWKAPIPTVFLPFLK 174
            A+P  K  VGLETT  +   PYP   LQ RFQ +++A L  VGLW APIP  FLPFL+
Sbjct:  110 ALPHGKIVVGLETTMASSGAPYPVSVLQQRFQLLREAGLDAVGLWLAPIPASFLPFLR 167
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BLAST of mRNA_M-pyrifera_M_contig109423.1979.1 vs. uniprot
Match: UPI000644E666 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E666)

HSP 1 Score: 53.5 bits (127), Expect = 7.390e-7
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 AVPPQKAWVGLETTTPNDNQPYPEKTLQHRFQRIQQANLCHVGLWKAPIPTVFLPFLK 174
            ++P  K  +GL T   N N+P+ +  LQ RF  I  A + ++G+W APIP+ + PFLK
Sbjct:  210 SIPLNKLAIGLMTVGDN-NEPFSDAELQARFDMINSAKISNIGIWDAPIPSAWFPFLK 266
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BLAST of mRNA_M-pyrifera_M_contig109423.1979.1 vs. uniprot
Match: A0A8J4PWM9_9MYCE (Protein kinase domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PWM9_9MYCE)

HSP 1 Score: 52.4 bits (124), Expect = 2.210e-6
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    4 VPPQKAWVGLETTTPNDNQPYPEKTLQHRFQRIQQANLCHVGLWKAPIPTVFLPFLK 174
            +P  K  VG+ T   N N P+ +  LQ RFQ +    + ++G+W APIPT +LPFLK
Sbjct:  680 IPLDKLAVGMMTVGSN-NTPFTDDQLQQRFQLLSDNKVQYIGIWSAPIPTNWLPFLK 735
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BLAST of mRNA_M-pyrifera_M_contig109423.1979.1 vs. uniprot
Match: F0ZBD0_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZBD0_DICPU)

HSP 1 Score: 51.2 bits (121), Expect = 5.150e-6
Identity = 22/58 (37.93%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 AVPPQKAWVGLETTTPNDNQPYPEKTLQHRFQRIQQANLCHVGLWKAPIPTVFLPFLK 174
            ++P  K  VG+ T   N+N P+ +  LQ RF+ ++  N+ ++G+W APIP+ ++P+LK
Sbjct:  216 SIPLSKLAVGVMTVDANNN-PFTDPELQQRFELLKTYNIQYLGIWDAPIPSSWIPYLK 272
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BLAST of mRNA_M-pyrifera_M_contig109423.1979.1 vs. uniprot
Match: F4QBX9_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QBX9_CAVFA)

HSP 1 Score: 48.9 bits (115), Expect = 3.520e-5
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    1 AVPPQKAWVGLETTTPNDNQPYPEKTLQHRFQRIQQANLCHVGLWKAPIPTVFLPFL 171
            ++P  K  +GL T   N+N P  ++ L  RF  I  AN+ ++G+W APIP+ + PFL
Sbjct:  218 SIPLDKLAIGLMTVDGNNN-PLSDQDLTQRFDLINAANIRYIGIWDAPIPSNWFPFL 273
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109423.1979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A812UY97_9DINO8.120e-1255.17Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
UPI000644E6667.390e-741.38hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A8J4PWM9_9MYCE2.210e-643.86Protein kinase domain-containing protein n=1 Tax=P... [more]
F0ZBD0_DICPU5.150e-637.93Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
F4QBX9_CAVFA3.520e-540.35Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109423contigM-pyrifera_M_contig109423:3..176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.980654-CDS-M-pyrifera_M_contig109423:2..1761622815604.980654-CDS-M-pyrifera_M_contig109423:2..176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109423 3..176 +
1692277483.8865943-CDS-M-pyrifera_M_contig109423:2..1761692277483.8865943-CDS-M-pyrifera_M_contig109423:2..176Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109423 3..176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109423.1979.1prot_M-pyrifera_M_contig109423.1979.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109423 3..176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109423.1979.1

>prot_M-pyrifera_M_contig109423.1979.1 ID=prot_M-pyrifera_M_contig109423.1979.1|Name=mRNA_M-pyrifera_M_contig109423.1979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
AVPPQKAWVGLETTTPNDNQPYPEKTLQHRFQRIQQANLCHVGLWKAPIP
TVFLPFLK
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mRNA from alignment at M-pyrifera_M_contig109423:3..176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109423.1979.1 ID=mRNA_M-pyrifera_M_contig109423.1979.1|Name=mRNA_M-pyrifera_M_contig109423.1979.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig109423:3..176+ (Macrocystis pyrifera P11B4 male)
GCAGTACCCCCCCAAAAGGCATGGGTCGGACTCGAAACAACAACCCCCAA
CGACAACCAGCCATACCCCGAAAAAACCCTCCAGCACAGGTTCCAACGCA
TCCAGCAAGCCAACCTCTGCCACGTCGGGCTCTGGAAGGCCCCCATCCCA
ACAGTCTTCCTGCCATTCCTAAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109423:3..176+

>mRNA_M-pyrifera_M_contig109423.1979.1 ID=mRNA_M-pyrifera_M_contig109423.1979.1|Name=mRNA_M-pyrifera_M_contig109423.1979.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig109423:3..176+ (Macrocystis pyrifera P11B4 male)
GCAGTACCCCCCCAAAAGGCATGGGTCGGACTCGAAACAACAACCCCCAA
CGACAACCAGCCATACCCCGAAAAAACCCTCCAGCACAGGTTCCAACGCA
TCCAGCAAGCCAACCTCTGCCACGTCGGGCTCTGGAAGGCCCCCATCCCA
ACAGTCTTCCTGCCATTCCTAAAAGCAGTACCCCCCCAAAAGGCATGGGT
CGGACTCGAAACAACAACCCCCAACGACAACCAGCCATACCCCGAAAAAA
CCCTCCAGCACAGGTTCCAACGCATCCAGCAAGCCAACCTCTGCCACGTC
GGGCTCTGGAAGGCCCCCATCCCAACAGTCTTCCTGCCATTCCTAAAA
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